Wall clock time and date at job start Wed Apr 1 2020 04:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86793 * 120.00246 * 2 1 4 4 H 1.48500 * 109.47414 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47527 * 299.99813 * 3 2 1 6 6 H 1.48500 * 109.47212 * 59.99684 * 3 2 1 7 7 C 1.39943 * 119.99514 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99920 * 197.85641 * 7 2 1 9 9 C 1.41398 * 120.00154 * 17.86083 * 7 2 1 10 10 C 1.40721 * 120.24322 * 204.37698 * 9 7 2 11 11 C 1.37611 * 119.74202 * 180.02562 * 10 9 7 12 12 C 1.38638 * 120.25040 * 0.02562 * 11 10 9 13 13 S 1.76201 * 119.74820 * 179.97438 * 12 11 10 14 14 O 1.42104 * 106.40395 * 336.45885 * 13 12 11 15 15 O 1.42098 * 106.40080 * 203.54295 * 13 12 11 16 16 O 1.52194 * 107.22289 * 90.00154 * 13 12 11 17 17 C 1.35977 * 114.00114 * 74.99370 * 16 13 12 18 18 C 1.38700 * 119.99009 * 270.02844 * 17 16 13 19 19 C 1.38216 * 120.08359 * 179.75245 * 18 17 16 20 20 C 1.38535 * 120.09688 * 0.45093 * 19 18 17 21 21 C 1.39252 * 119.92114 * 359.54125 * 20 19 18 22 22 C 1.38538 * 119.87854 * 0.23863 * 21 20 19 23 23 O 1.36510 * 108.65065 * 180.25125 * 21 20 19 24 24 C 1.43982 * 105.49651 * 342.70591 * 23 21 20 25 25 O 1.36607 * 131.45915 * 179.85922 * 20 19 18 26 26 C 1.38627 * 120.50162 * 0.25619 * 12 11 10 27 27 C 1.37618 * 120.24906 * 359.44997 * 26 12 11 28 28 H 0.97008 * 119.99442 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.12688 * 359.97438 * 10 9 7 30 30 H 1.08008 * 119.87557 * 180.02562 * 11 10 9 31 31 H 1.07997 * 119.95802 * 359.97438 * 18 17 16 32 32 H 1.07997 * 119.95231 * 180.33631 * 19 18 17 33 33 H 1.08002 * 120.00234 * 180.02562 * 22 21 20 34 34 H 1.08994 * 110.57143 * 268.58276 * 24 23 21 35 35 H 1.08999 * 110.56889 * 145.70568 * 24 23 21 36 36 H 1.08003 * 119.88105 * 179.70136 * 26 12 11 37 37 H 1.08002 * 120.12963 * 180.27618 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8837 2.3964 -1.2125 6 1 1.8836 2.3964 1.2125 7 6 2.0079 -1.2120 0.0005 8 1 3.0489 -1.2345 0.2874 9 6 1.3519 -2.4072 -0.3745 10 6 1.8257 -3.6499 0.0852 11 6 1.1797 -4.8067 -0.2866 12 6 0.0666 -4.7509 -1.1112 13 16 -0.7500 -6.2404 -1.5796 14 8 0.2107 -7.2803 -1.4573 15 8 -1.4386 -5.9569 -2.7899 16 8 -1.8186 -6.5171 -0.5319 17 6 -2.9126 -5.7160 -0.6327 18 6 -2.9545 -4.5104 0.0519 19 6 -4.0635 -3.6921 -0.0532 20 6 -5.1400 -4.0781 -0.8351 21 6 -5.1002 -5.2879 -1.5234 22 6 -3.9857 -6.1043 -1.4202 23 8 -6.2663 -5.4336 -2.2180 24 6 -7.1864 -4.4978 -1.6256 25 8 -6.3322 -3.4654 -1.0987 26 6 -0.4054 -3.5327 -1.5747 27 6 0.2212 -2.3627 -1.2109 28 1 -0.4850 0.8402 -0.0004 29 1 2.6934 -3.6957 0.7266 30 1 1.5412 -5.7617 0.0653 31 1 -2.1181 -4.2090 0.6650 32 1 -4.0916 -2.7514 0.4764 33 1 -3.9525 -7.0429 -1.9535 34 1 -7.7526 -4.9725 -0.8243 35 1 -7.8580 -4.0906 -2.3813 36 1 -1.2705 -3.5013 -2.2206 37 1 -0.1508 -1.4143 -1.5695 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319016004.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:55 Heat of formation + Delta-G solvation = -136.013889 kcal Electronic energy + Delta-G solvation = -28190.061719 eV Core-core repulsion = 23990.559108 eV Total energy + Delta-G solvation = -4199.502611 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.059 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.36275 -41.78837 -39.41122 -38.34601 -38.00215 -37.40654 -37.01644 -35.82643 -32.19763 -31.81562 -31.29690 -30.68221 -27.67584 -26.83445 -24.70921 -24.39303 -23.34675 -22.97566 -21.92729 -19.82849 -19.41063 -19.24028 -19.05357 -18.69088 -18.33049 -17.81762 -17.27102 -16.85628 -16.21683 -15.91587 -15.73055 -15.59368 -15.20027 -15.06779 -14.99441 -14.53438 -14.16791 -14.13365 -14.08169 -13.96677 -13.78988 -13.61692 -13.47286 -13.25799 -13.15277 -12.92895 -12.89168 -12.61547 -12.34410 -11.98607 -11.88629 -11.54644 -11.27476 -11.22555 -10.16408 -9.80400 -9.56032 -9.27089 -8.88301 -6.65325 -0.86656 -0.09083 0.01297 0.41692 1.08139 1.31978 1.39191 1.46352 1.54588 1.73860 2.12811 2.21568 2.37691 2.46547 2.73006 3.20747 3.25452 3.53426 3.61469 3.72438 3.87996 3.97295 4.09958 4.19240 4.31444 4.33958 4.37673 4.71537 4.82264 4.88523 4.92671 4.95926 4.99564 5.09223 5.21972 5.23957 5.52641 5.59013 5.77050 5.89887 5.93956 6.14554 6.48748 6.67825 6.80293 8.06210 Molecular weight = 348.06amu Principal moments of inertia in cm(-1) A = 0.011168 B = 0.004105 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2506.539804 B = 6819.856297 C = 8875.160394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.038 3.962 3 Si 0.987 3.013 4 H -0.256 1.256 5 H -0.263 1.263 6 H -0.261 1.261 7 C -0.456 4.456 8 H 0.092 0.908 9 C 0.115 3.885 10 C -0.252 4.252 11 C 0.000 4.000 12 C -0.816 4.816 13 S 2.694 3.306 14 O -0.976 6.976 15 O -0.987 6.987 16 O -0.661 6.661 17 C 0.064 3.936 18 C -0.095 4.095 19 C -0.080 4.080 20 C 0.050 3.950 21 C 0.041 3.959 22 C -0.094 4.094 23 O -0.314 6.314 24 C 0.202 3.798 25 O -0.311 6.311 26 C -0.008 4.008 27 C -0.200 4.200 28 H 0.300 0.700 29 H 0.113 0.887 30 H 0.124 0.876 31 H 0.157 0.843 32 H 0.170 0.830 33 H 0.157 0.843 34 H 0.116 0.884 35 H 0.169 0.831 36 H 0.111 0.889 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.681 -1.953 1.171 12.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.183 4.183 3 Si 0.807 3.193 4 H -0.179 1.179 5 H -0.187 1.187 6 H -0.185 1.185 7 C -0.482 4.482 8 H 0.110 0.890 9 C 0.111 3.889 10 C -0.272 4.272 11 C -0.020 4.020 12 C -0.909 4.909 13 S 2.795 3.205 14 O -0.974 6.974 15 O -0.986 6.986 16 O -0.619 6.619 17 C 0.022 3.978 18 C -0.116 4.116 19 C -0.098 4.098 20 C 0.005 3.995 21 C -0.004 4.004 22 C -0.115 4.115 23 O -0.230 6.230 24 C 0.092 3.908 25 O -0.228 6.228 26 C -0.028 4.028 27 C -0.220 4.220 28 H 0.112 0.888 29 H 0.131 0.869 30 H 0.141 0.859 31 H 0.174 0.826 32 H 0.188 0.812 33 H 0.175 0.825 34 H 0.133 0.867 35 H 0.186 0.814 36 H 0.129 0.871 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -13.207 -2.522 0.800 13.470 hybrid contribution 0.757 1.018 0.152 1.277 sum -12.450 -1.504 0.952 12.577 Atomic orbital electron populations 1.69822 1.09135 1.31954 1.29739 1.26927 0.95610 1.04899 0.90835 0.85055 0.79526 0.75417 0.79314 1.17938 1.18741 1.18510 1.20305 0.98943 0.92024 1.36949 0.88992 1.18195 0.90595 0.93104 0.86976 1.21263 1.05114 0.92602 1.08264 1.20444 0.91801 0.98026 0.91682 1.29484 1.17596 1.16468 1.27337 1.01266 0.72873 0.73818 0.72556 1.93492 1.60738 1.57044 1.86171 1.93515 1.72672 1.86247 1.46167 1.85758 1.38236 1.65283 1.72650 1.17520 0.85709 0.91092 1.03468 1.21310 0.99500 0.91524 0.99232 1.20075 0.89558 1.01733 0.98466 1.19995 0.89969 0.91160 0.98423 1.19243 0.90288 0.95198 0.95700 1.19991 0.90529 1.01233 0.99709 1.87371 1.20086 1.60986 1.54601 1.26341 0.88299 0.78016 0.98160 1.87406 1.20942 1.34573 1.79837 1.20320 0.96604 0.91391 0.94467 1.21304 1.00740 0.96951 1.03045 0.88833 0.86878 0.85860 0.82561 0.81232 0.82485 0.86664 0.81437 0.87088 0.86822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -35.04 10.95 21.83 0.24 -34.80 16 2 C 0.04 1.66 5.14 85.26 0.44 2.10 16 3 Si 0.99 32.77 29.59 68.60 2.03 34.80 16 4 H -0.26 -8.43 7.11 99.48 0.71 -7.72 16 5 H -0.26 -8.50 7.11 99.48 0.71 -7.80 16 6 H -0.26 -8.23 7.11 99.48 0.71 -7.53 16 7 C -0.46 -21.61 9.05 23.46 0.21 -21.40 16 8 H 0.09 4.15 7.91 -2.91 -0.02 4.13 16 9 C 0.12 5.66 5.57 -21.29 -0.12 5.54 16 10 C -0.25 -11.60 9.80 22.73 0.22 -11.38 16 11 C 0.00 0.01 9.49 22.22 0.21 0.22 16 12 C -0.82 -35.36 5.29 22.46 0.12 -35.24 16 13 S 2.69 107.93 5.42 -56.49 -0.31 107.63 16 14 O -0.98 -42.75 17.25 -118.78 -2.05 -44.80 16 15 O -0.99 -41.53 15.57 -118.78 -1.85 -43.38 16 16 O -0.66 -23.62 10.16 -62.57 -0.64 -24.25 16 17 C 0.06 2.13 4.80 22.48 0.11 2.24 16 18 C -0.10 -2.96 8.38 22.38 0.19 -2.77 16 19 C -0.08 -2.16 10.05 22.34 0.22 -1.94 16 20 C 0.05 1.35 7.15 22.58 0.16 1.51 16 21 C 0.04 1.13 7.15 22.59 0.16 1.30 16 22 C -0.09 -2.86 9.20 22.44 0.21 -2.66 16 23 O -0.31 -7.42 11.40 -76.17 -0.87 -8.29 16 24 C 0.20 3.06 8.89 113.37 1.01 4.06 16 25 O -0.31 -7.06 11.41 -77.32 -0.88 -7.94 16 26 C -0.01 -0.35 8.42 22.22 0.19 -0.16 16 27 C -0.20 -9.69 8.70 22.73 0.20 -9.50 16 28 H 0.30 11.83 8.30 -92.70 -0.77 11.06 16 29 H 0.11 4.78 8.06 -2.91 -0.02 4.75 16 30 H 0.12 4.88 7.60 -2.91 -0.02 4.85 16 31 H 0.16 4.96 7.95 -2.91 -0.02 4.93 16 32 H 0.17 3.88 8.06 -2.91 -0.02 3.86 16 33 H 0.16 4.32 8.06 -2.91 -0.02 4.30 16 34 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.17 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.11 4.70 7.59 -2.91 -0.02 4.67 16 37 H 0.11 5.62 6.16 -2.91 -0.02 5.60 16 Total: -1.00 -61.99 336.11 0.34 -61.65 By element: Atomic # 1 Polarization: 26.34 SS G_CDS: 1.13 Total: 27.47 kcal Atomic # 6 Polarization: -71.60 SS G_CDS: 3.53 Total: -68.08 kcal Atomic # 7 Polarization: -35.04 SS G_CDS: 0.24 Total: -34.80 kcal Atomic # 8 Polarization: -122.38 SS G_CDS: -6.28 Total: -128.66 kcal Atomic # 14 Polarization: 32.77 SS G_CDS: 2.03 Total: 34.80 kcal Atomic # 16 Polarization: 107.93 SS G_CDS: -0.31 Total: 107.63 kcal Total: -61.99 0.34 -61.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319016004.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.362 kcal (2) G-P(sol) polarization free energy of solvation -61.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds