Wall clock time and date at job start Wed Apr 1 2020 05:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00209 * 2 1 4 4 H 1.48496 * 109.47510 * 270.00415 * 3 2 1 5 5 H 1.48505 * 109.46983 * 30.00516 * 3 2 1 6 6 H 1.48507 * 109.47190 * 150.00113 * 3 2 1 7 7 C 1.37880 * 120.00122 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99453 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00238 * 180.02562 * 7 2 1 10 10 N 1.46503 * 109.46949 * 179.97438 * 9 7 2 11 11 C 1.34783 * 119.99648 * 180.02562 * 10 9 7 12 12 O 1.21358 * 120.00156 * 359.97438 * 11 10 9 13 13 C 1.49313 * 119.99677 * 179.97438 * 11 10 9 14 14 O 1.21398 * 120.00111 * 359.97438 * 13 11 10 15 15 N 1.34777 * 120.00029 * 179.97438 * 13 11 10 16 16 C 1.39872 * 120.00053 * 185.27794 * 15 13 11 17 17 C 1.38958 * 119.99381 * 213.64379 * 16 15 13 18 18 C 1.37996 * 119.99908 * 180.23096 * 17 16 15 19 19 C 1.38979 * 119.99967 * 359.47700 * 18 17 16 20 20 S 1.76199 * 120.00307 * 180.29856 * 19 18 17 21 21 C 1.81401 * 102.99938 * 179.97438 * 20 19 18 22 22 F 1.39902 * 109.47178 * 59.99899 * 21 20 19 23 23 F 1.39902 * 109.47212 * 179.97438 * 21 20 19 24 24 F 1.39904 * 109.46842 * 299.99965 * 21 20 19 25 25 C 1.38974 * 119.99108 * 0.27188 * 19 18 17 26 26 C 1.38007 * 119.99683 * 0.02562 * 25 19 18 27 27 H 0.96996 * 119.99961 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.47306 * 59.99252 * 9 7 2 29 29 H 1.09007 * 109.46641 * 299.99540 * 9 7 2 30 30 H 0.96997 * 120.00376 * 359.97438 * 10 9 7 31 31 H 0.97000 * 119.99810 * 5.27752 * 15 13 11 32 32 H 1.07998 * 119.99711 * 0.02562 * 17 16 15 33 33 H 1.08013 * 119.99515 * 179.74801 * 18 17 16 34 34 H 1.08001 * 120.00770 * 180.02562 * 25 19 18 35 35 H 1.08001 * 119.99309 * 179.97438 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9998 -2.5754 -0.0001 11 6 5.3250 -2.8216 0.0009 12 8 6.1136 -1.8992 0.0014 13 6 5.8226 -4.2294 0.0014 14 8 5.0337 -5.1521 0.0013 15 7 7.1477 -4.4757 0.0018 16 6 7.6148 -5.7895 -0.1092 17 6 8.7796 -6.1702 0.5459 18 6 9.2432 -7.4650 0.4326 19 6 8.5392 -8.3911 -0.3278 20 16 9.1268 -10.0465 -0.4662 21 6 7.8883 -10.8312 -1.5343 22 9 7.8489 -10.1699 -2.7665 23 9 8.2295 -12.1728 -1.7363 24 9 6.6315 -10.7559 -0.9242 25 6 7.3715 -8.0115 -0.9787 26 6 6.9114 -6.7149 -0.8702 27 1 -0.4850 0.8400 0.0004 28 1 3.8746 -0.6808 0.8904 29 1 3.8752 -0.6797 -0.8896 30 1 3.3695 -3.3126 -0.0001 31 1 7.7773 -3.7420 0.0791 32 1 9.3239 -5.4519 1.1411 33 1 10.1508 -7.7598 0.9386 34 1 6.8240 -8.7310 -1.5694 35 1 6.0041 -6.4198 -1.3764 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324839756.