Wall clock time and date at job start Wed Apr 1 2020 04:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86793 * 120.00246 * 2 1 4 4 H 1.48500 * 109.47414 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47527 * 299.99813 * 3 2 1 6 6 H 1.48500 * 109.47212 * 59.99684 * 3 2 1 7 7 C 1.39943 * 119.99514 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99920 * 197.85641 * 7 2 1 9 9 C 1.41398 * 120.00154 * 17.86083 * 7 2 1 10 10 C 1.40721 * 120.24322 * 204.37698 * 9 7 2 11 11 C 1.37611 * 119.74202 * 180.02562 * 10 9 7 12 12 C 1.38638 * 120.25040 * 0.02562 * 11 10 9 13 13 S 1.76201 * 119.74820 * 179.97438 * 12 11 10 14 14 O 1.42104 * 106.40395 * 336.45885 * 13 12 11 15 15 O 1.42098 * 106.40080 * 203.54295 * 13 12 11 16 16 O 1.52194 * 107.22289 * 90.00154 * 13 12 11 17 17 C 1.35977 * 114.00114 * 74.99370 * 16 13 12 18 18 C 1.38700 * 119.99009 * 270.02844 * 17 16 13 19 19 C 1.38216 * 120.08359 * 179.75245 * 18 17 16 20 20 C 1.38535 * 120.09688 * 0.45093 * 19 18 17 21 21 C 1.39252 * 119.92114 * 359.54125 * 20 19 18 22 22 C 1.38538 * 119.87854 * 0.23863 * 21 20 19 23 23 O 1.36510 * 108.65065 * 180.25125 * 21 20 19 24 24 C 1.43982 * 105.49651 * 342.70591 * 23 21 20 25 25 O 1.36607 * 131.45915 * 179.85922 * 20 19 18 26 26 C 1.38627 * 120.50162 * 0.25619 * 12 11 10 27 27 C 1.37618 * 120.24906 * 359.44997 * 26 12 11 28 28 H 0.97008 * 119.99442 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.12688 * 359.97438 * 10 9 7 30 30 H 1.08008 * 119.87557 * 180.02562 * 11 10 9 31 31 H 1.07997 * 119.95802 * 359.97438 * 18 17 16 32 32 H 1.07997 * 119.95231 * 180.33631 * 19 18 17 33 33 H 1.08002 * 120.00234 * 180.02562 * 22 21 20 34 34 H 1.08994 * 110.57143 * 268.58276 * 24 23 21 35 35 H 1.08999 * 110.56889 * 145.70568 * 24 23 21 36 36 H 1.08003 * 119.88105 * 179.70136 * 26 12 11 37 37 H 1.08002 * 120.12963 * 180.27618 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8837 2.3964 -1.2125 6 1 1.8836 2.3964 1.2125 7 6 2.0079 -1.2120 0.0005 8 1 3.0489 -1.2345 0.2874 9 6 1.3519 -2.4072 -0.3745 10 6 1.8257 -3.6499 0.0852 11 6 1.1797 -4.8067 -0.2866 12 6 0.0666 -4.7509 -1.1112 13 16 -0.7500 -6.2404 -1.5796 14 8 0.2107 -7.2803 -1.4573 15 8 -1.4386 -5.9569 -2.7899 16 8 -1.8186 -6.5171 -0.5319 17 6 -2.9126 -5.7160 -0.6327 18 6 -2.9545 -4.5104 0.0519 19 6 -4.0635 -3.6921 -0.0532 20 6 -5.1400 -4.0781 -0.8351 21 6 -5.1002 -5.2879 -1.5234 22 6 -3.9857 -6.1043 -1.4202 23 8 -6.2663 -5.4336 -2.2180 24 6 -7.1864 -4.4978 -1.6256 25 8 -6.3322 -3.4654 -1.0987 26 6 -0.4054 -3.5327 -1.5747 27 6 0.2212 -2.3627 -1.2109 28 1 -0.4850 0.8402 -0.0004 29 1 2.6934 -3.6957 0.7266 30 1 1.5412 -5.7617 0.0653 31 1 -2.1181 -4.2090 0.6650 32 1 -4.0916 -2.7514 0.4764 33 1 -3.9525 -7.0429 -1.9535 34 1 -7.7526 -4.9725 -0.8243 35 1 -7.8580 -4.0906 -2.3813 36 1 -1.2705 -3.5013 -2.2206 37 1 -0.1508 -1.4143 -1.5695 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319016004.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:56 Heat of formation + Delta-G solvation = -118.795963 kcal Electronic energy + Delta-G solvation = -28189.315093 eV Core-core repulsion = 23990.559108 eV Total energy + Delta-G solvation = -4198.755985 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.059 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.33515 -40.44001 -37.67590 -36.88990 -36.59377 -36.40746 -35.33342 -34.13798 -30.80368 -30.33161 -29.59970 -29.49306 -26.03234 -25.89730 -23.47456 -23.23970 -21.65665 -21.23434 -20.56844 -18.43494 -18.00014 -17.91246 -17.68660 -17.28270 -17.09057 -16.52241 -15.74127 -15.59952 -14.95410 -14.56942 -14.35639 -14.17115 -13.99430 -13.54378 -13.39610 -13.20981 -13.10817 -12.91267 -12.63904 -12.44511 -12.26235 -12.13730 -11.85545 -11.57935 -11.48885 -11.39617 -11.28672 -11.15779 -10.97724 -10.84008 -10.46155 -9.81209 -9.58832 -9.56251 -8.98934 -8.18261 -8.05482 -7.77478 -7.23616 -4.88874 0.53743 1.07221 1.37144 2.11923 2.49125 2.81086 2.84930 2.87455 2.91043 3.07191 3.30761 3.42201 3.60650 4.11968 4.31491 4.36176 4.46762 4.67854 4.79515 4.84819 4.97452 5.12937 5.30630 5.37398 5.41663 5.85379 5.94973 6.02175 6.05647 6.12539 6.16365 6.41296 6.60754 6.65839 6.85886 6.95860 6.96894 7.26687 7.34703 7.55805 7.69833 7.88623 8.23888 8.42978 8.56766 9.67314 Molecular weight = 348.06amu Principal moments of inertia in cm(-1) A = 0.011168 B = 0.004105 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2506.539804 B = 6819.856297 C = 8875.160394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.761 5.761 2 C 0.072 3.928 3 Si 0.917 3.083 4 H -0.256 1.256 5 H -0.267 1.267 6 H -0.270 1.270 7 C -0.429 4.429 8 H 0.089 0.911 9 C 0.140 3.860 10 C -0.237 4.237 11 C 0.005 3.995 12 C -0.809 4.809 13 S 2.666 3.334 14 O -0.956 6.956 15 O -0.976 6.976 16 O -0.669 6.669 17 C 0.093 3.907 18 C -0.092 4.092 19 C -0.079 4.079 20 C 0.043 3.957 21 C 0.043 3.957 22 C -0.085 4.085 23 O -0.304 6.304 24 C 0.213 3.787 25 O -0.304 6.304 26 C -0.012 4.012 27 C -0.181 4.181 28 H 0.290 0.710 29 H 0.102 0.898 30 H 0.107 0.893 31 H 0.162 0.838 32 H 0.152 0.848 33 H 0.148 0.852 34 H 0.085 0.915 35 H 0.132 0.868 36 H 0.103 0.897 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.267 -2.800 1.121 11.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.383 5.383 2 C -0.151 4.151 3 Si 0.740 3.260 4 H -0.179 1.179 5 H -0.192 1.192 6 H -0.195 1.195 7 C -0.456 4.456 8 H 0.107 0.893 9 C 0.136 3.864 10 C -0.258 4.258 11 C -0.015 4.015 12 C -0.904 4.904 13 S 2.769 3.231 14 O -0.954 6.954 15 O -0.975 6.975 16 O -0.627 6.627 17 C 0.051 3.949 18 C -0.112 4.112 19 C -0.098 4.098 20 C -0.002 4.002 21 C -0.002 4.002 22 C -0.105 4.105 23 O -0.220 6.220 24 C 0.101 3.899 25 O -0.220 6.220 26 C -0.032 4.032 27 C -0.202 4.202 28 H 0.101 0.899 29 H 0.120 0.880 30 H 0.125 0.875 31 H 0.180 0.820 32 H 0.170 0.830 33 H 0.166 0.834 34 H 0.103 0.897 35 H 0.150 0.850 36 H 0.121 0.879 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -11.789 -3.367 0.748 12.283 hybrid contribution 0.566 1.312 0.171 1.439 sum -11.223 -2.055 0.919 11.446 Atomic orbital electron populations 1.69810 1.07931 1.30445 1.30127 1.26148 0.94928 1.02211 0.91766 0.86098 0.81091 0.79759 0.79082 1.17923 1.19163 1.19459 1.20034 0.98549 0.91134 1.35841 0.89262 1.17883 0.90013 0.92135 0.86351 1.21062 1.04413 0.92596 1.07690 1.20192 0.91884 0.97496 0.91879 1.29233 1.17383 1.15920 1.27820 1.02002 0.73274 0.74910 0.72940 1.93525 1.59507 1.56649 1.85738 1.93544 1.72518 1.86266 1.45133 1.85811 1.38044 1.65297 1.73531 1.17264 0.85673 0.90381 1.01603 1.21293 0.99018 0.91592 0.99288 1.19919 0.90032 1.01394 0.98423 1.19891 0.89528 0.91445 0.99349 1.19192 0.89928 0.95314 0.95766 1.19865 0.90400 1.00516 0.99740 1.87378 1.20272 1.59991 1.54396 1.25665 0.89285 0.78911 0.96069 1.87410 1.21315 1.33382 1.79929 1.20251 0.96704 0.91518 0.94765 1.21323 0.99966 0.96831 1.02033 0.89901 0.88018 0.87540 0.82001 0.83011 0.83419 0.89732 0.85019 0.87872 0.85880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -16.99 10.95 55.55 0.61 -16.38 16 2 C 0.07 1.58 5.14 -17.34 -0.09 1.49 16 3 Si 0.92 16.31 29.59 -169.99 -5.03 11.28 16 4 H -0.26 -4.55 7.11 56.52 0.40 -4.15 16 5 H -0.27 -4.72 7.11 56.52 0.40 -4.32 16 6 H -0.27 -4.71 7.11 56.52 0.40 -4.31 16 7 C -0.43 -10.03 9.05 -37.74 -0.34 -10.37 16 8 H 0.09 1.99 7.91 -52.49 -0.41 1.57 16 9 C 0.14 3.38 5.57 -106.82 -0.60 2.78 16 10 C -0.24 -5.37 9.80 -38.87 -0.38 -5.75 16 11 C 0.01 0.12 9.49 -39.66 -0.38 -0.26 16 12 C -0.81 -17.42 5.29 -39.29 -0.21 -17.63 16 13 S 2.67 53.61 5.42 -107.50 -0.58 53.03 16 14 O -0.96 -21.07 17.25 -66.81 -1.15 -22.22 16 15 O -0.98 -20.67 15.57 -66.81 -1.04 -21.71 16 16 O -0.67 -12.00 10.16 -51.80 -0.53 -12.53 16 17 C 0.09 1.56 4.80 -39.26 -0.19 1.37 16 18 C -0.09 -1.43 8.38 -39.42 -0.33 -1.76 16 19 C -0.08 -1.11 10.05 -39.48 -0.40 -1.51 16 20 C 0.04 0.61 7.15 -39.10 -0.28 0.33 16 21 C 0.04 0.62 7.15 -39.09 -0.28 0.35 16 22 C -0.08 -1.32 9.20 -39.32 -0.36 -1.68 16 23 O -0.30 -3.94 11.40 -45.72 -0.52 -4.46 16 24 C 0.21 1.96 8.89 101.05 0.90 2.86 16 25 O -0.30 -3.84 11.41 -46.04 -0.53 -4.37 16 26 C -0.01 -0.27 8.42 -39.66 -0.33 -0.60 16 27 C -0.18 -4.29 8.70 -38.87 -0.34 -4.63 16 28 H 0.29 5.78 8.30 -40.82 -0.34 5.44 16 29 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 30 H 0.11 2.12 7.60 -52.48 -0.40 1.72 16 31 H 0.16 2.52 7.95 -52.49 -0.42 2.10 16 32 H 0.15 1.83 8.06 -52.49 -0.42 1.41 16 33 H 0.15 2.08 8.06 -52.49 -0.42 1.66 16 34 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.13 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.10 2.16 7.59 -52.48 -0.40 1.76 16 37 H 0.12 2.96 6.16 -52.49 -0.32 2.64 16 LS Contribution 336.11 15.07 5.07 5.07 Total: -1.00 -29.10 336.11 -10.51 -39.61 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -3.20 Total: 7.72 kcal Atomic # 6 Polarization: -31.43 SS G_CDS: -3.60 Total: -35.03 kcal Atomic # 7 Polarization: -16.99 SS G_CDS: 0.61 Total: -16.38 kcal Atomic # 8 Polarization: -61.53 SS G_CDS: -3.77 Total: -65.29 kcal Atomic # 14 Polarization: 16.31 SS G_CDS: -5.03 Total: 11.28 kcal Atomic # 16 Polarization: 53.61 SS G_CDS: -0.58 Total: 53.03 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.10 -10.51 -39.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319016004.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.185 kcal (2) G-P(sol) polarization free energy of solvation -29.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds