Wall clock time and date at job start Wed Apr 1 2020 06:58:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81403 * 1
3 3 O 1.42098 * 110.54534 * 2 1
4 4 O 1.42107 * 110.53949 * 223.25409 * 2 1 3
5 5 C 1.76192 * 104.45487 * 111.62803 * 2 1 3
6 6 N 1.29423 * 125.69638 * 89.95413 * 5 2 1
7 7 N 1.26394 * 116.47809 * 180.02562 * 6 5 2
8 8 C 1.29424 * 116.47211 * 0.02562 * 7 6 5
9 9 C 1.50703 * 125.69404 * 179.97438 * 8 7 6
10 10 O 1.45198 * 109.46859 * 90.02318 * 9 8 7
11 11 C 1.34232 * 116.99902 * 180.02562 * 10 9 8
12 12 O 1.20821 * 120.00130 * 359.97438 * 11 10 9
13 13 C 1.50698 * 119.99965 * 180.02562 * 11 10 9
14 14 C 1.53002 * 109.47162 * 179.97438 * 13 11 10
15 15 C 1.53007 * 109.47090 * 179.97438 * 14 13 11
16 16 C 1.52997 * 109.46707 * 180.02562 * 15 14 13
17 17 C 1.50698 * 109.46779 * 180.02562 * 16 15 14
18 18 H 1.07998 * 120.00257 * 359.97438 * 17 16 15
19 19 C 1.37881 * 120.00307 * 179.97438 * 17 16 15
20 20 N 1.31510 * 120.00674 * 180.02562 * 19 17 16
21 21 Si 1.86804 * 119.99462 * 0.02562 * 19 17 16
22 22 H 1.48500 * 109.47350 * 90.00220 * 21 19 17
23 23 H 1.48508 * 109.46899 * 209.99817 * 21 19 17
24 24 H 1.48493 * 109.47369 * 329.99932 * 21 19 17
25 25 S 1.71209 * 108.60774 * 359.97438 * 8 7 6
26 26 H 1.08996 * 109.46369 * 308.36807 * 1 2 3
27 27 H 1.08998 * 109.47409 * 68.36741 * 1 2 3
28 28 H 1.08995 * 109.47180 * 188.37581 * 1 2 3
29 29 H 1.09000 * 109.46941 * 210.02256 * 9 8 7
30 30 H 1.09000 * 109.47019 * 330.02828 * 9 8 7
31 31 H 1.09002 * 109.47589 * 300.00299 * 13 11 10
32 32 H 1.09012 * 109.47123 * 59.99933 * 13 11 10
33 33 H 1.08997 * 109.47565 * 300.00348 * 14 13 11
34 34 H 1.09000 * 109.46510 * 60.00483 * 14 13 11
35 35 H 1.08997 * 109.47312 * 300.00640 * 15 14 13
36 36 H 1.08995 * 109.46901 * 60.00391 * 15 14 13
37 37 H 1.08997 * 109.47493 * 300.00206 * 16 15 14
38 38 H 1.08995 * 109.47385 * 60.00364 * 16 15 14
39 39 H 0.96996 * 120.00514 * 180.02562 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8140 0.0000 0.0000
3 8 2.3127 1.3306 0.0000
4 8 2.3126 -0.9692 -0.9119
5 6 2.2538 -0.6288 1.5860
6 7 2.4415 -1.8755 1.8786
7 7 2.7526 -2.1326 3.0764
8 6 2.8484 -1.1207 3.8775
9 6 3.2044 -1.1879 5.3403
10 8 4.6446 -1.0836 5.4932
11 6 5.1293 -1.1273 6.7442
12 8 4.3752 -1.2482 7.6804
13 6 6.6140 -1.0244 6.9810
14 6 6.8974 -1.1000 8.4826
15 6 8.4049 -0.9962 8.7229
16 6 8.6883 -1.0725 10.2245
17 6 10.1730 -0.9696 10.4613
18 1 10.8471 -0.8611 9.6245
19 6 10.6710 -1.0140 11.7463
20 7 11.9666 -0.9237 11.9530
21 14 9.5051 -1.2023 13.1936
22 1 9.3078 -2.6448 13.4859
23 1 10.0829 -0.5304 14.3853
24 1 8.1980 -0.5815 12.8604
25 16 2.5033 0.3071 2.9979
26 1 -0.3632 0.6379 0.8057
27 1 -0.3634 0.3788 -0.9552
28 1 -0.3633 -1.0167 0.1497
29 1 2.7224 -0.3660 5.8697
30 1 2.8629 -2.1367 5.7541
31 1 7.1207 -1.8452 6.4734
32 1 6.9794 -0.0747 6.5900
33 1 6.3909 -0.2790 8.9898
34 1 6.5321 -2.0495 8.8738
35 1 8.9112 -1.8175 8.2158
36 1 8.7707 -0.0470 8.3316
37 1 8.1821 -0.2514 10.7320
38 1 8.3226 -2.0219 10.6155
39 1 12.3169 -0.9552 12.8569
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001326553628.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 06:58:31
Heat of formation + Delta-G solvation = -126.810501 kcal
Electronic energy + Delta-G solvation = -24134.541536 eV
Core-core repulsion = 20103.174716 eV
Total energy + Delta-G solvation = -4031.366819 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 348.069 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-42.81878 -41.70154 -38.38321 -38.13054 -37.27257 -36.68673 -34.66955 -34.06157
-32.09293 -30.63605 -30.19431 -28.04948 -26.68452 -24.25398 -23.05591 -22.02435
-21.56673 -20.97443 -20.11830 -19.00426 -18.83437 -18.72420 -17.89720 -17.75884
-17.42311 -16.80830 -16.71379 -16.33417 -16.24836 -15.66972 -14.90879 -14.81479
-14.69619 -14.12917 -14.09826 -14.05198 -13.88648 -13.78602 -13.51440 -13.43661
-13.35222 -13.21696 -12.88559 -12.37966 -12.29606 -12.26345 -12.13109 -11.93386
-11.82415 -11.75709 -11.72534 -11.68515 -11.40194 -11.33948 -11.25474 -11.12654
-10.75332 -8.28702 -6.32337 -1.55376 -1.23049 -0.61978 -0.26714 0.73279
1.04985 1.36306 1.37621 1.40434 1.49996 1.55931 2.36742 2.57920
2.65569 2.90712 3.06945 3.36839 3.57648 3.62330 3.91715 3.96405
4.03295 4.06246 4.08868 4.16984 4.47776 4.58987 4.73259 4.80503
4.88786 5.05524 5.09904 5.17923 5.27997 5.60007 5.65399 5.69169
6.30135 6.54990 6.76452 6.87815 7.32625 8.87954
Molecular weight = 348.07amu
Principal moments of inertia in cm(-1)
A = 0.033901 B = 0.001512 C = 0.001487
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 825.725576 B =18519.099779 C =18827.814187
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.605 4.605
2 S 2.513 3.487
3 O -0.941 6.941
4 O -0.948 6.948
5 C -0.611 4.611
6 N -0.171 5.171
7 N -0.274 5.274
8 C -0.022 4.022
9 C 0.136 3.864
10 O -0.357 6.357
11 C 0.476 3.524
12 O -0.526 6.526
13 C -0.107 4.107
14 C -0.101 4.101
15 C -0.096 4.096
16 C -0.017 4.017
17 C -0.533 4.533
18 H 0.035 0.965
19 C 0.002 3.998
20 N -0.952 5.952
21 Si 0.950 3.050
22 H -0.268 1.268
23 H -0.284 1.284
24 H -0.247 1.247
25 S 0.410 5.590
26 H 0.168 0.832
27 H 0.175 0.825
28 H 0.156 0.844
29 H 0.132 0.868
30 H 0.113 0.887
31 H 0.124 0.876
32 H 0.131 0.869
33 H 0.065 0.935
34 H 0.061 0.939
35 H 0.056 0.944
36 H 0.059 0.941
37 H 0.019 0.981
38 H 0.015 0.985
39 H 0.266 0.734
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -33.053 5.788 -25.274 42.009
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.762 4.762
2 S 2.685 3.315
3 O -0.938 6.938
4 O -0.946 6.946
5 C -0.962 4.962
6 N -0.015 5.015
7 N -0.120 5.120
8 C -0.296 4.296
9 C 0.058 3.942
10 O -0.274 6.274
11 C 0.321 3.679
12 O -0.414 6.414
13 C -0.144 4.144
14 C -0.139 4.139
15 C -0.134 4.134
16 C -0.054 4.054
17 C -0.571 4.571
18 H 0.053 0.947
19 C -0.194 4.194
20 N -0.593 5.593
21 Si 0.773 3.227
22 H -0.194 1.194
23 H -0.210 1.210
24 H -0.171 1.171
25 S 0.654 5.346
26 H 0.186 0.814
27 H 0.192 0.808
28 H 0.174 0.826
29 H 0.150 0.850
30 H 0.131 0.869
31 H 0.142 0.858
32 H 0.149 0.851
33 H 0.084 0.916
34 H 0.080 0.920
35 H 0.075 0.925
36 H 0.078 0.922
37 H 0.037 0.963
38 H 0.033 0.967
39 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges -32.511 5.693 -25.492 41.704
hybrid contribution 0.033 -0.848 1.507 1.730
sum -32.477 4.845 -23.984 40.663
Atomic orbital electron populations
1.29987 1.15268 1.15109 1.15837 1.05837 0.81767 0.73163 0.70765
1.93633 1.80531 1.35431 1.84170 1.93592 1.80263 1.62122 1.58579
1.41937 1.20818 1.02471 1.30952 1.71609 1.06493 1.14917 1.08518
1.71545 1.14205 1.29250 0.96973 1.29410 1.02407 0.94502 1.03303
1.21410 0.79592 1.07515 0.85658 1.86551 1.24539 1.84069 1.32279
1.24239 0.93155 0.71164 0.79384 1.90693 1.60728 1.46002 1.43948
1.21560 0.86108 1.07965 0.98795 1.21405 0.96104 1.02850 0.93537
1.21341 0.94222 1.01587 0.96248 1.19570 0.94031 0.96370 0.95436
1.21575 0.93068 1.49474 0.93001 0.94698 1.26030 0.96655 0.94349
1.02400 1.70067 1.14165 1.52692 1.22366 0.85664 0.79932 0.79055
0.78028 1.19363 1.20956 1.17065 1.83392 1.52027 1.05771 0.93395
0.81370 0.80757 0.82577 0.85001 0.86863 0.85814 0.85139 0.91611
0.92031 0.92511 0.92177 0.96310 0.96658 0.92568
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.61 2.05 10.80 113.37 1.22 3.27 16
2 S 2.51 24.23 5.97 -56.49 -0.34 23.90 16
3 O -0.94 -13.03 17.75 -127.65 -2.27 -15.30 16
4 O -0.95 -18.22 17.93 -127.65 -2.29 -20.50 16
5 C -0.61 -8.64 7.18 130.60 0.94 -7.70 16
6 N -0.17 -3.58 11.63 -58.65 -0.68 -4.26 16
7 N -0.27 -5.99 11.66 -50.85 -0.59 -6.58 16
8 C -0.02 -0.34 7.17 88.46 0.63 0.29 16
9 C 0.14 1.99 6.06 71.24 0.43 2.43 16
10 O -0.36 -6.87 10.20 -51.44 -0.52 -7.40 16
11 C 0.48 10.40 7.96 71.24 0.57 10.96 16
12 O -0.53 -14.14 15.73 21.98 0.35 -13.80 16
13 C -0.11 -2.20 5.81 29.85 0.17 -2.02 16
14 C -0.10 -2.85 4.50 30.60 0.14 -2.71 16
15 C -0.10 -3.45 5.15 30.60 0.16 -3.29 16
16 C -0.02 -0.77 4.04 29.85 0.12 -0.65 16
17 C -0.53 -30.81 9.66 25.60 0.25 -30.57 16
18 H 0.03 2.20 7.99 -2.91 -0.02 2.17 16
19 C 0.00 0.13 5.47 84.66 0.46 0.59 16
20 N -0.95 -60.18 13.96 21.45 0.30 -59.88 16
21 Si 0.95 44.77 27.47 68.60 1.88 46.65 16
22 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16
23 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16
24 H -0.25 -10.84 6.54 99.48 0.65 -10.19 16
25 S 0.41 4.19 22.84 -56.49 -1.29 2.90 16
26 H 0.17 -1.49 8.14 -2.39 -0.02 -1.51 16
27 H 0.17 -1.39 8.14 -2.39 -0.02 -1.41 16
28 H 0.16 -0.77 8.14 -2.39 -0.02 -0.79 16
29 H 0.13 1.19 8.13 -2.39 -0.02 1.17 16
30 H 0.11 1.68 8.13 -2.39 -0.02 1.66 16
31 H 0.12 2.21 8.14 -2.39 -0.02 2.20 16
32 H 0.13 2.13 8.14 -2.38 -0.02 2.11 16
33 H 0.07 1.89 8.10 -2.39 -0.02 1.87 16
34 H 0.06 1.81 8.10 -2.39 -0.02 1.79 16
35 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16
36 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16
37 H 0.02 0.85 7.20 -2.39 -0.02 0.83 16
38 H 0.02 0.69 7.57 -2.39 -0.02 0.67 16
39 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16
Total: -1.00 -88.70 370.22 0.66 -88.03
By element:
Atomic # 1 Polarization: -5.37 SS G_CDS: 1.02 Total: -4.35 kcal
Atomic # 6 Polarization: -34.50 SS G_CDS: 5.09 Total: -29.40 kcal
Atomic # 7 Polarization: -69.74 SS G_CDS: -0.98 Total: -70.72 kcal
Atomic # 8 Polarization: -52.26 SS G_CDS: -4.73 Total: -57.00 kcal
Atomic # 14 Polarization: 44.77 SS G_CDS: 1.88 Total: 46.65 kcal
Atomic # 16 Polarization: 28.42 SS G_CDS: -1.63 Total: 26.79 kcal
Total: -88.70 0.66 -88.03 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001326553628.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -38.779 kcal
(2) G-P(sol) polarization free energy of solvation -88.695 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.475 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.664 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.031 kcal
(6) G-S(sol) free energy of system = (1) + (5) -126.811 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds