Wall clock time and date at job start Wed Apr 1 2020 06:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81394 * 107.17161 * 2 1 4 4 O 1.42104 * 113.53808 * 233.80241 * 2 1 3 5 5 N 1.49355 * 107.52342 * 115.34414 * 2 1 3 6 6 S 1.65600 * 120.00066 * 179.97438 * 5 2 1 7 7 O 1.42103 * 106.40063 * 66.45601 * 6 5 2 8 8 O 1.42104 * 106.40097 * 293.53856 * 6 5 2 9 9 N 1.65594 * 107.21794 * 179.97438 * 6 5 2 10 10 C 1.46506 * 119.99712 * 65.00336 * 9 6 5 11 11 C 1.50699 * 109.46983 * 165.00095 * 10 9 6 12 12 C 1.38328 * 119.96224 * 270.02054 * 11 10 9 13 13 C 1.38280 * 120.13484 * 180.02562 * 12 11 10 14 14 C 1.38120 * 120.07150 * 359.67534 * 13 12 11 15 15 C 1.38861 * 119.92830 * 0.59673 * 14 13 12 16 16 O 1.35751 * 120.06597 * 179.69892 * 15 14 13 17 17 C 1.34829 * 117.00376 * 354.17384 * 16 15 14 18 18 H 1.07998 * 119.99999 * 5.03596 * 17 16 15 19 19 C 1.38657 * 120.00083 * 185.03464 * 17 16 15 20 20 N 1.31555 * 119.99797 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99748 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.47410 * 90.00109 * 21 19 17 23 23 H 1.48504 * 109.46801 * 209.99865 * 21 19 17 24 24 H 1.48497 * 109.47495 * 329.99577 * 21 19 17 25 25 C 1.38073 * 119.96952 * 89.99494 * 11 10 9 26 26 H 1.09006 * 109.46734 * 304.65843 * 1 2 3 27 27 H 1.09003 * 109.47107 * 64.65406 * 1 2 3 28 28 H 1.09000 * 109.47883 * 184.65981 * 1 2 3 29 29 H 1.08999 * 109.47480 * 173.80615 * 3 2 1 30 30 H 1.08997 * 109.47287 * 293.80825 * 3 2 1 31 31 H 1.09000 * 109.46816 * 53.80319 * 3 2 1 32 32 H 0.97001 * 120.00325 * 244.99765 * 9 6 5 33 33 H 1.08996 * 109.47397 * 44.99663 * 10 9 6 34 34 H 1.08997 * 109.47015 * 284.99506 * 10 9 6 35 35 H 1.08001 * 119.93314 * 359.97438 * 12 11 10 36 36 H 1.08007 * 119.96121 * 179.97438 * 13 12 11 37 37 H 1.08001 * 120.03709 * 180.32387 * 14 13 12 38 38 H 0.96998 * 119.99749 * 179.97438 * 20 19 17 39 39 H 1.08001 * 120.03594 * 0.04940 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.3495 1.7331 0.0000 4 8 2.3815 -0.7694 -1.0513 5 7 2.2637 -0.6097 1.2872 6 16 3.8806 -0.7634 1.6102 7 8 4.3905 0.5564 1.7428 8 8 4.3894 -1.7028 0.6732 9 7 4.0174 -1.4690 3.1020 10 6 3.5430 -2.8394 3.3104 11 6 4.0999 -3.3722 4.6054 12 6 5.3132 -4.0366 4.6142 13 6 5.8273 -4.5275 5.8003 14 6 5.1336 -4.3498 6.9814 15 6 3.9127 -3.6883 6.9750 16 8 3.2256 -3.5174 8.1332 17 6 3.7223 -4.1172 9.2338 18 1 4.6699 -4.6332 9.1865 19 6 3.0166 -4.0716 10.4265 20 7 3.5011 -4.6573 11.5003 21 14 1.3774 -3.1797 10.5082 22 1 0.2813 -4.1276 10.1837 23 1 1.1756 -2.6393 11.8766 24 1 1.3720 -2.0630 9.5294 25 6 3.3990 -3.1964 5.7819 26 1 -0.3633 0.5845 0.8454 27 1 -0.3633 0.4399 -0.9288 28 1 -0.3635 -1.0242 0.0835 29 1 3.4329 1.7787 0.1109 30 1 2.0605 2.2027 -0.9402 31 1 1.8769 2.2594 0.8293 32 1 4.4117 -0.9751 3.8379 33 1 3.8763 -3.4687 2.4853 34 1 2.4540 -2.8441 3.3541 35 1 5.8596 -4.1730 3.6927 36 1 6.7746 -5.0462 5.8039 37 1 5.5381 -4.7289 7.9083 38 1 3.0076 -4.6250 12.3347 39 1 2.4516 -2.6779 5.7744 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434551899.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:58:10 Heat of formation + Delta-G solvation = -60.142056 kcal Electronic energy + Delta-G solvation = -25761.084569 eV Core-core repulsion = 21732.608710 eV Total energy + Delta-G solvation = -4028.475859 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 2.55 seconds Orbital eigenvalues (eV) -39.25577 -37.28642 -37.12949 -36.88569 -35.84151 -34.69187 -33.48093 -32.38745 -30.59121 -30.42532 -29.79861 -29.23208 -25.61855 -24.86151 -21.75051 -20.90125 -20.64525 -18.85479 -18.08312 -17.78544 -17.52208 -17.11994 -16.61170 -16.18188 -15.73523 -15.23449 -14.89946 -14.79957 -14.41414 -14.15470 -14.02920 -14.00799 -13.81494 -13.70137 -13.49274 -13.12719 -12.92024 -12.69532 -12.30813 -12.16791 -12.02933 -11.98060 -11.90687 -11.85896 -11.71098 -11.30640 -10.83702 -10.78007 -10.71971 -10.65603 -10.54201 -10.16654 -9.44305 -9.32578 -8.88218 -8.24069 -7.39739 -6.41671 -4.08670 -1.26331 0.71763 1.90066 2.02793 2.24999 2.48755 3.11409 3.21582 3.24881 3.26097 3.39771 3.96657 4.08536 4.17008 4.23353 4.24592 4.47181 4.60022 4.69953 4.84236 4.92573 5.08409 5.12585 5.17859 5.49163 5.65977 5.75161 5.87376 6.05795 6.12386 6.24850 6.52015 6.77102 7.06685 7.16703 7.22247 7.29244 7.58002 7.79607 8.03245 8.93585 9.55727 10.66072 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.017288 B = 0.002538 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.276658 B =11030.297170 C =12063.343659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.533 4.533 2 S 2.322 3.678 3 C -0.638 4.638 4 O -0.919 6.919 5 N -1.521 6.521 6 S 2.788 3.212 7 O -1.008 7.008 8 O -0.977 6.977 9 N -1.092 6.092 10 C 0.171 3.829 11 C -0.066 4.066 12 C -0.185 4.185 13 C -0.078 4.078 14 C -0.214 4.214 15 C 0.156 3.844 16 O -0.218 6.218 17 C -0.390 4.390 18 H 0.106 0.894 19 C 0.063 3.937 20 N -0.880 5.880 21 Si 0.906 3.094 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.260 1.260 25 C -0.172 4.172 26 H 0.147 0.853 27 H 0.136 0.864 28 H 0.151 0.849 29 H 0.150 0.850 30 H 0.134 0.866 31 H 0.144 0.856 32 H 0.419 0.581 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.133 0.867 38 H 0.279 0.721 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.087 13.119 -24.292 28.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.694 4.694 2 S 2.513 3.487 3 C -0.794 4.794 4 O -0.904 6.904 5 N -1.541 6.541 6 S 2.794 3.206 7 O -0.991 6.991 8 O -0.958 6.958 9 N -0.854 5.854 10 C 0.045 3.955 11 C -0.068 4.068 12 C -0.205 4.205 13 C -0.096 4.096 14 C -0.233 4.233 15 C 0.104 3.896 16 O -0.123 6.123 17 C -0.465 4.465 18 H 0.124 0.876 19 C -0.140 4.140 20 N -0.518 5.518 21 Si 0.732 3.268 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.184 1.184 25 C -0.192 4.192 26 H 0.165 0.835 27 H 0.155 0.845 28 H 0.169 0.831 29 H 0.168 0.832 30 H 0.152 0.848 31 H 0.163 0.837 32 H 0.254 0.746 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.151 0.849 38 H 0.089 0.911 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.608 12.608 -24.938 28.961 hybrid contribution -0.617 0.912 1.006 1.491 sum -8.225 13.519 -23.932 28.691 Atomic orbital electron populations 1.29068 1.14023 1.14100 1.12188 1.10582 0.83634 0.79737 0.74759 1.30477 1.15104 1.21680 1.12124 1.93716 1.73927 1.63537 1.59231 1.76511 1.52035 1.70591 1.54922 1.01369 0.71999 0.73389 0.73818 1.93604 1.79504 1.39199 1.86822 1.93676 1.77715 1.63546 1.60895 1.55094 1.76927 1.23724 1.29695 1.20087 0.98640 0.80789 0.95936 1.19254 0.95287 0.99197 0.93050 1.20624 0.97095 1.04927 0.97830 1.20812 0.98634 0.97998 0.92204 1.21356 0.96727 1.05980 0.99243 1.19060 0.90803 0.93358 0.86405 1.83568 1.48889 1.65350 1.14503 1.20764 1.07230 1.33322 0.85195 0.87637 1.24465 0.99216 0.96512 0.93824 1.69647 1.39377 1.42057 1.00739 0.86173 0.82415 0.80669 0.77579 1.19896 1.20842 1.18360 1.20083 1.01853 1.07415 0.89872 0.83497 0.84541 0.83089 0.83170 0.84789 0.83724 0.74602 0.90018 0.90663 0.87077 0.86986 0.84896 0.91062 0.86222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.53 -0.27 10.89 101.05 1.10 0.83 16 2 S 2.32 14.72 4.91 -98.05 -0.48 14.24 16 3 C -0.64 -2.34 10.26 101.05 1.04 -1.30 16 4 O -0.92 -10.64 17.12 -46.32 -0.79 -11.43 16 5 N -1.52 -16.08 10.88 60.35 0.66 -15.42 16 6 S 2.79 40.02 5.80 -98.05 -0.57 39.45 16 7 O -1.01 -14.79 15.85 -57.17 -0.91 -15.69 16 8 O -0.98 -17.41 16.73 -62.87 -1.05 -18.46 16 9 N -1.09 -15.51 6.05 -11.65 -0.07 -15.58 16 10 C 0.17 2.53 6.37 -5.19 -0.03 2.49 16 11 C -0.07 -1.14 5.27 -104.65 -0.55 -1.69 16 12 C -0.19 -3.19 9.70 -39.53 -0.38 -3.58 16 13 C -0.08 -1.43 10.04 -39.61 -0.40 -1.82 16 14 C -0.21 -4.58 9.17 -39.39 -0.36 -4.95 16 15 C 0.16 3.55 6.65 -39.11 -0.26 3.29 16 16 O -0.22 -5.69 8.59 0.05 0.00 -5.69 16 17 C -0.39 -10.91 9.95 30.89 0.31 -10.60 16 18 H 0.11 3.02 5.44 -52.49 -0.29 2.73 16 19 C 0.06 1.76 5.49 -17.52 -0.10 1.66 16 20 N -0.88 -25.36 13.96 55.48 0.77 -24.58 16 21 Si 0.91 21.50 28.62 -169.99 -4.86 16.63 16 22 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.26 -6.16 7.11 56.52 0.40 -5.75 16 25 C -0.17 -3.36 9.65 -39.40 -0.38 -3.74 16 26 H 0.15 -0.23 8.14 -51.92 -0.42 -0.65 16 27 H 0.14 -0.38 8.14 -51.92 -0.42 -0.80 16 28 H 0.15 0.12 8.14 -51.92 -0.42 -0.30 16 29 H 0.15 0.99 6.46 -51.92 -0.34 0.65 16 30 H 0.13 -0.02 8.14 -51.93 -0.42 -0.44 16 31 H 0.14 0.20 8.14 -51.92 -0.42 -0.22 16 32 H 0.42 5.62 8.64 -34.47 -0.30 5.32 16 33 H 0.08 1.18 7.69 -51.93 -0.40 0.78 16 34 H 0.08 1.00 8.08 -51.93 -0.42 0.58 16 35 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 36 H 0.11 1.74 8.06 -52.48 -0.42 1.32 16 37 H 0.13 2.99 5.64 -52.49 -0.30 2.69 16 38 H 0.28 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.12 2.17 8.06 -52.49 -0.42 1.75 16 LS Contribution 358.43 15.07 5.40 5.40 Total: -1.00 -40.08 358.43 -6.47 -46.55 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -4.55 Total: 3.98 kcal Atomic # 6 Polarization: -19.38 SS G_CDS: -0.02 Total: -19.40 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: 1.36 Total: -55.59 kcal Atomic # 8 Polarization: -48.52 SS G_CDS: -2.75 Total: -51.28 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.86 Total: 16.63 kcal Atomic # 16 Polarization: 54.74 SS G_CDS: -1.05 Total: 53.69 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -40.08 -6.47 -46.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434551899.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.589 kcal (2) G-P(sol) polarization free energy of solvation -40.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.55 seconds