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:03 Heat of formation + Delta-G solvation = -169.098213 kcal Electronic energy + Delta-G solvation = -26574.841232 eV Core-core repulsion = 21864.339988 eV Total energy + Delta-G solvation = -4710.501244 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.054 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.84466 -48.45969 -48.35803 -41.08539 -39.40188 -38.09068 -35.50194 -34.42067 -32.47136 -31.57862 -30.37218 -28.45606 -27.15088 -25.26008 -23.56426 -22.88141 -21.60134 -20.30317 -19.97926 -19.43293 -19.21943 -18.87516 -17.91680 -17.51707 -16.88883 -16.13624 -15.91639 -15.37313 -15.24860 -15.24211 -15.01386 -14.94616 -14.76833 -14.66412 -14.47544 -14.37514 -14.10733 -14.03787 -13.68553 -13.48750 -13.28957 -12.53428 -12.50576 -12.35293 -11.91423 -11.58926 -11.33763 -11.18222 -11.08809 -10.88617 -10.08702 -9.68113 -9.62381 -9.54618 -9.36118 -8.92024 -8.49290 -8.09312 -6.29978 -4.34397 -0.52600 0.48164 0.88610 1.06763 1.55699 2.35741 2.48007 3.10829 3.19161 3.26630 3.27077 3.28249 3.31609 3.43958 3.79102 4.23692 4.28892 4.37648 4.76655 4.78182 4.90074 5.03192 5.04063 5.41413 5.51260 5.70718 5.81906 5.93819 6.41749 6.51531 6.73813 6.84496 6.89827 7.17954 7.53346 7.89464 8.27276 8.36445 8.69511 9.26965 10.81693 Molecular weight = 348.05amu Principal moments of inertia in cm(-1) A = 0.024564 B = 0.001957 C = 0.001849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.605245 B =14302.859959 C =15139.514920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.080 3.920 3 Si 0.877 3.123 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.550 4.550 8 H 0.083 0.917 9 C 0.218 3.782 10 N -0.662 5.662 11 C 0.494 3.506 12 O -0.536 6.536 13 C 0.510 3.490 14 O -0.496 6.496 15 N -0.652 5.652 16 C 0.166 3.834 17 C -0.125 4.125 18 C -0.060 4.060 19 C -0.129 4.129 20 S -0.026 6.026 21 C 0.451 3.549 22 F -0.162 7.162 23 F -0.148 7.148 24 F -0.161 7.161 25 C -0.097 4.097 26 C -0.099 4.099 27 H 0.269 0.731 28 H 0.034 0.966 29 H 0.030 0.970 30 H 0.411 0.589 31 H 0.426 0.574 32 H 0.142 0.858 33 H 0.139 0.861 34 H 0.129 0.871 35 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.604 -20.209 -1.097 29.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.125 4.125 3 Si 0.703 3.297 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.185 1.185 7 C -0.588 4.588 8 H 0.101 0.899 9 C 0.096 3.904 10 N -0.311 5.311 11 C 0.272 3.728 12 O -0.415 6.415 13 C 0.293 3.707 14 O -0.368 6.368 15 N -0.299 5.299 16 C 0.069 3.931 17 C -0.147 4.147 18 C -0.083 4.083 19 C -0.242 4.242 20 S 0.208 5.792 21 C 0.290 3.710 22 F -0.144 7.144 23 F -0.129 7.129 24 F -0.143 7.143 25 C -0.121 4.121 26 C -0.121 4.121 27 H 0.079 0.921 28 H 0.052 0.948 29 H 0.047 0.953 30 H 0.247 0.753 31 H 0.265 0.735 32 H 0.159 0.841 33 H 0.156 0.844 34 H 0.146 0.854 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 22.216 -20.650 -0.714 30.339 hybrid contribution -0.967 1.301 -0.646 1.745 sum 21.249 -19.348 -1.360 28.770 Atomic orbital electron populations 1.69869 1.06213 1.27599 1.48664 1.24784 0.94825 0.99142 0.93732 0.86820 0.80518 0.83228 0.79123 1.19718 1.20727 1.18506 1.21034 0.88047 0.95574 1.54123 0.89891 1.19740 0.95889 0.77228 0.97505 1.46142 1.04843 1.12439 1.67694 1.19632 0.84742 0.87802 0.80578 1.90737 1.55303 1.44984 1.50519 1.20845 0.82368 0.91096 0.76398 1.90788 1.54970 1.45844 1.45237 1.43307 1.07932 1.07439 1.71230 1.17879 0.94705 0.84783 0.95695 1.20875 0.97165 0.96347 1.00340 1.20421 0.99210 0.91405 0.97313 1.21353 1.00650 0.95531 1.06619 1.86578 1.28797 1.04801 1.59014 1.22871 0.85118 0.80138 0.82915 1.93339 1.96412 1.79812 1.44854 1.93271 1.91822 1.32876 1.94966 1.93354 1.42951 1.95761 1.82192 1.21203 0.94389 0.97340 0.99145 1.21111 1.00940 0.92194 0.97843 0.92065 0.94821 0.95266 0.75317 0.73535 0.84058 0.84367 0.85356 0.83551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.73 13.96 55.43 0.77 -24.96 16 2 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 3 Si 0.88 20.44 27.47 -169.99 -4.67 15.78 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.26 -5.93 6.54 56.52 0.37 -5.56 16 7 C -0.55 -14.63 9.83 -34.44 -0.34 -14.97 16 8 H 0.08 2.33 7.84 -52.49 -0.41 1.92 16 9 C 0.22 5.05 4.50 -5.19 -0.02 5.03 16 10 N -0.66 -13.08 5.54 -61.95 -0.34 -13.42 16 11 C 0.49 8.79 7.88 -11.65 -0.09 8.70 16 12 O -0.54 -10.41 16.48 5.49 0.09 -10.32 16 13 C 0.51 7.61 7.62 -11.65 -0.09 7.52 16 14 O -0.50 -8.16 14.16 5.45 0.08 -8.08 16 15 N -0.65 -7.52 5.33 -10.26 -0.05 -7.58 16 16 C 0.17 1.78 6.28 -83.66 -0.53 1.26 16 17 C -0.13 -1.01 9.96 -39.40 -0.39 -1.41 16 18 C -0.06 -0.46 9.78 -39.40 -0.39 -0.84 16 19 C -0.13 -1.16 6.11 -39.03 -0.24 -1.40 16 20 S -0.03 -0.20 21.96 -107.50 -2.36 -2.57 16 21 C 0.45 3.87 2.98 101.05 0.30 4.17 16 22 F -0.16 -1.47 15.62 2.25 0.04 -1.44 16 23 F -0.15 -1.23 17.36 2.25 0.04 -1.20 16 24 F -0.16 -1.53 15.62 2.25 0.04 -1.50 16 25 C -0.10 -1.01 8.68 -39.39 -0.34 -1.36 16 26 C -0.10 -1.15 8.65 -39.41 -0.34 -1.49 16 27 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 28 H 0.03 0.81 7.20 -51.93 -0.37 0.43 16 29 H 0.03 0.69 7.57 -51.93 -0.39 0.30 16 30 H 0.41 7.73 7.79 -40.82 -0.32 7.41 16 31 H 0.43 4.12 8.30 -40.82 -0.34 3.78 16 32 H 0.14 0.79 8.06 -52.49 -0.42 0.36 16 33 H 0.14 0.71 8.06 -52.48 -0.42 0.29 16 34 H 0.13 1.29 4.54 -52.49 -0.24 1.05 16 35 H 0.15 1.87 6.41 -52.49 -0.34 1.53 16 LS Contribution 336.05 15.07 5.06 5.06 Total: -1.00 -30.10 336.05 -6.30 -36.40 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -2.42 Total: 6.53 kcal Atomic # 6 Polarization: 9.86 SS G_CDS: -2.56 Total: 7.29 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: 0.38 Total: -45.96 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: 0.17 Total: -18.41 kcal Atomic # 9 Polarization: -4.24 SS G_CDS: 0.11 Total: -4.13 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.67 Total: 15.78 kcal Atomic # 16 Polarization: -0.20 SS G_CDS: -2.36 Total: -2.57 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.10 -6.30 -36.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324839756.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.703 kcal (2) G-P(sol) polarization free energy of solvation -30.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds