Wall clock time and date at job start Wed Apr 1 2020 05:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86794 * 120.00017 * 2 1 4 4 H 1.48508 * 109.47133 * 269.99301 * 3 2 1 5 5 H 1.48495 * 109.47529 * 29.99406 * 3 2 1 6 6 H 1.48506 * 109.47108 * 149.99856 * 3 2 1 7 7 C 1.37879 * 119.99627 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99510 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00442 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.47236 * 300.00182 * 9 7 2 11 11 O 1.42904 * 109.46789 * 59.99859 * 9 7 2 12 12 C 1.53000 * 109.47436 * 179.97438 * 9 7 2 13 13 S 1.81000 * 109.47148 * 180.02562 * 12 9 7 14 14 C 1.76199 * 99.99871 * 180.02562 * 13 12 9 15 15 N 1.31149 * 126.38193 * 359.69008 * 14 13 12 16 16 N 1.28652 * 109.30900 * 179.82661 * 15 14 13 17 17 C 1.30068 * 109.56620 * 0.44267 * 16 15 14 18 18 C 1.50703 * 126.21089 * 179.70780 * 17 16 15 19 19 C 1.52999 * 109.47019 * 90.02262 * 18 17 16 20 20 H 1.09006 * 109.64552 * 305.43472 * 19 18 17 21 21 C 1.53877 * 109.64843 * 184.99980 * 19 18 17 22 22 C 1.55041 * 106.62561 * 192.96731 * 21 19 18 23 23 S 1.83289 * 102.56479 * 42.43640 * 22 21 19 24 24 O 1.42106 * 109.35335 * 90.18859 * 23 22 21 25 25 O 1.42107 * 109.35149 * 223.25107 * 23 22 21 26 26 C 1.54165 * 109.64316 * 65.72763 * 19 18 17 27 27 O 1.34641 * 126.38100 * 180.02562 * 14 13 12 28 28 H 0.96996 * 120.00149 * 0.02562 * 1 2 3 29 29 H 0.96699 * 114.00435 * 60.00530 * 11 9 7 30 30 H 1.09000 * 109.46890 * 60.00024 * 12 9 7 31 31 H 1.09005 * 109.47103 * 300.00131 * 12 9 7 32 32 H 1.08996 * 109.47333 * 210.02821 * 18 17 16 33 33 H 1.09003 * 109.46827 * 330.02922 * 18 17 16 34 34 H 1.09001 * 110.02542 * 312.26531 * 21 19 18 35 35 H 1.09005 * 110.02329 * 73.67876 * 21 19 18 36 36 H 1.09004 * 110.78839 * 160.70343 * 22 21 19 37 37 H 1.09000 * 110.79345 * 284.16881 * 22 21 19 38 38 H 1.09001 * 110.32291 * 266.65927 * 26 19 18 39 39 H 1.08996 * 110.32225 * 28.86137 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6239 -2.5567 0.8902 11 8 0.4298 -2.5751 -1.1666 12 6 2.2452 -3.6621 0.0005 13 16 1.3401 -5.2296 -0.0002 14 6 2.6898 -6.3622 0.0007 15 7 3.9645 -6.0535 -0.0041 16 7 4.6638 -7.1333 0.0021 17 6 3.8718 -8.1651 0.0015 18 6 4.2944 -9.6117 0.0012 19 6 4.4362 -10.1018 1.4436 20 1 5.1156 -9.4461 1.9883 21 6 4.9874 -11.5384 1.4501 22 6 4.7926 -12.0818 2.8890 23 16 3.1096 -11.4928 3.3133 24 8 2.1564 -12.4740 2.9287 25 8 3.1085 -10.9873 4.6414 26 6 3.0559 -10.0988 2.1301 27 8 2.6048 -7.7059 0.0000 28 1 -0.4850 0.8400 -0.0004 29 1 0.9222 -2.5300 -1.9976 30 1 2.8718 -3.6044 0.8905 31 1 2.8719 -3.6044 -0.8895 32 1 3.5425 -10.2098 -0.5135 33 1 5.2510 -9.7107 -0.5118 34 1 4.4342 -12.1537 0.7405 35 1 6.0468 -11.5329 1.1934 36 1 4.8357 -13.1709 2.9004 37 1 5.5334 -11.6571 3.5666 38 1 2.8983 -9.1591 2.6594 39 1 2.2670 -10.2569 1.3947 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001421354330.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:34 Heat of formation + Delta-G solvation = -85.939256 kcal Electronic energy + Delta-G solvation = -25262.314088 eV Core-core repulsion = 21232.719579 eV Total energy + Delta-G solvation = -4029.594509 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 2.21 seconds Orbital eigenvalues (eV) -44.06858 -38.15916 -37.44062 -36.41652 -36.22332 -36.02488 -32.97001 -32.30622 -30.57894 -29.88816 -28.37291 -25.62621 -25.16039 -23.99073 -22.61915 -21.30707 -21.18268 -19.30353 -18.33134 -17.58115 -17.51393 -17.31250 -16.88297 -16.36985 -16.07575 -15.43051 -15.05690 -14.76090 -14.69798 -14.52566 -14.37372 -14.10660 -14.00112 -13.27780 -12.79684 -12.71369 -12.67975 -12.57196 -12.43939 -12.42857 -12.18421 -11.91527 -11.82216 -11.63472 -11.42398 -11.28679 -11.15902 -10.99866 -10.96064 -10.79486 -10.39268 -10.22027 -10.09273 -9.36473 -8.75109 -8.49081 -7.61968 -6.17806 -4.38285 -0.44531 0.82120 1.00784 2.04256 2.30014 2.38770 2.70629 3.09306 3.20736 3.28288 3.31513 3.47301 3.69169 3.82964 3.92686 4.17799 4.22566 4.27879 4.29498 4.54604 4.71444 4.86531 4.96361 5.02349 5.05235 5.07972 5.09541 5.21525 5.31710 5.36861 5.56473 5.63586 5.79952 6.00364 6.48461 7.36464 7.65971 7.88915 8.20981 8.62687 9.12728 9.37872 10.86283 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.022448 B = 0.002036 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.005470 B =13747.109329 C =14015.048207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.082 3.918 3 Si 0.897 3.103 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.570 4.570 8 H 0.062 0.938 9 C 0.245 3.755 10 H 0.070 0.930 11 O -0.560 6.560 12 C -0.128 4.128 13 S 0.062 5.938 14 C 0.144 3.856 15 N -0.297 5.297 16 N -0.271 5.271 17 C 0.140 3.860 18 C -0.008 4.008 19 C -0.082 4.082 20 H 0.105 0.895 21 C -0.115 4.115 22 C -0.588 4.588 23 S 2.390 3.610 24 O -0.935 6.935 25 O -0.936 6.936 26 C -0.598 4.598 27 O -0.210 6.210 28 H 0.264 0.736 29 H 0.351 0.649 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.104 0.896 33 H 0.119 0.881 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.140 0.860 37 H 0.140 0.860 38 H 0.140 0.860 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.753 -25.127 1.299 26.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.126 4.126 3 Si 0.724 3.276 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.609 4.609 8 H 0.081 0.919 9 C 0.185 3.815 10 H 0.088 0.912 11 O -0.363 6.363 12 C -0.276 4.276 13 S 0.294 5.706 14 C -0.172 4.172 15 N -0.149 5.149 16 N -0.118 5.118 17 C -0.076 4.076 18 C -0.047 4.047 19 C -0.102 4.102 20 H 0.123 0.877 21 C -0.153 4.153 22 C -0.718 4.718 23 S 2.573 3.427 24 O -0.932 6.932 25 O -0.933 6.933 26 C -0.727 4.727 27 O -0.092 6.092 28 H 0.074 0.926 29 H 0.195 0.805 30 H 0.115 0.885 31 H 0.110 0.890 32 H 0.122 0.878 33 H 0.137 0.863 34 H 0.112 0.888 35 H 0.124 0.876 36 H 0.158 0.842 37 H 0.158 0.842 38 H 0.158 0.842 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 8.303 -24.890 2.433 26.351 hybrid contribution 1.824 0.887 -0.913 2.224 sum 10.127 -24.004 1.519 26.097 Atomic orbital electron populations 1.70065 1.05989 1.26988 1.45962 1.25036 0.94809 0.99327 0.93440 0.86529 0.79906 0.82766 0.78380 1.20345 1.20952 1.19630 1.21440 0.93389 0.90060 1.56053 0.91938 1.19294 0.87471 0.87585 0.87151 0.91229 1.86599 1.38246 1.95981 1.15434 1.25208 1.03843 0.91802 1.06780 1.86565 0.99181 0.95739 1.89076 1.30772 1.01333 0.83653 1.01406 1.74993 0.99189 1.20095 1.20610 1.74059 1.27862 0.94333 1.15565 1.27648 0.77589 0.99423 1.02951 1.20119 1.04202 0.83336 0.97056 1.21664 0.94195 0.98076 0.96306 0.87671 1.22258 1.05302 0.93728 0.94036 1.30630 1.23342 1.11818 1.05974 1.09111 0.78807 0.78034 0.76784 1.93634 1.57752 1.57516 1.84261 1.93637 1.86552 1.79950 1.33180 1.30740 1.04971 1.20087 1.16921 1.84974 1.32317 1.21022 1.70874 0.92606 0.80459 0.88503 0.89049 0.87800 0.86284 0.88766 0.87636 0.84152 0.84217 0.84205 0.83817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.04 12.84 55.43 0.71 -23.33 16 2 C 0.08 2.16 5.40 -17.82 -0.10 2.07 16 3 Si 0.90 20.33 29.54 -169.99 -5.02 15.31 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.57 -14.68 8.76 -34.44 -0.30 -14.98 16 8 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 9 C 0.25 5.75 2.87 -27.89 -0.08 5.67 16 10 H 0.07 1.78 8.14 -51.93 -0.42 1.36 16 11 O -0.56 -13.25 12.32 -35.23 -0.43 -13.69 16 12 C -0.13 -2.47 4.86 37.16 0.18 -2.29 16 13 S 0.06 1.07 21.95 -107.50 -2.36 -1.29 16 14 C 0.14 2.39 8.53 52.47 0.45 2.83 16 15 N -0.30 -5.24 11.63 30.29 0.35 -4.89 16 16 N -0.27 -4.15 12.20 32.59 0.40 -3.75 16 17 C 0.14 1.66 7.21 -13.03 -0.09 1.57 16 18 C -0.01 -0.04 5.22 -27.88 -0.15 -0.19 16 19 C -0.08 -0.37 2.59 -89.55 -0.23 -0.61 16 20 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 21 C -0.11 -0.23 5.80 -25.20 -0.15 -0.37 16 22 C -0.59 -1.60 7.31 38.24 0.28 -1.32 16 23 S 2.39 15.68 6.10 -107.50 -0.66 15.02 16 24 O -0.93 -9.34 18.15 -57.73 -1.05 -10.39 16 25 O -0.94 -10.25 18.15 -57.73 -1.05 -11.30 16 26 C -0.60 -3.54 6.23 37.77 0.24 -3.30 16 27 O -0.21 -2.97 10.90 3.50 0.04 -2.93 16 28 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.35 7.32 9.04 45.56 0.41 7.73 16 30 H 0.10 1.87 8.14 -51.92 -0.42 1.45 16 31 H 0.09 1.74 8.14 -51.91 -0.42 1.32 16 32 H 0.10 0.38 8.03 -51.93 -0.42 -0.03 16 33 H 0.12 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.09 0.06 8.11 -51.93 -0.42 -0.36 16 35 H 0.11 0.06 8.14 -51.93 -0.42 -0.36 16 36 H 0.14 0.19 8.14 -51.93 -0.42 -0.23 16 37 H 0.14 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.14 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.14 0.75 7.81 -51.93 -0.41 0.34 16 LS Contribution 362.19 15.07 5.46 5.46 Total: -1.00 -36.92 362.19 -7.74 -44.66 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -4.18 Total: 2.05 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: 0.05 Total: -10.92 kcal Atomic # 7 Polarization: -33.44 SS G_CDS: 1.46 Total: -31.97 kcal Atomic # 8 Polarization: -35.81 SS G_CDS: -2.49 Total: -38.30 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Atomic # 16 Polarization: 16.74 SS G_CDS: -3.02 Total: 13.73 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.92 -7.74 -44.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001421354330.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.283 kcal (2) G-P(sol) polarization free energy of solvation -36.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.21 seconds