Wall clock time and date at job start Wed Apr 1 2020 04:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 120.00110 * 2 1 4 4 H 1.48501 * 109.47123 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47484 * 299.99824 * 3 2 1 6 6 H 1.48497 * 109.47117 * 60.00391 * 3 2 1 7 7 C 1.38734 * 119.99926 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00156 * 179.97438 * 7 2 1 9 9 S 1.76200 * 119.99683 * 0.02562 * 7 2 1 10 10 C 1.76200 * 99.99665 * 185.11877 * 9 7 2 11 11 C 1.39225 * 120.02028 * 265.53109 * 10 9 7 12 12 C 1.38137 * 120.20072 * 180.02562 * 11 10 9 13 13 C 1.38092 * 120.24441 * 359.67003 * 12 11 10 14 14 C 1.39632 * 120.03674 * 0.60580 * 13 12 11 15 15 C 1.47859 * 120.10112 * 179.69536 * 14 13 12 16 16 O 1.21551 * 119.99872 * 179.72834 * 15 14 13 17 17 N 1.34773 * 120.00146 * 359.72327 * 15 14 13 18 18 C 1.46503 * 120.00063 * 180.02562 * 17 15 14 19 19 C 1.50698 * 109.46892 * 180.02562 * 18 17 15 20 20 O 1.21432 * 120.00464 * 0.02562 * 19 18 17 21 21 C 1.41383 * 120.00086 * 179.97438 * 19 18 17 22 22 C 1.37199 * 126.20258 * 180.02562 * 21 19 18 23 23 N 1.30764 * 113.86338 * 179.73574 * 22 21 19 24 24 C 1.29484 * 117.51177 * 359.97438 * 23 22 21 25 25 S 1.70910 * 110.64075 * 359.97438 * 24 23 22 26 26 C 1.38835 * 120.02269 * 85.50811 * 10 9 7 27 27 H 0.97003 * 119.99904 * 0.02562 * 1 2 3 28 28 H 1.07997 * 119.90082 * 359.97438 * 11 10 9 29 29 H 1.08006 * 119.87941 * 180.02562 * 12 11 10 30 30 H 1.08000 * 119.97835 * 180.30122 * 13 12 11 31 31 H 0.97004 * 119.99864 * 0.02562 * 17 15 14 32 32 H 1.08998 * 109.47164 * 60.00148 * 18 17 15 33 33 H 1.08999 * 109.47295 * 299.99905 * 18 17 15 34 34 H 1.08002 * 123.06185 * 359.73513 * 22 21 19 35 35 H 1.08002 * 124.67504 * 179.97438 * 24 23 22 36 36 H 1.07998 * 120.11919 * 0.04173 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0099 -1.2015 -0.0005 8 1 3.0899 -1.2015 -0.0010 9 16 1.1288 -2.7274 -0.0019 10 6 2.4725 -3.8566 0.1527 11 6 3.0367 -4.4278 -0.9848 12 6 4.0899 -5.3140 -0.8679 13 6 4.5947 -5.6341 0.3770 14 6 4.0327 -5.0716 1.5248 15 6 4.5678 -5.4185 2.8588 16 8 4.0804 -4.9239 3.8565 17 7 5.5957 -6.2832 2.9686 18 6 6.1254 -6.6273 4.2905 19 6 7.2622 -7.6047 4.1371 20 8 7.5977 -7.9772 3.0311 21 6 7.9389 -8.0871 5.2809 22 6 8.9854 -8.9743 5.2893 23 7 9.4341 -9.2518 6.4857 24 6 8.8561 -8.6743 7.4902 25 16 7.5970 -7.6506 6.9537 26 6 2.9696 -4.1770 1.4088 27 1 -0.4850 0.8401 -0.0004 28 1 2.6492 -4.1780 -1.9614 29 1 4.5239 -5.7537 -1.7537 30 1 5.4214 -6.3237 0.4631 31 1 5.9848 -6.6776 2.1724 32 1 5.3363 -7.0787 4.8919 33 1 6.4868 -5.7248 4.7834 34 1 9.4007 -9.4041 4.3897 35 1 9.1317 -8.8194 8.5243 36 1 2.5338 -3.7357 2.2928 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364366579.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:19 Heat of formation + Delta-G solvation = 5.070152 kcal Electronic energy + Delta-G solvation = -23271.924121 eV Core-core repulsion = 19553.584996 eV Total energy + Delta-G solvation = -3718.339125 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 348.039 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.93908 -40.05919 -39.22452 -37.79368 -34.71104 -32.51019 -32.04205 -31.04291 -30.54117 -28.58652 -26.43714 -25.57300 -23.67918 -22.44602 -21.87637 -20.65869 -20.36512 -19.06481 -18.10739 -17.42219 -17.15470 -16.32495 -16.03335 -15.95824 -15.29140 -15.12128 -14.93168 -14.85299 -14.66357 -14.35739 -14.26107 -14.23405 -13.56546 -13.36747 -13.04650 -12.88658 -12.23254 -12.14449 -11.65667 -11.16522 -11.12704 -11.10654 -10.80515 -10.70448 -10.32116 -10.21441 -10.02411 -9.84652 -9.71051 -9.38664 -9.17298 -9.01864 -8.60743 -8.03258 -6.71569 -6.29048 -4.02853 -0.62860 0.56696 0.94133 1.13240 1.52134 1.66310 2.31031 2.78779 2.97710 3.19132 3.21794 3.28524 3.44730 3.49269 3.64473 4.07373 4.25266 4.36312 4.54236 4.70602 4.81490 4.88697 5.00451 5.07311 5.13053 5.24741 5.38155 5.47267 5.72360 5.86321 5.96827 6.10030 6.24857 6.56589 6.64007 6.74658 6.90023 6.91914 7.17608 7.37022 7.57653 8.15750 8.32800 9.16962 10.77700 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.018726 B = 0.002012 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.908612 B =13914.913621 C =14683.660860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.072 3.928 3 Si 0.921 3.079 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.519 4.519 8 H 0.076 0.924 9 S -0.034 6.034 10 C -0.108 4.108 11 C -0.053 4.053 12 C -0.141 4.141 13 C -0.088 4.088 14 C -0.156 4.156 15 C 0.568 3.432 16 O -0.533 6.533 17 N -0.726 5.726 18 C 0.074 3.926 19 C 0.428 3.572 20 O -0.440 6.440 21 C -0.339 4.339 22 C 0.139 3.861 23 N -0.483 5.483 24 C 0.036 3.964 25 S 0.213 5.787 26 C -0.017 4.017 27 H 0.269 0.731 28 H 0.132 0.868 29 H 0.125 0.875 30 H 0.119 0.881 31 H 0.410 0.590 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.191 0.809 35 H 0.208 0.792 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.005 -18.101 12.012 27.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.136 4.136 3 Si 0.747 3.253 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.666 4.666 8 H 0.094 0.906 9 S 0.200 5.800 10 C -0.219 4.219 11 C -0.074 4.074 12 C -0.161 4.161 13 C -0.107 4.107 14 C -0.160 4.160 15 C 0.357 3.643 16 O -0.410 6.410 17 N -0.383 5.383 18 C -0.051 4.051 19 C 0.305 3.695 20 O -0.316 6.316 21 C -0.461 4.461 22 C -0.021 4.021 23 N -0.196 5.196 24 C -0.257 4.257 25 S 0.469 5.531 26 C -0.039 4.039 27 H 0.079 0.921 28 H 0.150 0.850 29 H 0.143 0.857 30 H 0.137 0.863 31 H 0.248 0.752 32 H 0.124 0.876 33 H 0.124 0.876 34 H 0.208 0.792 35 H 0.225 0.775 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 15.202 -17.675 12.798 26.595 hybrid contribution 2.538 0.588 -0.791 2.722 sum 17.740 -17.087 12.007 27.402 Atomic orbital electron populations 1.69997 1.05892 1.27562 1.47074 1.25011 0.95138 0.99135 0.94366 0.86063 0.79728 0.81541 0.77950 1.19507 1.20486 1.20432 1.22885 0.94922 0.90164 1.58664 0.90552 1.83613 1.04247 0.97130 1.95006 1.22856 1.03027 1.02171 0.93828 1.21981 0.93229 0.93295 0.98887 1.21075 0.98153 0.99867 0.96963 1.21194 0.98626 0.98540 0.92327 1.19758 1.00947 1.03592 0.91746 1.18415 0.78652 0.77728 0.89490 1.90777 1.59129 1.52615 1.38445 1.45646 1.36213 1.47956 1.08513 1.21585 0.96169 0.99406 0.87960 1.19952 0.82676 0.79928 0.86949 1.90620 1.61901 1.52053 1.27050 1.25360 1.08955 1.12394 0.99435 1.22860 0.90861 0.92430 0.95998 1.66209 1.29459 1.25212 0.98722 1.29070 0.96195 0.96611 1.03798 1.84274 1.31361 1.40274 0.97185 1.21944 0.91834 0.91852 0.98238 0.92110 0.85004 0.85750 0.86329 0.75162 0.87600 0.87624 0.79192 0.77515 0.84228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.39 13.22 55.49 0.73 -24.65 16 2 C 0.07 2.03 5.49 -17.46 -0.10 1.93 16 3 Si 0.92 21.44 29.55 -169.99 -5.02 16.42 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 7 C -0.52 -14.62 9.46 30.92 0.29 -14.33 16 8 H 0.08 2.14 7.79 -52.49 -0.41 1.73 16 9 S -0.03 -0.89 21.41 -107.50 -2.30 -3.19 16 10 C -0.11 -2.31 5.45 -38.99 -0.21 -2.52 16 11 C -0.05 -0.95 9.79 -39.25 -0.38 -1.33 16 12 C -0.14 -2.06 10.02 -39.67 -0.40 -2.45 16 13 C -0.09 -1.25 9.54 -39.12 -0.37 -1.62 16 14 C -0.16 -2.63 5.87 -105.00 -0.62 -3.25 16 15 C 0.57 9.05 7.77 -12.32 -0.10 8.95 16 16 O -0.53 -10.05 16.34 5.32 0.09 -9.96 16 17 N -0.73 -8.77 5.48 -62.43 -0.34 -9.11 16 18 C 0.07 0.70 5.51 -5.19 -0.03 0.68 16 19 C 0.43 3.77 7.01 -33.11 -0.23 3.54 16 20 O -0.44 -4.80 16.09 5.43 0.09 -4.71 16 21 C -0.34 -2.46 6.29 -38.76 -0.24 -2.70 16 22 C 0.14 1.02 11.10 -18.38 -0.20 0.82 16 23 N -0.48 -3.51 10.49 -15.04 -0.16 -3.67 16 24 C 0.04 0.16 12.21 51.77 0.63 0.79 16 25 S 0.21 1.01 22.61 -107.50 -2.43 -1.42 16 26 C -0.02 -0.34 9.34 -38.92 -0.36 -0.71 16 27 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 28 H 0.13 2.24 8.06 -52.49 -0.42 1.82 16 29 H 0.12 1.40 8.06 -52.48 -0.42 0.98 16 30 H 0.12 1.28 6.40 -52.49 -0.34 0.95 16 31 H 0.41 4.45 5.46 -40.82 -0.22 4.22 16 32 H 0.11 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.19 1.20 8.04 -52.49 -0.42 0.78 16 35 H 0.21 0.18 8.06 -52.49 -0.42 -0.24 16 36 H 0.14 3.03 7.65 -52.49 -0.40 2.63 16 LS Contribution 355.48 15.07 5.36 5.36 Total: -1.00 -34.69 355.48 -9.35 -44.05 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -3.04 Total: 3.10 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: -2.32 Total: -12.21 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: 0.23 Total: -37.43 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: 0.17 Total: -14.68 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: 0.12 SS G_CDS: -4.73 Total: -4.61 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.69 -9.35 -44.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364366579.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.118 kcal (2) G-P(sol) polarization free energy of solvation -34.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds