Wall clock time and date at job start Wed Apr 1 2020 06:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45200 * 109.47074 * 2 1 4 4 C 1.34880 * 116.99864 * 179.97438 * 3 2 1 5 5 O 1.21613 * 119.99989 * 0.02562 * 4 3 2 6 6 C 1.46494 * 120.00010 * 179.97438 * 4 3 2 7 7 S 1.76212 * 126.17777 * 0.30523 * 6 4 3 8 8 C 1.70929 * 90.37186 * 180.02562 * 7 6 4 9 9 S 1.76199 * 124.71002 * 179.97438 * 8 7 6 10 10 O 1.42096 * 106.40321 * 156.15942 * 9 8 7 11 11 O 1.42108 * 106.39883 * 23.23950 * 9 8 7 12 12 N 1.65597 * 107.22117 * 269.70100 * 9 8 7 13 13 C 1.46499 * 119.99926 * 64.72196 * 12 9 8 14 14 C 1.53004 * 109.47094 * 165.27799 * 13 12 9 15 15 C 1.50701 * 109.47038 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00406 * 0.02562 * 15 14 13 17 17 C 1.37879 * 120.00112 * 179.97438 * 15 14 13 18 18 N 1.31520 * 119.99790 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00215 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47263 * 60.00503 * 19 17 15 21 21 H 1.48501 * 109.47068 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47296 * 300.00346 * 19 17 15 23 23 N 1.29396 * 110.58096 * 359.66462 * 8 7 6 24 24 C 1.30914 * 117.47194 * 0.26211 * 23 8 7 25 25 C 1.50693 * 123.03494 * 179.97438 * 24 23 8 26 26 H 1.09001 * 109.47140 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47080 * 299.99623 * 1 2 3 28 28 H 1.09001 * 109.47192 * 59.99910 * 1 2 3 29 29 H 1.08995 * 109.47036 * 239.99764 * 2 1 3 30 30 H 1.09004 * 109.46695 * 120.00212 * 2 1 3 31 31 H 0.97001 * 120.00224 * 245.00409 * 12 9 8 32 32 H 1.09007 * 109.47241 * 285.27714 * 13 12 9 33 33 H 1.08995 * 109.47308 * 45.27753 * 13 12 9 34 34 H 1.08994 * 109.46776 * 299.99858 * 14 13 12 35 35 H 1.09002 * 109.46826 * 60.00127 * 14 13 12 36 36 H 0.96996 * 120.00150 * 179.97438 * 18 17 15 37 37 H 1.08994 * 109.47585 * 90.02519 * 25 24 23 38 38 H 1.09003 * 109.46883 * 210.02803 * 25 24 23 39 39 H 1.09002 * 109.46944 * 330.02141 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3512 1.5457 0.0005 5 8 4.0920 0.5812 0.0005 6 6 3.9111 2.8994 0.0000 7 16 2.9944 4.4042 0.0062 8 6 4.4483 5.3030 0.0003 9 16 4.5401 7.0626 0.0014 10 8 5.8087 7.3978 0.5468 11 8 3.3126 7.5281 0.5453 12 7 4.5667 7.5530 -1.5801 13 6 3.4059 7.3131 -2.4410 14 6 3.5259 8.1630 -3.7076 15 6 2.3321 7.9157 -4.5935 16 1 1.5643 7.2221 -4.2839 17 6 2.2195 8.5757 -5.7988 18 7 3.1543 9.4207 -6.1756 19 14 0.7394 8.2697 -6.8965 20 1 -0.5013 8.6382 -6.1686 21 1 0.8561 9.0945 -8.1259 22 1 0.6872 6.8329 -7.2680 23 7 5.4721 4.5117 0.0015 24 6 5.2398 3.2234 0.0015 25 6 6.3372 2.1907 0.0022 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 5.3524 7.9955 -1.9375 32 1 3.3673 6.2584 -2.7134 33 1 2.4952 7.5838 -1.9068 34 1 3.5644 9.2176 -3.4351 35 1 4.4367 7.8922 -4.2418 36 1 3.0753 9.8848 -7.0237 37 1 6.6009 1.9414 1.0300 38 1 5.9923 1.2937 -0.5122 39 1 7.2122 2.5900 -0.5108 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184975019.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:52:04 Heat of formation + Delta-G solvation = -147.356235 kcal Electronic energy + Delta-G solvation = -25681.205853 eV Core-core repulsion = 21648.948104 eV Total energy + Delta-G solvation = -4032.257749 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.97982 -40.92606 -38.58755 -37.89741 -37.26124 -37.13406 -34.75377 -33.51617 -32.67621 -31.06233 -29.95192 -27.16916 -26.45203 -24.96972 -23.24644 -23.03691 -21.44246 -20.90650 -20.12590 -19.05432 -18.57700 -18.36987 -18.22785 -17.88545 -17.29948 -16.99575 -16.44981 -16.36843 -15.67003 -15.58642 -15.22110 -15.09116 -14.77774 -14.42953 -14.03924 -13.76229 -13.59277 -13.53079 -13.51645 -13.43923 -13.27957 -13.23841 -13.06053 -12.98327 -12.73196 -12.57548 -12.46169 -12.35179 -11.94633 -11.64661 -11.52910 -11.33175 -11.28833 -11.15890 -10.65153 -10.43596 -10.41735 -8.18316 -6.28885 -1.76540 -1.03771 -0.39495 -0.02657 0.63868 1.24307 1.39192 1.46325 1.48251 1.55652 1.69492 2.31319 2.45262 2.77663 3.17289 3.32741 3.38604 3.58386 3.98392 3.99400 4.08091 4.29122 4.31003 4.47273 4.59244 4.62727 4.73200 4.74697 4.90337 4.91217 4.96507 5.14815 5.30945 5.51222 5.63630 5.81024 5.91512 5.95407 6.21469 6.28983 6.86819 7.40570 8.93474 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.008948 B = 0.003498 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3128.499166 B = 8002.158166 C =10041.230120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.357 6.357 4 C 0.552 3.448 5 O -0.493 6.493 6 C -0.278 4.278 7 S 0.399 5.601 8 C -0.558 4.558 9 S 2.731 3.269 10 O -0.952 6.952 11 O -0.948 6.948 12 N -1.096 6.096 13 C 0.121 3.879 14 C 0.021 3.979 15 C -0.543 4.543 16 H 0.072 0.928 17 C 0.004 3.996 18 N -0.931 5.931 19 Si 0.962 3.038 20 H -0.265 1.265 21 H -0.288 1.288 22 H -0.266 1.266 23 N -0.381 5.381 24 C 0.129 3.871 25 C -0.090 4.090 26 H 0.105 0.895 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.429 0.571 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.007 0.993 35 H 0.008 0.992 36 H 0.264 0.736 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.403 -18.997 14.046 23.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.017 4.017 3 O -0.274 6.274 4 C 0.394 3.606 5 O -0.383 6.383 6 C -0.402 4.402 7 S 0.657 5.343 8 C -0.906 4.906 9 S 2.811 3.189 10 O -0.942 6.942 11 O -0.937 6.937 12 N -0.861 5.861 13 C -0.004 4.004 14 C -0.018 4.018 15 C -0.582 4.582 16 H 0.090 0.910 17 C -0.195 4.195 18 N -0.570 5.570 19 Si 0.787 3.213 20 H -0.190 1.190 21 H -0.214 1.214 22 H -0.191 1.191 23 N -0.099 5.099 24 C -0.016 4.016 25 C -0.149 4.149 26 H 0.124 0.876 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.100 0.900 31 H 0.266 0.734 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.025 0.975 35 H 0.027 0.973 36 H 0.072 0.928 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.950 -18.177 14.745 23.590 hybrid contribution 0.636 -0.906 -1.263 1.679 sum -2.315 -19.083 13.482 23.479 Atomic orbital electron populations 1.21882 0.90369 1.04726 1.03816 1.23496 0.97028 0.77546 1.03636 1.86602 1.21547 1.35506 1.83696 1.19047 0.81676 0.86610 0.73224 1.90859 1.60453 1.41066 1.45885 1.25588 0.98242 0.97819 1.18558 1.83920 1.03785 0.91502 1.55076 1.40212 1.00487 1.31309 1.18635 1.01326 0.73362 0.71452 0.72764 1.93573 1.42344 1.81449 1.76852 1.93643 1.46380 1.76656 1.77069 1.55328 1.27000 1.73351 1.30419 1.21558 0.86114 1.00411 0.92328 1.19146 0.96723 0.94764 0.91194 1.21546 1.07324 1.25548 1.03806 0.91001 1.25902 0.99263 0.94734 0.99566 1.70077 1.35618 1.28563 1.22792 0.85537 0.79546 0.78470 0.77738 1.19020 1.21389 1.19077 1.66208 1.31430 1.02682 1.09609 1.21831 0.93387 0.91192 0.95228 1.20810 0.94213 0.94638 1.05191 0.87615 0.91141 0.91484 0.90350 0.89990 0.73393 0.91319 0.89994 0.97470 0.97342 0.92771 0.88103 0.88185 0.88898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 10.29 71.98 0.74 -0.57 16 2 C 0.06 0.73 6.20 71.98 0.45 1.18 16 3 O -0.36 -6.87 10.12 -57.94 -0.59 -7.46 16 4 C 0.55 12.36 7.92 69.97 0.55 12.91 16 5 O -0.49 -11.78 14.12 19.47 0.27 -11.51 16 6 C -0.28 -6.68 6.52 24.08 0.16 -6.52 16 7 S 0.40 9.51 22.86 -56.49 -1.29 8.21 16 8 C -0.56 -15.85 7.38 130.60 0.96 -14.89 16 9 S 2.73 83.83 5.91 -56.49 -0.33 83.49 16 10 O -0.95 -33.06 18.00 -128.00 -2.30 -35.36 16 11 O -0.95 -31.22 17.31 -128.00 -2.22 -33.44 16 12 N -1.10 -34.76 6.00 -187.48 -1.12 -35.88 16 13 C 0.12 4.39 6.16 86.38 0.53 4.92 16 14 C 0.02 0.98 5.12 29.85 0.15 1.13 16 15 C -0.54 -28.29 9.11 25.60 0.23 -28.06 16 16 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 17 C 0.00 0.21 5.46 84.65 0.46 0.67 16 18 N -0.93 -53.82 13.29 21.45 0.28 -53.54 16 19 Si 0.96 41.71 29.54 68.60 2.03 43.73 16 20 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 21 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 22 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 23 N -0.38 -11.05 10.47 -187.11 -1.96 -13.01 16 24 C 0.13 3.27 6.83 42.35 0.29 3.56 16 25 C -0.09 -1.77 9.72 71.23 0.69 -1.08 16 26 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 28 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.43 12.72 8.65 -96.74 -0.84 11.88 16 32 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 33 H 0.08 2.85 7.76 -2.39 -0.02 2.83 16 34 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 35 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 36 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 37 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.10 1.96 6.06 -2.39 -0.01 1.95 16 39 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -68.45 369.57 -1.74 -70.20 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: 0.26 Total: 11.30 kcal Atomic # 6 Polarization: -31.97 SS G_CDS: 5.22 Total: -26.75 kcal Atomic # 7 Polarization: -99.63 SS G_CDS: -2.80 Total: -102.43 kcal Atomic # 8 Polarization: -82.93 SS G_CDS: -4.83 Total: -87.76 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.73 kcal Atomic # 16 Polarization: 93.33 SS G_CDS: -1.62 Total: 91.71 kcal Total: -68.45 -1.74 -70.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184975019.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.159 kcal (2) G-P(sol) polarization free energy of solvation -68.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds