Wall clock time and date at job start Wed Apr 1 2020 06:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81394 * 107.17161 * 2 1 4 4 O 1.42104 * 113.53808 * 233.80241 * 2 1 3 5 5 N 1.49355 * 107.52342 * 115.34414 * 2 1 3 6 6 S 1.65600 * 120.00066 * 179.97438 * 5 2 1 7 7 O 1.42103 * 106.40063 * 66.45601 * 6 5 2 8 8 O 1.42104 * 106.40097 * 293.53856 * 6 5 2 9 9 N 1.65594 * 107.21794 * 179.97438 * 6 5 2 10 10 C 1.46506 * 119.99712 * 65.00336 * 9 6 5 11 11 C 1.50699 * 109.46983 * 165.00095 * 10 9 6 12 12 C 1.38328 * 119.96224 * 270.02054 * 11 10 9 13 13 C 1.38280 * 120.13484 * 180.02562 * 12 11 10 14 14 C 1.38120 * 120.07150 * 359.67534 * 13 12 11 15 15 C 1.38861 * 119.92830 * 0.59673 * 14 13 12 16 16 O 1.35751 * 120.06597 * 179.69892 * 15 14 13 17 17 C 1.34829 * 117.00376 * 354.17384 * 16 15 14 18 18 H 1.07998 * 119.99999 * 5.03596 * 17 16 15 19 19 C 1.38657 * 120.00083 * 185.03464 * 17 16 15 20 20 N 1.31555 * 119.99797 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99748 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.47410 * 90.00109 * 21 19 17 23 23 H 1.48504 * 109.46801 * 209.99865 * 21 19 17 24 24 H 1.48497 * 109.47495 * 329.99577 * 21 19 17 25 25 C 1.38073 * 119.96952 * 89.99494 * 11 10 9 26 26 H 1.09006 * 109.46734 * 304.65843 * 1 2 3 27 27 H 1.09003 * 109.47107 * 64.65406 * 1 2 3 28 28 H 1.09000 * 109.47883 * 184.65981 * 1 2 3 29 29 H 1.08999 * 109.47480 * 173.80615 * 3 2 1 30 30 H 1.08997 * 109.47287 * 293.80825 * 3 2 1 31 31 H 1.09000 * 109.46816 * 53.80319 * 3 2 1 32 32 H 0.97001 * 120.00325 * 244.99765 * 9 6 5 33 33 H 1.08996 * 109.47397 * 44.99663 * 10 9 6 34 34 H 1.08997 * 109.47015 * 284.99506 * 10 9 6 35 35 H 1.08001 * 119.93314 * 359.97438 * 12 11 10 36 36 H 1.08007 * 119.96121 * 179.97438 * 13 12 11 37 37 H 1.08001 * 120.03709 * 180.32387 * 14 13 12 38 38 H 0.96998 * 119.99749 * 179.97438 * 20 19 17 39 39 H 1.08001 * 120.03594 * 0.04940 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.3495 1.7331 0.0000 4 8 2.3815 -0.7694 -1.0513 5 7 2.2637 -0.6097 1.2872 6 16 3.8806 -0.7634 1.6102 7 8 4.3905 0.5564 1.7428 8 8 4.3894 -1.7028 0.6732 9 7 4.0174 -1.4690 3.1020 10 6 3.5430 -2.8394 3.3104 11 6 4.0999 -3.3722 4.6054 12 6 5.3132 -4.0366 4.6142 13 6 5.8273 -4.5275 5.8003 14 6 5.1336 -4.3498 6.9814 15 6 3.9127 -3.6883 6.9750 16 8 3.2256 -3.5174 8.1332 17 6 3.7223 -4.1172 9.2338 18 1 4.6699 -4.6332 9.1865 19 6 3.0166 -4.0716 10.4265 20 7 3.5011 -4.6573 11.5003 21 14 1.3774 -3.1797 10.5082 22 1 0.2813 -4.1276 10.1837 23 1 1.1756 -2.6393 11.8766 24 1 1.3720 -2.0630 9.5294 25 6 3.3990 -3.1964 5.7819 26 1 -0.3633 0.5845 0.8454 27 1 -0.3633 0.4399 -0.9288 28 1 -0.3635 -1.0242 0.0835 29 1 3.4329 1.7787 0.1109 30 1 2.0605 2.2027 -0.9402 31 1 1.8769 2.2594 0.8293 32 1 4.4117 -0.9751 3.8379 33 1 3.8763 -3.4687 2.4853 34 1 2.4540 -2.8441 3.3541 35 1 5.8596 -4.1730 3.6927 36 1 6.7746 -5.0462 5.8039 37 1 5.5381 -4.7289 7.9083 38 1 3.0076 -4.6250 12.3347 39 1 2.4516 -2.6779 5.7744 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434551899.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:58:10 Heat of formation + Delta-G solvation = -94.620702 kcal Electronic energy + Delta-G solvation = -25762.579675 eV Core-core repulsion = 21732.608710 eV Total energy + Delta-G solvation = -4029.970965 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.94565 -38.77230 -38.27169 -37.65942 -36.97632 -35.99576 -34.43878 -34.18862 -31.89987 -30.87306 -30.74666 -30.01729 -27.37995 -26.45250 -23.31753 -22.34202 -21.68126 -19.75433 -19.69093 -19.19093 -18.66977 -18.23813 -17.46707 -16.88978 -16.83950 -16.55081 -16.49234 -15.96337 -15.75374 -15.64775 -15.08439 -14.95421 -14.56459 -14.36781 -14.23398 -14.03733 -14.00431 -13.85583 -13.70921 -13.60989 -13.31065 -13.14878 -13.14767 -12.99008 -12.58961 -12.48944 -12.46148 -12.34746 -12.21733 -11.91944 -11.45209 -11.31319 -11.17005 -10.90188 -10.47394 -9.78559 -9.11756 -8.48516 -6.21726 -1.60352 -0.26689 0.44533 0.65445 1.33564 1.37902 1.54435 1.61634 1.75667 2.11494 2.30073 2.77713 2.80114 3.00256 3.13616 3.50149 3.69953 3.78041 3.97020 4.06329 4.07925 4.14885 4.25755 4.28470 4.43978 4.45900 4.52731 4.69035 4.90339 4.91303 4.95449 4.97004 5.21611 5.38249 5.64147 5.70846 5.75582 5.89706 6.05270 6.20574 6.85618 7.58780 8.63078 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.017288 B = 0.002538 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.276658 B =11030.297170 C =12063.343659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.490 4.490 2 S 2.280 3.720 3 C -0.622 4.622 4 O -0.986 6.986 5 N -1.531 6.531 6 S 2.792 3.208 7 O -1.022 7.022 8 O -1.023 7.023 9 N -1.095 6.095 10 C 0.172 3.828 11 C -0.057 4.057 12 C -0.170 4.170 13 C -0.075 4.075 14 C -0.230 4.230 15 C 0.121 3.879 16 O -0.242 6.242 17 C -0.400 4.400 18 H 0.081 0.919 19 C 0.009 3.991 20 N -0.924 5.924 21 Si 0.972 3.028 22 H -0.265 1.265 23 H -0.269 1.269 24 H -0.261 1.261 25 C -0.166 4.166 26 H 0.180 0.820 27 H 0.183 0.817 28 H 0.154 0.846 29 H 0.119 0.881 30 H 0.178 0.822 31 H 0.174 0.826 32 H 0.421 0.579 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.111 0.889 38 H 0.285 0.715 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.987 15.343 -26.915 32.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.654 4.654 2 S 2.478 3.522 3 C -0.781 4.781 4 O -0.971 6.971 5 N -1.553 6.553 6 S 2.799 3.201 7 O -1.004 7.004 8 O -1.004 7.004 9 N -0.857 5.857 10 C 0.047 3.953 11 C -0.058 4.058 12 C -0.189 4.189 13 C -0.093 4.093 14 C -0.250 4.250 15 C 0.072 3.928 16 O -0.149 6.149 17 C -0.476 4.476 18 H 0.098 0.902 19 C -0.189 4.189 20 N -0.565 5.565 21 Si 0.794 3.206 22 H -0.190 1.190 23 H -0.194 1.194 24 H -0.185 1.185 25 C -0.186 4.186 26 H 0.198 0.802 27 H 0.200 0.800 28 H 0.172 0.828 29 H 0.137 0.863 30 H 0.196 0.804 31 H 0.192 0.808 32 H 0.256 0.744 33 H 0.105 0.895 34 H 0.112 0.888 35 H 0.158 0.842 36 H 0.159 0.841 37 H 0.129 0.871 38 H 0.094 0.906 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.446 14.807 -27.596 33.013 hybrid contribution 0.301 0.319 1.456 1.521 sum -10.145 15.126 -26.140 31.859 Atomic orbital electron populations 1.28993 1.04684 1.15562 1.16129 1.11865 0.87495 0.80598 0.72267 1.30302 1.13389 1.18483 1.15893 1.93662 1.77387 1.66148 1.59927 1.76265 1.49442 1.73736 1.55830 1.00963 0.73170 0.72772 0.73213 1.93580 1.80697 1.39337 1.86827 1.93616 1.79786 1.64863 1.62167 1.54985 1.77524 1.23557 1.29637 1.20121 0.99721 0.81129 0.94362 1.19538 0.94884 0.98044 0.93377 1.21073 0.96761 1.02608 0.98452 1.21108 0.99419 0.97595 0.91213 1.21387 0.97096 1.06707 0.99798 1.19564 0.91612 0.95075 0.86588 1.83511 1.49783 1.66815 1.14822 1.20709 1.06738 1.33633 0.86531 0.90173 1.25303 1.02872 0.97440 0.93303 1.69734 1.41199 1.44118 1.01468 0.85194 0.77970 0.79403 0.78014 1.18970 1.19353 1.18465 1.20312 1.02498 1.06584 0.89214 0.80187 0.79975 0.82814 0.86281 0.80448 0.80778 0.74354 0.89521 0.88836 0.84173 0.84066 0.87106 0.90581 0.84768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.49 2.22 10.89 113.37 1.23 3.46 16 2 S 2.28 23.97 4.91 -37.15 -0.18 23.79 16 3 C -0.62 -2.62 10.26 113.37 1.16 -1.45 16 4 O -0.99 -22.90 17.12 -138.38 -2.37 -25.27 16 5 N -1.53 -30.23 10.88 37.02 0.40 -29.83 16 6 S 2.79 79.55 5.80 -37.15 -0.22 79.34 16 7 O -1.02 -29.93 15.85 -128.00 -2.03 -31.96 16 8 O -1.02 -37.31 16.73 -122.55 -2.05 -39.36 16 9 N -1.09 -29.90 6.05 -190.79 -1.15 -31.05 16 10 C 0.17 4.77 6.37 85.63 0.55 5.31 16 11 C -0.06 -1.85 5.27 -19.88 -0.10 -1.96 16 12 C -0.17 -5.48 9.70 22.30 0.22 -5.26 16 13 C -0.08 -2.67 10.04 22.25 0.22 -2.45 16 14 C -0.23 -10.18 9.17 22.39 0.21 -9.97 16 15 C 0.12 5.62 6.65 22.58 0.15 5.77 16 16 O -0.24 -13.02 8.59 -22.74 -0.20 -13.21 16 17 C -0.40 -23.50 9.95 67.92 0.68 -22.83 16 18 H 0.08 4.95 5.44 -2.91 -0.02 4.93 16 19 C 0.01 0.52 5.49 84.83 0.47 0.99 16 20 N -0.92 -55.25 13.96 21.61 0.30 -54.95 16 21 Si 0.97 44.95 28.62 68.60 1.96 46.91 16 22 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 23 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 24 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 25 C -0.17 -6.34 9.65 22.39 0.22 -6.13 16 26 H 0.18 -1.81 8.14 -2.39 -0.02 -1.83 16 27 H 0.18 -2.31 8.14 -2.39 -0.02 -2.33 16 28 H 0.15 -0.51 8.14 -2.39 -0.02 -0.53 16 29 H 0.12 1.44 6.46 -2.39 -0.02 1.42 16 30 H 0.18 -0.86 8.14 -2.39 -0.02 -0.88 16 31 H 0.17 -0.30 8.14 -2.39 -0.02 -0.32 16 32 H 0.42 10.90 8.64 -96.74 -0.84 10.07 16 33 H 0.09 2.35 7.69 -2.39 -0.02 2.33 16 34 H 0.09 2.26 8.08 -2.39 -0.02 2.24 16 35 H 0.14 3.80 8.06 -2.91 -0.02 3.78 16 36 H 0.14 4.13 8.06 -2.91 -0.02 4.11 16 37 H 0.11 5.35 5.64 -2.91 -0.02 5.34 16 38 H 0.28 15.58 8.31 -92.71 -0.77 14.81 16 39 H 0.13 4.67 8.06 -2.91 -0.02 4.65 16 Total: -1.00 -95.22 358.43 -0.28 -95.49 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: 0.26 Total: 14.61 kcal Atomic # 6 Polarization: -39.51 SS G_CDS: 4.99 Total: -34.52 kcal Atomic # 7 Polarization: -115.38 SS G_CDS: -0.45 Total: -115.83 kcal Atomic # 8 Polarization: -103.16 SS G_CDS: -6.64 Total: -109.80 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.96 Total: 46.91 kcal Atomic # 16 Polarization: 103.53 SS G_CDS: -0.40 Total: 103.13 kcal Total: -95.22 -0.28 -95.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434551899.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.874 kcal (2) G-P(sol) polarization free energy of solvation -95.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds