Wall clock time and date at job start Wed Apr 1 2020 05:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30640 * 1 3 3 Si 1.86809 * 120.00076 * 2 1 4 4 H 1.48492 * 109.46938 * 239.99699 * 3 2 1 5 5 H 1.48498 * 109.47003 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46884 * 120.00043 * 3 2 1 7 7 C 1.40300 * 120.00046 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00091 * 177.09410 * 7 2 1 9 9 C 1.40491 * 119.99736 * 357.08239 * 7 2 1 10 10 C 1.44201 * 123.72198 * 28.00516 * 9 7 2 11 11 C 1.32739 * 114.43586 * 180.29507 * 10 9 7 12 12 S 1.75474 * 111.37600 * 359.75180 * 11 10 9 13 13 C 1.39604 * 123.72294 * 207.83684 * 9 7 2 14 14 C 1.46156 * 125.22715 * 0.02562 * 13 9 7 15 15 O 1.21802 * 120.00346 * 359.71018 * 14 13 9 16 16 N 1.34777 * 119.99610 * 179.71816 * 14 13 9 17 17 C 1.39909 * 120.00023 * 184.94463 * 16 14 13 18 18 C 1.37882 * 120.47311 * 122.18600 * 17 16 14 19 19 C 1.40189 * 119.10440 * 180.02562 * 18 17 16 20 20 C 1.35286 * 120.03752 * 359.72268 * 19 18 17 21 21 N 1.35908 * 120.96654 * 0.55487 * 20 19 18 22 22 C 1.46500 * 119.53608 * 179.71585 * 21 20 19 23 23 C 1.50699 * 109.47114 * 269.72517 * 22 21 20 24 24 O 1.20826 * 119.99961 * 0.02562 * 23 22 21 25 25 O 1.34238 * 120.00009 * 180.02562 * 23 22 21 26 26 C 1.34647 * 120.91637 * 359.44393 * 21 20 19 27 27 O 1.22047 * 120.04695 * 180.29702 * 26 21 20 28 28 H 0.97003 * 120.00326 * 0.02562 * 1 2 3 29 29 H 1.07997 * 122.78367 * 0.02562 * 10 9 7 30 30 H 1.07996 * 124.31453 * 179.75291 * 11 10 9 31 31 H 0.97007 * 120.00012 * 4.93859 * 16 14 13 32 32 H 1.07996 * 120.44979 * 0.03779 * 18 17 16 33 33 H 1.08001 * 119.98231 * 179.97438 * 19 18 17 34 34 H 1.08002 * 119.51606 * 180.27174 * 20 19 18 35 35 H 1.09002 * 109.47073 * 149.73503 * 22 21 20 36 36 H 1.08996 * 109.47900 * 29.72727 * 22 21 20 37 37 H 0.96705 * 116.99727 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6178 0.0000 4 1 3.0942 1.6964 -1.2124 5 1 1.2755 2.7465 -0.0006 6 1 3.0942 1.6964 1.2125 7 6 2.0079 -1.2150 -0.0005 8 1 3.0869 -1.2156 -0.0480 9 6 1.3068 -2.4309 0.0608 10 6 -0.0340 -2.6080 -0.4394 11 6 -0.5220 -3.8323 -0.2810 12 16 0.6414 -4.8884 0.5002 13 6 1.8325 -3.6019 0.6099 14 6 3.1662 -3.7350 1.1925 15 8 3.9174 -2.7766 1.2197 16 7 3.5650 -4.9184 1.6997 17 6 4.7996 -5.0205 2.3497 18 6 4.8686 -5.4607 3.6546 19 6 6.1207 -5.5515 4.2784 20 6 7.2415 -5.2151 3.5994 21 7 7.1757 -4.7757 2.3150 22 6 8.4086 -4.4139 1.6114 23 6 8.7002 -2.9514 1.8284 24 8 7.9547 -2.2803 2.5021 25 8 9.7880 -2.3942 1.2733 26 6 5.9935 -4.6736 1.6785 27 8 5.9534 -4.2823 0.5232 28 1 -0.4851 0.8400 -0.0004 29 1 -0.5963 -1.8096 -0.9006 30 1 -1.5092 -4.1393 -0.5932 31 1 2.9959 -5.6993 1.6140 32 1 3.9701 -5.7320 4.1889 33 1 6.1911 -5.8942 5.3001 34 1 8.2022 -5.2925 4.0868 35 1 8.2883 -4.6059 0.5452 36 1 9.2355 -5.0103 1.9970 37 1 9.9332 -1.4530 1.4411 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574240928.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:47 Heat of formation + Delta-G solvation = -85.761094 kcal Electronic energy + Delta-G solvation = -27800.720153 eV Core-core repulsion = 23635.689418 eV Total energy + Delta-G solvation = -4165.030735 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.066 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.49147 -40.01159 -38.27873 -36.63083 -36.30987 -36.04559 -34.79409 -32.98673 -32.70327 -29.35970 -28.90993 -28.59247 -26.15361 -23.82510 -23.26756 -22.00572 -21.55498 -20.19708 -18.74103 -18.40906 -17.97848 -17.50900 -17.24212 -16.82085 -16.42246 -15.87995 -15.67466 -15.37532 -14.95087 -14.79951 -14.28512 -14.08874 -13.65365 -13.41028 -13.20010 -12.81154 -12.50988 -12.34268 -12.21346 -12.01764 -11.79605 -11.77348 -11.63719 -11.43548 -11.09641 -10.93469 -10.86557 -10.42635 -10.21630 -10.11718 -9.73724 -9.49389 -9.28081 -8.70830 -8.42490 -7.51542 -7.33481 -7.07488 -6.94895 -4.49416 0.88988 2.02907 2.09344 2.16821 2.30503 2.95435 3.03274 3.06132 3.12054 3.15621 3.64609 3.79818 3.89165 3.93408 4.06792 4.42184 4.51768 4.56217 4.85663 4.95842 5.08863 5.21444 5.28119 5.37392 5.78106 6.07943 6.12201 6.26050 6.32430 6.54559 6.64360 6.89409 7.07618 7.25282 7.26308 7.41812 7.52929 7.69641 7.75999 8.28103 8.38713 8.45571 8.64289 8.80223 9.63823 9.94335 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.010570 B = 0.004118 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2648.300152 B = 6797.342159 C = 8795.464418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.069 3.931 3 Si 0.927 3.073 4 H -0.260 1.260 5 H -0.276 1.276 6 H -0.259 1.259 7 C -0.375 4.375 8 H 0.107 0.893 9 C 0.142 3.858 10 C -0.098 4.098 11 C -0.206 4.206 12 S -0.053 6.053 13 C -0.421 4.421 14 C 0.601 3.399 15 O -0.530 6.530 16 N -0.681 5.681 17 C 0.071 3.929 18 C -0.068 4.068 19 C -0.198 4.198 20 C 0.104 3.896 21 N -0.490 5.490 22 C 0.107 3.893 23 C 0.460 3.540 24 O -0.487 6.487 25 O -0.517 6.517 26 C 0.520 3.480 27 O -0.508 6.508 28 H 0.287 0.713 29 H 0.153 0.847 30 H 0.138 0.862 31 H 0.400 0.600 32 H 0.136 0.864 33 H 0.146 0.854 34 H 0.157 0.843 35 H 0.140 0.860 36 H 0.133 0.867 37 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.342 -9.394 6.481 17.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.152 4.152 3 Si 0.751 3.249 4 H -0.184 1.184 5 H -0.201 1.201 6 H -0.183 1.183 7 C -0.406 4.406 8 H 0.125 0.875 9 C 0.130 3.870 10 C -0.130 4.130 11 C -0.340 4.340 12 S 0.202 5.798 13 C -0.540 4.540 14 C 0.399 3.601 15 O -0.409 6.409 16 N -0.331 5.331 17 C -0.028 4.028 18 C -0.092 4.092 19 C -0.222 4.222 20 C -0.020 4.020 21 N -0.206 5.206 22 C -0.017 4.017 23 C 0.299 3.701 24 O -0.372 6.372 25 O -0.329 6.329 26 C 0.318 3.682 27 O -0.385 6.385 28 H 0.098 0.902 29 H 0.170 0.830 30 H 0.156 0.844 31 H 0.237 0.763 32 H 0.154 0.846 33 H 0.164 0.836 34 H 0.174 0.826 35 H 0.158 0.842 36 H 0.150 0.850 37 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 13.271 -9.947 6.208 17.709 hybrid contribution -0.064 2.377 -0.137 2.382 sum 13.207 -7.570 6.072 16.389 Atomic orbital electron populations 1.69600 1.07935 1.30236 1.33342 1.26334 0.94974 1.02475 0.91431 0.86023 0.79829 0.78274 0.80810 1.18420 1.20107 1.18280 1.19918 0.96774 0.88685 1.35262 0.87532 1.17958 0.89979 0.91753 0.87289 1.21894 0.96101 0.95477 0.99544 1.24957 1.02113 0.98055 1.08840 1.82638 1.09978 1.17931 1.69259 1.22550 0.99613 0.98707 1.33107 1.16910 0.85636 0.80946 0.76652 1.90740 1.54494 1.37785 1.57838 1.43223 1.16265 1.12799 1.60789 1.18400 0.86771 1.05513 0.92082 1.21705 0.98491 0.97373 0.91628 1.20389 0.90815 1.09829 1.01181 1.21689 1.00712 0.95900 0.83673 1.45028 1.07735 1.55244 1.12597 1.21119 0.87721 0.89741 1.03075 1.23621 0.78293 0.91526 0.76705 1.90856 1.46643 1.63359 1.36342 1.84452 1.44883 1.32306 1.71266 1.17314 0.82855 0.80585 0.87459 1.91003 1.85025 1.45802 1.16665 0.90154 0.83000 0.84418 0.76329 0.84624 0.83627 0.82580 0.84239 0.84953 0.72643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.70 10.63 55.57 0.59 -19.11 16 2 C 0.07 1.77 5.47 -17.28 -0.09 1.67 16 3 Si 0.93 20.05 29.56 -169.99 -5.03 15.03 16 4 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 5 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 6 H -0.26 -5.83 7.11 56.52 0.40 -5.43 16 7 C -0.38 -10.76 8.41 -37.96 -0.32 -11.08 16 8 H 0.11 3.27 6.21 -52.48 -0.33 2.95 16 9 C 0.14 3.97 5.68 -106.20 -0.60 3.36 16 10 C -0.10 -2.47 9.07 -39.12 -0.35 -2.83 16 11 C -0.21 -4.60 11.06 28.85 0.32 -4.28 16 12 S -0.05 -1.17 22.26 -107.50 -2.39 -3.56 16 13 C -0.42 -11.25 6.50 -35.90 -0.23 -11.48 16 14 C 0.60 16.05 7.25 -13.08 -0.09 15.96 16 15 O -0.53 -16.05 12.88 -14.32 -0.18 -16.24 16 16 N -0.68 -14.68 5.18 -10.81 -0.06 -14.73 16 17 C 0.07 1.36 5.84 -83.14 -0.49 0.88 16 18 C -0.07 -0.96 10.07 -38.98 -0.39 -1.36 16 19 C -0.20 -2.11 10.00 -39.90 -0.40 -2.51 16 20 C 0.10 1.08 10.27 -16.80 -0.17 0.90 16 21 N -0.49 -6.87 2.08 -120.80 -0.25 -7.12 16 22 C 0.11 1.14 5.92 -5.19 -0.03 1.11 16 23 C 0.46 6.01 8.39 36.01 0.30 6.31 16 24 O -0.49 -8.87 17.19 -18.75 -0.32 -9.19 16 25 O -0.52 -4.95 13.42 -39.28 -0.53 -5.48 16 26 C 0.52 10.25 6.91 -15.16 -0.10 10.14 16 27 O -0.51 -12.19 14.74 -14.54 -0.21 -12.41 16 28 H 0.29 6.49 8.29 -40.82 -0.34 6.15 16 29 H 0.15 3.80 6.26 -52.49 -0.33 3.47 16 30 H 0.14 2.59 8.06 -52.49 -0.42 2.17 16 31 H 0.40 7.58 7.92 -40.82 -0.32 7.26 16 32 H 0.14 1.65 8.06 -52.49 -0.42 1.23 16 33 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.16 0.85 8.03 -52.49 -0.42 0.43 16 35 H 0.14 1.55 7.38 -51.93 -0.38 1.16 16 36 H 0.13 0.65 8.00 -51.93 -0.42 0.24 16 37 H 0.41 2.52 9.10 45.56 0.41 2.93 16 LS Contribution 345.50 15.07 5.21 5.21 Total: -1.00 -39.92 345.50 -8.03 -47.94 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -2.19 Total: 12.85 kcal Atomic # 6 Polarization: 9.47 SS G_CDS: -2.66 Total: 6.81 kcal Atomic # 7 Polarization: -41.25 SS G_CDS: 0.28 Total: -40.96 kcal Atomic # 8 Polarization: -42.07 SS G_CDS: -1.25 Total: -43.32 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.03 Total: 15.03 kcal Atomic # 16 Polarization: -1.17 SS G_CDS: -2.39 Total: -3.56 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -39.92 -8.03 -47.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574240928.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.818 kcal (2) G-P(sol) polarization free energy of solvation -39.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds