Wall clock time and date at job start Wed Apr 1 2020 05:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00209 * 2 1 4 4 H 1.48496 * 109.47510 * 270.00415 * 3 2 1 5 5 H 1.48505 * 109.46983 * 30.00516 * 3 2 1 6 6 H 1.48507 * 109.47190 * 150.00113 * 3 2 1 7 7 C 1.37880 * 120.00122 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99453 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00238 * 180.02562 * 7 2 1 10 10 N 1.46503 * 109.46949 * 179.97438 * 9 7 2 11 11 C 1.34783 * 119.99648 * 180.02562 * 10 9 7 12 12 O 1.21358 * 120.00156 * 359.97438 * 11 10 9 13 13 C 1.49313 * 119.99677 * 179.97438 * 11 10 9 14 14 O 1.21398 * 120.00111 * 359.97438 * 13 11 10 15 15 N 1.34777 * 120.00029 * 179.97438 * 13 11 10 16 16 C 1.39872 * 120.00053 * 185.27794 * 15 13 11 17 17 C 1.38958 * 119.99381 * 213.64379 * 16 15 13 18 18 C 1.37996 * 119.99908 * 180.23096 * 17 16 15 19 19 C 1.38979 * 119.99967 * 359.47700 * 18 17 16 20 20 S 1.76199 * 120.00307 * 180.29856 * 19 18 17 21 21 C 1.81401 * 102.99938 * 179.97438 * 20 19 18 22 22 F 1.39902 * 109.47178 * 59.99899 * 21 20 19 23 23 F 1.39902 * 109.47212 * 179.97438 * 21 20 19 24 24 F 1.39904 * 109.46842 * 299.99965 * 21 20 19 25 25 C 1.38974 * 119.99108 * 0.27188 * 19 18 17 26 26 C 1.38007 * 119.99683 * 0.02562 * 25 19 18 27 27 H 0.96996 * 119.99961 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.47306 * 59.99252 * 9 7 2 29 29 H 1.09007 * 109.46641 * 299.99540 * 9 7 2 30 30 H 0.96997 * 120.00376 * 359.97438 * 10 9 7 31 31 H 0.97000 * 119.99810 * 5.27752 * 15 13 11 32 32 H 1.07998 * 119.99711 * 0.02562 * 17 16 15 33 33 H 1.08013 * 119.99515 * 179.74801 * 18 17 16 34 34 H 1.08001 * 120.00770 * 180.02562 * 25 19 18 35 35 H 1.08001 * 119.99309 * 179.97438 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9998 -2.5754 -0.0001 11 6 5.3250 -2.8216 0.0009 12 8 6.1136 -1.8992 0.0014 13 6 5.8226 -4.2294 0.0014 14 8 5.0337 -5.1521 0.0013 15 7 7.1477 -4.4757 0.0018 16 6 7.6148 -5.7895 -0.1092 17 6 8.7796 -6.1702 0.5459 18 6 9.2432 -7.4650 0.4326 19 6 8.5392 -8.3911 -0.3278 20 16 9.1268 -10.0465 -0.4662 21 6 7.8883 -10.8312 -1.5343 22 9 7.8489 -10.1699 -2.7665 23 9 8.2295 -12.1728 -1.7363 24 9 6.6315 -10.7559 -0.9242 25 6 7.3715 -8.0115 -0.9787 26 6 6.9114 -6.7149 -0.8702 27 1 -0.4850 0.8400 0.0004 28 1 3.8746 -0.6808 0.8904 29 1 3.8752 -0.6797 -0.8896 30 1 3.3695 -3.3126 -0.0001 31 1 7.7773 -3.7420 0.0791 32 1 9.3239 -5.4519 1.1411 33 1 10.1508 -7.7598 0.9386 34 1 6.8240 -8.7310 -1.5694 35 1 6.0041 -6.4198 -1.3764 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324839756.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:02 Heat of formation + Delta-G solvation = -189.605178 kcal Electronic energy + Delta-G solvation = -26575.730480 eV Core-core repulsion = 21864.339988 eV Total energy + Delta-G solvation = -4711.390492 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.054 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -51.53818 -49.14309 -49.07179 -42.20595 -40.51478 -39.29167 -36.76731 -35.88502 -34.43941 -32.29294 -31.26138 -30.27701 -27.84559 -26.58316 -24.49429 -24.06896 -22.98103 -21.56339 -20.77113 -20.29113 -20.02731 -19.91850 -18.85309 -18.62500 -18.33572 -17.44036 -17.21847 -16.89953 -16.22699 -16.05169 -15.95897 -15.87918 -15.65464 -15.53091 -15.46619 -15.18247 -15.17496 -15.03955 -14.76084 -14.43672 -14.41731 -14.37579 -14.02786 -13.32129 -13.12389 -12.78368 -12.70573 -12.64975 -12.11095 -11.93208 -11.91147 -11.70844 -10.93912 -10.83834 -10.45128 -10.20051 -10.19102 -8.81781 -8.40285 -6.50081 -1.18546 -0.37627 0.16896 0.36019 0.38273 1.17046 1.36586 1.38599 1.49680 1.80533 1.97642 2.28417 2.46887 2.56975 2.59320 2.59782 2.94718 3.32716 3.59687 3.70104 4.06616 4.16477 4.28906 4.63796 4.64620 4.82973 4.94994 4.98288 5.04743 5.10744 5.13229 5.22954 5.61780 5.79011 6.03475 6.40214 6.50914 6.63961 6.86135 7.16396 8.74639 Molecular weight = 348.05amu Principal moments of inertia in cm(-1) A = 0.024564 B = 0.001957 C = 0.001849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.605245 B =14302.859959 C =15139.514920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.024 3.976 3 Si 0.944 3.056 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.250 1.250 7 C -0.556 4.556 8 H 0.053 0.947 9 C 0.229 3.771 10 N -0.672 5.672 11 C 0.500 3.500 12 O -0.548 6.548 13 C 0.519 3.481 14 O -0.516 6.516 15 N -0.632 5.632 16 C 0.143 3.857 17 C -0.108 4.108 18 C -0.053 4.053 19 C -0.136 4.136 20 S 0.012 5.988 21 C 0.444 3.556 22 F -0.167 7.167 23 F -0.147 7.147 24 F -0.169 7.169 25 C -0.110 4.110 26 C -0.117 4.117 27 H 0.273 0.727 28 H 0.032 0.968 29 H 0.030 0.970 30 H 0.413 0.587 31 H 0.436 0.564 32 H 0.174 0.826 33 H 0.173 0.827 34 H 0.125 0.875 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.927 -20.292 -0.327 32.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.176 4.176 3 Si 0.766 3.234 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.173 1.173 7 C -0.593 4.593 8 H 0.071 0.929 9 C 0.106 3.894 10 N -0.321 5.321 11 C 0.280 3.720 12 O -0.428 6.428 13 C 0.301 3.699 14 O -0.390 6.390 15 N -0.279 5.279 16 C 0.048 3.952 17 C -0.130 4.130 18 C -0.077 4.077 19 C -0.249 4.249 20 S 0.247 5.753 21 C 0.283 3.717 22 F -0.149 7.149 23 F -0.129 7.129 24 F -0.151 7.151 25 C -0.133 4.133 26 C -0.138 4.138 27 H 0.083 0.917 28 H 0.050 0.950 29 H 0.048 0.952 30 H 0.250 0.750 31 H 0.277 0.723 32 H 0.192 0.808 33 H 0.190 0.810 34 H 0.143 0.857 35 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 25.598 -20.769 0.051 32.964 hybrid contribution -1.925 1.151 -0.894 2.414 sum 23.673 -19.619 -0.843 30.757 Atomic orbital electron populations 1.69996 1.08004 1.28823 1.50190 1.25692 0.95616 1.03052 0.93285 0.85767 0.79465 0.78495 0.79641 1.18775 1.20104 1.17327 1.21254 0.89977 0.94615 1.53502 0.92861 1.19388 0.93546 0.79161 0.97266 1.45977 1.05990 1.11224 1.68950 1.20007 0.83724 0.89144 0.79157 1.90720 1.55422 1.45967 1.50679 1.20148 0.83526 0.89182 0.77038 1.90798 1.55791 1.45714 1.46746 1.43083 1.06581 1.08494 1.69776 1.18042 0.96044 0.83959 0.97196 1.21218 0.95625 0.97140 0.99011 1.20849 0.99787 0.90720 0.96303 1.21641 1.00206 0.96851 1.06158 1.86470 1.27355 1.03253 1.58238 1.23116 0.85254 0.80325 0.83048 1.93331 1.96445 1.79901 1.45242 1.93272 1.91763 1.32846 1.94990 1.93340 1.43658 1.95805 1.82291 1.21182 0.95310 0.96878 0.99950 1.21031 1.00814 0.93179 0.98809 0.91749 0.95020 0.95219 0.75024 0.72305 0.80819 0.80998 0.85744 0.85632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.19 13.96 21.45 0.30 -54.89 16 2 C 0.02 1.33 5.47 84.66 0.46 1.79 16 3 Si 0.94 41.87 27.47 68.60 1.88 43.76 16 4 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 5 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 6 H -0.25 -10.55 6.54 99.48 0.65 -9.90 16 7 C -0.56 -30.19 9.83 25.60 0.25 -29.94 16 8 H 0.05 3.13 7.84 -2.91 -0.02 3.11 16 9 C 0.23 10.59 4.50 85.63 0.38 10.98 16 10 N -0.67 -26.74 5.54 -468.27 -2.60 -29.33 16 11 C 0.50 17.52 7.88 87.23 0.69 18.21 16 12 O -0.55 -20.58 16.48 -3.27 -0.05 -20.64 16 13 C 0.52 15.23 7.62 87.23 0.66 15.89 16 14 O -0.52 -17.18 14.16 -3.40 -0.05 -17.22 16 15 N -0.63 -13.61 5.33 -304.71 -1.62 -15.23 16 16 C 0.14 2.83 6.28 38.20 0.24 3.07 16 17 C -0.11 -1.37 9.96 22.39 0.22 -1.15 16 18 C -0.05 -0.61 9.78 22.39 0.22 -0.39 16 19 C -0.14 -2.15 6.11 22.62 0.14 -2.01 16 20 S 0.01 0.16 21.96 -56.49 -1.24 -1.08 16 21 C 0.44 7.19 2.98 113.37 0.34 7.53 16 22 F -0.17 -2.95 15.62 44.97 0.70 -2.25 16 23 F -0.15 -2.31 17.36 44.97 0.78 -1.53 16 24 F -0.17 -3.16 15.62 44.97 0.70 -2.46 16 25 C -0.11 -2.22 8.68 22.39 0.19 -2.02 16 26 C -0.12 -2.69 8.65 22.38 0.19 -2.49 16 27 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 28 H 0.03 1.49 7.20 -2.39 -0.02 1.47 16 29 H 0.03 1.38 7.57 -2.38 -0.02 1.36 16 30 H 0.41 16.02 7.79 -92.71 -0.72 15.30 16 31 H 0.44 7.44 8.30 -92.71 -0.77 6.67 16 32 H 0.17 1.07 8.06 -2.91 -0.02 1.04 16 33 H 0.17 0.86 8.06 -2.90 -0.02 0.83 16 34 H 0.12 2.52 4.54 -2.91 -0.01 2.51 16 35 H 0.13 3.37 6.41 -2.91 -0.02 3.35 16 Total: -1.00 -65.60 336.05 2.47 -63.13 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: -0.33 Total: 18.28 kcal Atomic # 6 Polarization: 15.47 SS G_CDS: 4.00 Total: 19.46 kcal Atomic # 7 Polarization: -95.53 SS G_CDS: -3.92 Total: -99.45 kcal Atomic # 8 Polarization: -37.76 SS G_CDS: -0.10 Total: -37.86 kcal Atomic # 9 Polarization: -8.42 SS G_CDS: 2.19 Total: -6.24 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 1.88 Total: 43.76 kcal Atomic # 16 Polarization: 0.16 SS G_CDS: -1.24 Total: -1.08 kcal Total: -65.60 2.47 -63.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324839756.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.474 kcal (2) G-P(sol) polarization free energy of solvation -65.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds