Wall clock time and date at job start Wed Apr 1 2020 04:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46618 * 183.96081 * 3 2 1 5 5 C 1.36931 * 120.00627 * 295.98975 * 4 3 2 6 6 H 1.08006 * 119.99416 * 314.23259 * 5 4 3 7 7 C 1.38809 * 120.00835 * 134.23454 * 5 4 3 8 8 N 1.31622 * 119.99752 * 347.60591 * 7 5 4 9 9 Si 1.86798 * 120.00343 * 167.60022 * 7 5 4 10 10 H 1.48496 * 109.47283 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46601 * 120.00192 * 9 7 5 12 12 H 1.48497 * 109.47387 * 240.00354 * 9 7 5 13 13 S 1.65601 * 119.99795 * 115.98551 * 4 3 2 14 14 O 1.42099 * 106.40252 * 163.45268 * 13 4 3 15 15 O 1.42100 * 106.40399 * 30.53087 * 13 4 3 16 16 C 1.76199 * 107.22039 * 276.99333 * 13 4 3 17 17 C 1.34839 * 122.63405 * 17.92636 * 16 13 4 18 18 S 1.71992 * 105.75641 * 180.24183 * 17 16 13 19 19 N 1.69561 * 95.88015 * 359.73735 * 18 17 16 20 20 C 1.30858 * 107.16310 * 0.02562 * 19 18 17 21 21 C 1.48378 * 121.76432 * 180.02562 * 20 19 18 22 22 C 1.39340 * 120.12370 * 298.93873 * 21 20 19 23 23 C 1.38014 * 119.87959 * 179.97438 * 22 21 20 24 24 C 1.38324 * 120.11913 * 359.97438 * 23 22 21 25 25 C 1.38316 * 120.24836 * 0.02562 * 24 23 22 26 26 C 1.38015 * 120.12075 * 0.02562 * 25 24 23 27 27 H 4.40639 * 5.51284 * 180.02562 * 4 1 2 28 28 H 1.08996 * 109.47047 * 63.96912 * 3 2 1 29 29 H 1.09000 * 109.47668 * 303.96207 * 3 2 1 30 30 H 0.97001 * 120.00180 * 179.97438 * 8 7 5 31 31 H 1.08003 * 127.12034 * 359.97438 * 17 16 13 32 32 H 1.07999 * 120.06089 * 359.96282 * 22 21 20 33 33 H 1.07996 * 119.94422 * 179.97438 * 23 22 21 34 34 H 1.07997 * 119.87477 * 179.74108 * 24 23 22 35 35 H 1.08003 * 119.94550 * 179.97438 * 25 24 23 36 36 H 1.08004 * 120.06495 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1337 1.3788 0.0954 5 6 2.8715 2.2692 -0.9114 6 1 3.0134 1.9767 -1.9413 7 6 2.4236 3.5476 -0.6084 8 7 2.0185 3.8311 0.6115 9 14 2.3960 4.8658 -1.9316 10 1 2.8978 4.2965 -3.2080 11 1 1.0046 5.3497 -2.1191 12 1 3.2630 5.9989 -1.5199 13 16 4.0018 1.8600 1.4210 14 8 4.6480 3.0727 1.0589 15 8 4.7033 0.7125 1.8795 16 6 2.8426 2.2714 2.6825 17 6 1.5586 1.8607 2.6523 18 16 0.8283 2.5060 4.0694 19 7 2.2231 3.2772 4.6479 20 6 3.1803 3.0403 3.7876 21 6 4.5530 3.5695 3.9810 22 6 4.7706 4.9445 4.0387 23 6 6.0494 5.4313 4.2193 24 6 7.1139 4.5567 4.3435 25 6 6.9037 3.1908 4.2870 26 6 5.6292 2.6931 4.1057 27 1 -1.0502 -0.0005 0.0002 28 1 3.0096 -0.4502 -0.9234 29 1 3.0097 -0.5733 0.8523 30 1 1.7058 4.7245 0.8234 31 1 1.0856 1.2557 1.8929 32 1 3.9402 5.6282 3.9421 33 1 6.2194 6.4968 4.2638 34 1 8.1135 4.9419 4.4805 35 1 7.7384 2.5124 4.3841 36 1 5.4660 1.6263 4.0621 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001309432157.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:04 Heat of formation + Delta-G solvation = 47.433324 kcal Electronic energy + Delta-G solvation = -26831.070467 eV Core-core repulsion = 23114.568347 eV Total energy + Delta-G solvation = -3716.502120 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 348.039 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -40.77957 -38.93690 -37.87077 -37.79250 -36.42221 -34.32033 -32.87615 -32.65656 -32.01938 -31.66202 -28.23260 -26.40545 -25.55645 -23.70250 -23.30061 -21.52022 -20.64280 -19.65532 -19.11441 -18.78654 -18.20288 -17.48742 -17.19548 -16.79856 -16.29960 -16.12024 -16.01601 -15.49939 -15.16783 -15.12266 -14.78222 -14.48430 -14.38981 -14.07873 -13.76699 -13.54718 -13.17904 -12.98537 -12.91908 -12.78168 -12.58341 -12.49923 -12.36784 -12.12117 -12.08142 -11.98219 -11.36888 -11.21203 -11.03200 -10.86360 -10.78731 -10.13697 -9.95744 -9.81158 -9.52831 -8.31697 -6.10671 -0.43958 -0.20278 0.14399 0.39590 0.60848 0.78096 1.12796 1.44033 1.50132 1.57932 1.92265 2.05435 2.38036 2.71690 2.78770 2.96709 3.17670 3.39615 3.71011 3.89483 3.93180 4.01742 4.17888 4.21093 4.36183 4.40103 4.47853 4.55096 4.67605 4.78266 4.92032 5.02716 5.16710 5.25440 5.44083 5.47311 5.48271 5.51185 5.53661 5.98569 6.33685 6.86120 7.01664 7.39913 8.70502 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.010795 B = 0.006341 C = 0.005556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2593.201392 B = 4414.910563 C = 5038.713967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.207 4.207 3 C 0.209 3.791 4 N -0.860 5.860 5 C -0.301 4.301 6 H 0.092 0.908 7 C 0.012 3.988 8 N -0.883 5.883 9 Si 0.971 3.029 10 H -0.256 1.256 11 H -0.275 1.275 12 H -0.293 1.293 13 S 2.697 3.303 14 O -0.973 6.973 15 O -1.019 7.019 16 C -0.683 4.683 17 C -0.064 4.064 18 S 0.300 5.700 19 N -0.490 5.490 20 C 0.218 3.782 21 C -0.063 4.063 22 C -0.094 4.094 23 C -0.118 4.118 24 C -0.103 4.103 25 C -0.117 4.117 26 C -0.139 4.139 27 H 0.247 0.753 28 H 0.103 0.897 29 H 0.097 0.903 30 H 0.270 0.730 31 H 0.196 0.804 32 H 0.115 0.885 33 H 0.159 0.841 34 H 0.169 0.831 35 H 0.160 0.840 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.771 -2.319 4.680 5.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.209 4.209 3 C 0.084 3.916 4 N -0.691 5.691 5 C -0.436 4.436 6 H 0.110 0.890 7 C -0.193 4.193 8 N -0.523 5.523 9 Si 0.797 3.203 10 H -0.180 1.180 11 H -0.201 1.201 12 H -0.219 1.219 13 S 2.791 3.209 14 O -0.962 6.962 15 O -1.009 7.009 16 C -0.784 4.784 17 C -0.213 4.213 18 S 0.454 5.546 19 N -0.311 5.311 20 C 0.041 3.959 21 C -0.068 4.068 22 C -0.113 4.113 23 C -0.136 4.136 24 C -0.121 4.121 25 C -0.135 4.135 26 C -0.159 4.159 27 H 0.263 0.737 28 H 0.121 0.879 29 H 0.115 0.885 30 H 0.079 0.921 31 H 0.213 0.787 32 H 0.133 0.867 33 H 0.176 0.824 34 H 0.187 0.813 35 H 0.177 0.823 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.191 -1.610 6.577 6.773 hybrid contribution -0.134 0.493 -1.705 1.779 sum 0.057 -1.117 4.872 4.999 Atomic orbital electron populations 1.25549 0.96487 0.99100 1.00499 1.23826 0.95375 1.00988 1.00717 1.18581 0.84604 0.84344 1.04082 1.52743 1.66767 1.15654 1.33913 1.19109 1.42921 0.93094 0.88456 0.89050 1.26142 0.93229 1.01014 0.98946 1.69875 1.40163 1.22163 1.20071 0.85175 0.77470 0.78462 0.79209 1.18007 1.20082 1.21932 1.02585 0.73079 0.72301 0.72943 1.93384 1.73472 1.47410 1.81958 1.93412 1.71641 1.52559 1.83323 1.30695 1.14621 1.15114 1.17951 1.26483 0.95529 0.97818 1.01461 1.83111 1.17455 1.42469 1.11589 1.76618 1.01331 1.25493 1.27665 1.19437 0.94337 0.93037 0.89137 1.18418 0.88829 0.95120 1.04455 1.21213 0.98902 0.93087 0.98104 1.21487 0.91335 1.01798 0.98978 1.21732 1.00570 0.92592 0.97210 1.21467 0.95903 0.97171 0.98944 1.21554 0.93710 0.99537 1.01067 0.73715 0.87884 0.88478 0.92064 0.78694 0.86683 0.82358 0.81305 0.82290 0.86136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.97 18.63 74.32 1.38 -4.58 16 2 C -0.21 -7.38 11.00 31.12 0.34 -7.03 16 3 C 0.21 7.99 6.16 84.57 0.52 8.51 16 4 N -0.86 -40.01 2.48 -352.52 -0.87 -40.88 16 5 C -0.30 -14.82 8.63 84.03 0.72 -14.09 16 6 H 0.09 4.32 7.86 -2.91 -0.02 4.30 16 7 C 0.01 0.59 4.44 84.86 0.38 0.96 16 8 N -0.88 -45.11 9.15 21.65 0.20 -44.91 16 9 Si 0.97 41.80 29.57 68.60 2.03 43.83 16 10 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 11 H -0.28 -11.34 7.11 99.48 0.71 -10.63 16 12 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 13 S 2.70 133.25 3.64 -56.49 -0.21 133.04 16 14 O -0.97 -53.81 14.91 -128.00 -1.91 -55.72 16 15 O -1.02 -50.03 15.68 -128.00 -2.01 -52.04 16 16 C -0.68 -31.45 4.12 21.62 0.09 -31.37 16 17 C -0.06 -2.64 9.73 67.04 0.65 -1.99 16 18 S 0.30 10.87 23.70 -56.49 -1.34 9.53 16 19 N -0.49 -20.73 12.08 -52.50 -0.63 -21.36 16 20 C 0.22 9.83 6.12 42.13 0.26 10.08 16 21 C -0.06 -2.72 4.40 -20.04 -0.09 -2.81 16 22 C -0.09 -3.61 9.78 22.48 0.22 -3.39 16 23 C -0.12 -3.54 10.03 22.24 0.22 -3.32 16 24 C -0.10 -2.75 10.04 22.31 0.22 -2.53 16 25 C -0.12 -3.61 10.03 22.24 0.22 -3.39 16 26 C -0.14 -5.46 8.67 22.48 0.19 -5.27 16 27 H 0.25 5.14 7.80 -4.41 -0.03 5.10 16 28 H 0.10 3.47 8.14 -2.39 -0.02 3.45 16 29 H 0.10 3.47 7.05 -2.39 -0.02 3.46 16 30 H 0.27 13.72 8.31 -92.71 -0.77 12.95 16 31 H 0.20 7.67 4.64 -2.91 -0.01 7.66 16 32 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 33 H 0.16 3.53 8.06 -2.91 -0.02 3.50 16 34 H 0.17 2.92 8.06 -2.91 -0.02 2.90 16 35 H 0.16 3.72 8.06 -2.91 -0.02 3.69 16 36 H 0.12 4.87 7.14 -2.91 -0.02 4.85 16 Total: -1.00 -67.07 337.50 1.73 -65.34 By element: Atomic # 1 Polarization: 22.24 SS G_CDS: 1.13 Total: 23.36 kcal Atomic # 6 Polarization: -65.55 SS G_CDS: 5.35 Total: -60.21 kcal Atomic # 7 Polarization: -105.84 SS G_CDS: -1.31 Total: -107.15 kcal Atomic # 8 Polarization: -103.84 SS G_CDS: -3.92 Total: -107.76 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Atomic # 16 Polarization: 144.12 SS G_CDS: -1.54 Total: 142.58 kcal Total: -67.07 1.73 -65.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001309432157.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.775 kcal (2) G-P(sol) polarization free energy of solvation -67.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds