Wall clock time and date at job start Wed Apr 1 2020 05:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86794 * 120.00017 * 2 1 4 4 H 1.48508 * 109.47133 * 269.99301 * 3 2 1 5 5 H 1.48495 * 109.47529 * 29.99406 * 3 2 1 6 6 H 1.48506 * 109.47108 * 149.99856 * 3 2 1 7 7 C 1.37879 * 119.99627 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99510 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00442 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.47236 * 300.00182 * 9 7 2 11 11 O 1.42904 * 109.46789 * 59.99859 * 9 7 2 12 12 C 1.53000 * 109.47436 * 179.97438 * 9 7 2 13 13 S 1.81000 * 109.47148 * 180.02562 * 12 9 7 14 14 C 1.76199 * 99.99871 * 180.02562 * 13 12 9 15 15 N 1.31149 * 126.38193 * 359.69008 * 14 13 12 16 16 N 1.28652 * 109.30900 * 179.82661 * 15 14 13 17 17 C 1.30068 * 109.56620 * 0.44267 * 16 15 14 18 18 C 1.50703 * 126.21089 * 179.70780 * 17 16 15 19 19 C 1.52999 * 109.47019 * 90.02262 * 18 17 16 20 20 H 1.09006 * 109.64552 * 305.43472 * 19 18 17 21 21 C 1.53877 * 109.64843 * 184.99980 * 19 18 17 22 22 C 1.55041 * 106.62561 * 192.96731 * 21 19 18 23 23 S 1.83289 * 102.56479 * 42.43640 * 22 21 19 24 24 O 1.42106 * 109.35335 * 90.18859 * 23 22 21 25 25 O 1.42107 * 109.35149 * 223.25107 * 23 22 21 26 26 C 1.54165 * 109.64316 * 65.72763 * 19 18 17 27 27 O 1.34641 * 126.38100 * 180.02562 * 14 13 12 28 28 H 0.96996 * 120.00149 * 0.02562 * 1 2 3 29 29 H 0.96699 * 114.00435 * 60.00530 * 11 9 7 30 30 H 1.09000 * 109.46890 * 60.00024 * 12 9 7 31 31 H 1.09005 * 109.47103 * 300.00131 * 12 9 7 32 32 H 1.08996 * 109.47333 * 210.02821 * 18 17 16 33 33 H 1.09003 * 109.46827 * 330.02922 * 18 17 16 34 34 H 1.09001 * 110.02542 * 312.26531 * 21 19 18 35 35 H 1.09005 * 110.02329 * 73.67876 * 21 19 18 36 36 H 1.09004 * 110.78839 * 160.70343 * 22 21 19 37 37 H 1.09000 * 110.79345 * 284.16881 * 22 21 19 38 38 H 1.09001 * 110.32291 * 266.65927 * 26 19 18 39 39 H 1.08996 * 110.32225 * 28.86137 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6239 -2.5567 0.8902 11 8 0.4298 -2.5751 -1.1666 12 6 2.2452 -3.6621 0.0005 13 16 1.3401 -5.2296 -0.0002 14 6 2.6898 -6.3622 0.0007 15 7 3.9645 -6.0535 -0.0041 16 7 4.6638 -7.1333 0.0021 17 6 3.8718 -8.1651 0.0015 18 6 4.2944 -9.6117 0.0012 19 6 4.4362 -10.1018 1.4436 20 1 5.1156 -9.4461 1.9883 21 6 4.9874 -11.5384 1.4501 22 6 4.7926 -12.0818 2.8890 23 16 3.1096 -11.4928 3.3133 24 8 2.1564 -12.4740 2.9287 25 8 3.1085 -10.9873 4.6414 26 6 3.0559 -10.0988 2.1301 27 8 2.6048 -7.7059 0.0000 28 1 -0.4850 0.8400 -0.0004 29 1 0.9222 -2.5300 -1.9976 30 1 2.8718 -3.6044 0.8905 31 1 2.8719 -3.6044 -0.8895 32 1 3.5425 -10.2098 -0.5135 33 1 5.2510 -9.7107 -0.5118 34 1 4.4342 -12.1537 0.7405 35 1 6.0468 -11.5329 1.1934 36 1 4.8357 -13.1709 2.9004 37 1 5.5334 -11.6571 3.5666 38 1 2.8983 -9.1591 2.6594 39 1 2.2670 -10.2569 1.3947 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001421354330.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:33 Heat of formation + Delta-G solvation = -120.045720 kcal Electronic energy + Delta-G solvation = -25263.793055 eV Core-core repulsion = 21232.719579 eV Total energy + Delta-G solvation = -4031.073476 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -45.21563 -38.55485 -38.07781 -37.99843 -37.29262 -37.05737 -34.32130 -33.68539 -31.80563 -31.06838 -29.05905 -27.43876 -25.79126 -25.17628 -23.53845 -22.93865 -21.67783 -19.86901 -19.60979 -19.22857 -18.59817 -18.03663 -17.54930 -17.30313 -16.72633 -16.64879 -16.40327 -16.23011 -16.07340 -15.67248 -15.42614 -14.99348 -14.60065 -14.42332 -13.71907 -13.68187 -13.51739 -13.34045 -13.26033 -13.18588 -13.14968 -13.05292 -12.98442 -12.85849 -12.78910 -12.56284 -12.38898 -12.08161 -11.95017 -11.74054 -11.66920 -11.35879 -11.19995 -11.15489 -10.75912 -10.39465 -8.96265 -8.19523 -6.46040 -0.92081 -0.48112 -0.10664 0.94170 1.15717 1.42076 1.43623 1.53920 1.61249 1.69561 2.38291 2.65457 2.98836 3.07660 3.09868 3.35073 3.53907 3.68700 3.76052 3.84814 3.91410 3.99731 4.06572 4.10981 4.19239 4.20984 4.34727 4.56128 4.64622 4.71025 4.83202 4.84236 4.86461 5.10603 5.15997 5.44815 5.62773 5.92264 6.62711 7.05233 7.25994 7.42029 8.85003 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.022448 B = 0.002036 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.005470 B =13747.109329 C =14015.048207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.031 3.969 3 Si 0.963 3.037 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.582 4.582 8 H 0.064 0.936 9 C 0.247 3.753 10 H 0.041 0.959 11 O -0.571 6.571 12 C -0.115 4.115 13 S 0.076 5.924 14 C 0.129 3.871 15 N -0.319 5.319 16 N -0.306 5.306 17 C 0.170 3.830 18 C -0.013 4.013 19 C -0.081 4.081 20 H 0.104 0.896 21 C -0.110 4.110 22 C -0.554 4.554 23 S 2.380 3.620 24 O -0.977 6.977 25 O -0.993 6.993 26 C -0.599 4.599 27 O -0.211 6.211 28 H 0.265 0.735 29 H 0.363 0.637 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.133 0.867 33 H 0.151 0.849 34 H 0.116 0.884 35 H 0.136 0.864 36 H 0.165 0.835 37 H 0.156 0.844 38 H 0.122 0.878 39 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.358 -27.293 0.102 29.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.173 4.173 3 Si 0.787 3.213 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.190 1.190 7 C -0.621 4.621 8 H 0.083 0.917 9 C 0.187 3.813 10 H 0.059 0.941 11 O -0.376 6.376 12 C -0.264 4.264 13 S 0.307 5.693 14 C -0.189 4.189 15 N -0.171 5.171 16 N -0.151 5.151 17 C -0.046 4.046 18 C -0.052 4.052 19 C -0.101 4.101 20 H 0.122 0.878 21 C -0.149 4.149 22 C -0.688 4.688 23 S 2.570 3.430 24 O -0.974 6.974 25 O -0.991 6.991 26 C -0.729 4.729 27 O -0.093 6.093 28 H 0.074 0.926 29 H 0.208 0.792 30 H 0.111 0.889 31 H 0.112 0.888 32 H 0.151 0.849 33 H 0.169 0.831 34 H 0.135 0.865 35 H 0.154 0.846 36 H 0.183 0.817 37 H 0.174 0.826 38 H 0.141 0.859 39 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 10.900 -27.061 1.253 29.201 hybrid contribution 1.117 1.348 -0.574 1.842 sum 12.017 -25.713 0.679 28.391 Atomic orbital electron populations 1.70185 1.07543 1.27784 1.47541 1.25854 0.95523 1.02796 0.93092 0.85506 0.78644 0.78597 0.78537 1.19685 1.20830 1.19046 1.21815 0.93686 0.91393 1.55234 0.91742 1.19007 0.87353 0.88782 0.86139 0.94141 1.86538 1.38882 1.96108 1.16065 1.24695 1.02627 0.92385 1.06694 1.86352 0.98556 0.94494 1.89926 1.30433 1.00785 0.84565 1.03073 1.74926 0.99711 1.21780 1.20698 1.74013 1.28292 0.94607 1.18232 1.28992 0.76228 1.01161 0.98228 1.20715 1.06583 0.79494 0.98425 1.21749 0.93054 1.00202 0.95142 0.87797 1.22400 1.07312 0.91577 0.93567 1.30444 1.18198 1.13261 1.06886 1.09112 0.80650 0.77553 0.75720 1.93572 1.60929 1.58478 1.84435 1.93559 1.88042 1.80887 1.36570 1.30693 1.06669 1.18700 1.16850 1.84996 1.33610 1.19869 1.70817 0.92640 0.79165 0.88876 0.88818 0.84870 0.83123 0.86526 0.84561 0.81740 0.82601 0.85918 0.83140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.23 12.84 21.45 0.28 -50.96 16 2 C 0.03 1.67 5.40 84.66 0.46 2.12 16 3 Si 0.96 41.91 29.54 68.60 2.03 43.94 16 4 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 5 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 6 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 7 C -0.58 -30.39 8.76 25.60 0.22 -30.16 16 8 H 0.06 3.27 7.74 -2.91 -0.02 3.24 16 9 C 0.25 11.90 2.87 29.85 0.09 11.98 16 10 H 0.04 2.17 8.14 -2.39 -0.02 2.15 16 11 O -0.57 -27.59 12.32 -148.98 -1.84 -29.43 16 12 C -0.12 -4.53 4.86 71.98 0.35 -4.18 16 13 S 0.08 2.61 21.95 -56.49 -1.24 1.37 16 14 C 0.13 4.23 8.53 130.34 1.11 5.34 16 15 N -0.32 -11.15 11.63 -172.07 -2.00 -13.15 16 16 N -0.31 -8.93 12.20 -165.24 -2.02 -10.94 16 17 C 0.17 3.63 7.21 88.37 0.64 4.27 16 18 C -0.01 -0.10 5.22 29.85 0.16 0.06 16 19 C -0.08 -0.45 2.59 -10.10 -0.03 -0.47 16 20 H 0.10 0.66 8.14 -2.38 -0.02 0.64 16 21 C -0.11 0.16 5.80 31.59 0.18 0.34 16 22 C -0.55 -0.82 7.31 72.68 0.53 -0.29 16 23 S 2.38 29.94 6.10 -56.49 -0.34 29.60 16 24 O -0.98 -19.47 18.15 -127.47 -2.31 -21.79 16 25 O -0.99 -22.85 18.15 -127.47 -2.31 -25.16 16 26 C -0.60 -6.34 6.23 72.38 0.45 -5.89 16 27 O -0.21 -5.69 10.90 -10.39 -0.11 -5.80 16 28 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 29 H 0.36 15.31 9.04 -74.06 -0.67 14.64 16 30 H 0.09 3.68 8.14 -2.39 -0.02 3.67 16 31 H 0.09 3.61 8.14 -2.39 -0.02 3.59 16 32 H 0.13 0.29 8.03 -2.39 -0.02 0.27 16 33 H 0.15 0.28 8.14 -2.39 -0.02 0.26 16 34 H 0.12 -0.56 8.11 -2.39 -0.02 -0.58 16 35 H 0.14 -0.79 8.14 -2.38 -0.02 -0.81 16 36 H 0.16 -0.34 8.14 -2.39 -0.02 -0.36 16 37 H 0.16 -0.10 8.14 -2.39 -0.02 -0.12 16 38 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.15 1.35 7.81 -2.39 -0.02 1.33 16 Total: -1.00 -83.45 362.19 -5.29 -88.73 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: 0.43 Total: 10.49 kcal Atomic # 6 Polarization: -21.05 SS G_CDS: 4.16 Total: -16.89 kcal Atomic # 7 Polarization: -71.31 SS G_CDS: -3.74 Total: -75.06 kcal Atomic # 8 Polarization: -75.60 SS G_CDS: -6.58 Total: -82.18 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Atomic # 16 Polarization: 32.55 SS G_CDS: -1.58 Total: 30.96 kcal Total: -83.45 -5.29 -88.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001421354330.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.311 kcal (2) G-P(sol) polarization free energy of solvation -83.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds