Wall clock time and date at job start Wed Apr 1 2020 05:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30640 * 1 3 3 Si 1.86809 * 120.00076 * 2 1 4 4 H 1.48492 * 109.46938 * 239.99699 * 3 2 1 5 5 H 1.48498 * 109.47003 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46884 * 120.00043 * 3 2 1 7 7 C 1.40300 * 120.00046 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00091 * 177.09410 * 7 2 1 9 9 C 1.40491 * 119.99736 * 357.08239 * 7 2 1 10 10 C 1.44201 * 123.72198 * 28.00516 * 9 7 2 11 11 C 1.32739 * 114.43586 * 180.29507 * 10 9 7 12 12 S 1.75474 * 111.37600 * 359.75180 * 11 10 9 13 13 C 1.39604 * 123.72294 * 207.83684 * 9 7 2 14 14 C 1.46156 * 125.22715 * 0.02562 * 13 9 7 15 15 O 1.21802 * 120.00346 * 359.71018 * 14 13 9 16 16 N 1.34777 * 119.99610 * 179.71816 * 14 13 9 17 17 C 1.39909 * 120.00023 * 184.94463 * 16 14 13 18 18 C 1.37882 * 120.47311 * 122.18600 * 17 16 14 19 19 C 1.40189 * 119.10440 * 180.02562 * 18 17 16 20 20 C 1.35286 * 120.03752 * 359.72268 * 19 18 17 21 21 N 1.35908 * 120.96654 * 0.55487 * 20 19 18 22 22 C 1.46500 * 119.53608 * 179.71585 * 21 20 19 23 23 C 1.50699 * 109.47114 * 269.72517 * 22 21 20 24 24 O 1.20826 * 119.99961 * 0.02562 * 23 22 21 25 25 O 1.34238 * 120.00009 * 180.02562 * 23 22 21 26 26 C 1.34647 * 120.91637 * 359.44393 * 21 20 19 27 27 O 1.22047 * 120.04695 * 180.29702 * 26 21 20 28 28 H 0.97003 * 120.00326 * 0.02562 * 1 2 3 29 29 H 1.07997 * 122.78367 * 0.02562 * 10 9 7 30 30 H 1.07996 * 124.31453 * 179.75291 * 11 10 9 31 31 H 0.97007 * 120.00012 * 4.93859 * 16 14 13 32 32 H 1.07996 * 120.44979 * 0.03779 * 18 17 16 33 33 H 1.08001 * 119.98231 * 179.97438 * 19 18 17 34 34 H 1.08002 * 119.51606 * 180.27174 * 20 19 18 35 35 H 1.09002 * 109.47073 * 149.73503 * 22 21 20 36 36 H 1.08996 * 109.47900 * 29.72727 * 22 21 20 37 37 H 0.96705 * 116.99727 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6178 0.0000 4 1 3.0942 1.6964 -1.2124 5 1 1.2755 2.7465 -0.0006 6 1 3.0942 1.6964 1.2125 7 6 2.0079 -1.2150 -0.0005 8 1 3.0869 -1.2156 -0.0480 9 6 1.3068 -2.4309 0.0608 10 6 -0.0340 -2.6080 -0.4394 11 6 -0.5220 -3.8323 -0.2810 12 16 0.6414 -4.8884 0.5002 13 6 1.8325 -3.6019 0.6099 14 6 3.1662 -3.7350 1.1925 15 8 3.9174 -2.7766 1.2197 16 7 3.5650 -4.9184 1.6997 17 6 4.7996 -5.0205 2.3497 18 6 4.8686 -5.4607 3.6546 19 6 6.1207 -5.5515 4.2784 20 6 7.2415 -5.2151 3.5994 21 7 7.1757 -4.7757 2.3150 22 6 8.4086 -4.4139 1.6114 23 6 8.7002 -2.9514 1.8284 24 8 7.9547 -2.2803 2.5021 25 8 9.7880 -2.3942 1.2733 26 6 5.9935 -4.6736 1.6785 27 8 5.9534 -4.2823 0.5232 28 1 -0.4851 0.8400 -0.0004 29 1 -0.5963 -1.8096 -0.9006 30 1 -1.5092 -4.1393 -0.5932 31 1 2.9959 -5.6993 1.6140 32 1 3.9701 -5.7320 4.1889 33 1 6.1911 -5.8942 5.3001 34 1 8.2022 -5.2925 4.0868 35 1 8.2883 -4.6059 0.5452 36 1 9.2355 -5.0103 1.9970 37 1 9.9332 -1.4530 1.4411 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574240928.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:46 Heat of formation + Delta-G solvation = -116.308260 kcal Electronic energy + Delta-G solvation = -27802.044777 eV Core-core repulsion = 23635.689418 eV Total energy + Delta-G solvation = -4166.355359 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.066 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.65602 -41.13853 -40.01475 -38.04965 -37.86457 -37.26839 -36.31367 -34.93127 -34.10448 -31.05069 -30.13052 -29.93278 -28.01477 -25.08460 -24.63251 -23.65300 -22.60146 -21.94663 -20.66815 -19.72523 -19.35341 -18.76666 -18.49264 -17.90801 -17.69350 -17.60144 -17.09030 -16.91105 -16.36835 -16.17479 -15.77732 -15.45433 -15.43291 -15.12078 -14.25865 -14.21369 -14.06878 -13.79081 -13.71819 -13.47501 -13.31788 -13.20257 -12.98656 -12.96532 -12.78504 -12.68450 -12.12778 -12.10486 -12.03130 -11.59685 -11.40419 -11.19056 -10.99732 -10.44097 -10.20580 -9.40998 -8.95750 -8.86260 -8.66001 -6.51680 -0.23910 0.26251 0.96791 1.01868 1.24525 1.27830 1.29696 1.33300 1.36495 1.69660 1.96662 2.02639 2.12240 2.48632 2.55186 2.78637 3.24729 3.58985 3.77737 3.97883 4.05739 4.17157 4.21145 4.35036 4.42295 4.68936 4.83777 4.95706 5.08129 5.24024 5.28101 5.37435 5.46630 5.53735 5.59936 5.80462 5.88021 6.03978 6.36290 6.51150 6.67100 6.79271 6.88483 7.00566 7.75583 8.05575 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.010570 B = 0.004118 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2648.300152 B = 6797.342159 C = 8795.464418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.039 3.961 3 Si 0.984 3.016 4 H -0.261 1.261 5 H -0.238 1.238 6 H -0.279 1.279 7 C -0.421 4.421 8 H 0.067 0.933 9 C 0.113 3.887 10 C -0.129 4.129 11 C -0.189 4.189 12 S 0.019 5.981 13 C -0.461 4.461 14 C 0.591 3.409 15 O -0.581 6.581 16 N -0.668 5.668 17 C -0.021 4.021 18 C -0.021 4.021 19 C -0.210 4.210 20 C 0.129 3.871 21 N -0.487 5.487 22 C 0.101 3.899 23 C 0.464 3.536 24 O -0.549 6.549 25 O -0.502 6.502 26 C 0.503 3.497 27 O -0.582 6.582 28 H 0.301 0.699 29 H 0.149 0.851 30 H 0.182 0.818 31 H 0.407 0.593 32 H 0.156 0.844 33 H 0.199 0.801 34 H 0.223 0.777 35 H 0.130 0.870 36 H 0.205 0.795 37 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.553 -11.383 8.991 20.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.180 4.180 3 Si 0.805 3.195 4 H -0.185 1.185 5 H -0.161 1.161 6 H -0.204 1.204 7 C -0.452 4.452 8 H 0.085 0.915 9 C 0.101 3.899 10 C -0.162 4.162 11 C -0.323 4.323 12 S 0.275 5.725 13 C -0.580 4.580 14 C 0.388 3.612 15 O -0.464 6.464 16 N -0.317 5.317 17 C -0.118 4.118 18 C -0.045 4.045 19 C -0.233 4.233 20 C 0.005 3.995 21 N -0.199 5.199 22 C -0.021 4.021 23 C 0.306 3.694 24 O -0.439 6.439 25 O -0.315 6.315 26 C 0.304 3.696 27 O -0.465 6.465 28 H 0.113 0.887 29 H 0.167 0.833 30 H 0.199 0.801 31 H 0.244 0.756 32 H 0.174 0.826 33 H 0.216 0.784 34 H 0.239 0.761 35 H 0.148 0.852 36 H 0.222 0.778 37 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges 14.526 -12.013 8.756 20.784 hybrid contribution -0.214 2.760 -0.708 2.857 sum 14.312 -9.253 8.049 18.847 Atomic orbital electron populations 1.69565 1.08244 1.31733 1.32437 1.26904 0.95941 1.04315 0.90861 0.85236 0.79027 0.75695 0.79577 1.18544 1.16088 1.20440 1.19775 0.95220 0.90979 1.39206 0.91480 1.18428 0.91708 0.92185 0.87573 1.21735 0.95496 0.96935 1.02012 1.25508 1.03557 0.96961 1.06239 1.82166 1.07341 1.15059 1.67980 1.23112 1.01219 1.00723 1.32954 1.17169 0.85444 0.81913 0.76632 1.90683 1.55898 1.39925 1.59871 1.42702 1.17589 1.11149 1.60238 1.18692 0.85673 1.12828 0.94587 1.22210 1.01271 0.91629 0.89393 1.21046 0.89060 1.09854 1.03309 1.22914 1.03755 0.91251 0.81569 1.45128 1.07352 1.53488 1.13968 1.21632 0.88178 0.89233 1.03048 1.24079 0.77772 0.92254 0.75251 1.90846 1.48648 1.64897 1.39490 1.84422 1.43230 1.33716 1.70154 1.17541 0.84650 0.80394 0.87024 1.90940 1.86235 1.49885 1.19472 0.88732 0.83329 0.80062 0.75571 0.82628 0.78446 0.76053 0.85200 0.77811 0.70828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -40.91 10.63 21.89 0.23 -40.68 16 2 C 0.04 2.12 5.47 85.37 0.47 2.59 16 3 Si 0.98 43.05 29.56 68.60 2.03 45.07 16 4 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 5 H -0.24 -8.88 7.11 99.48 0.71 -8.17 16 6 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 7 C -0.42 -26.13 8.41 23.32 0.20 -25.94 16 8 H 0.07 4.60 6.21 -2.91 -0.02 4.58 16 9 C 0.11 6.71 5.68 -20.89 -0.12 6.59 16 10 C -0.13 -6.71 9.07 22.61 0.21 -6.50 16 11 C -0.19 -8.25 11.06 66.65 0.74 -7.52 16 12 S 0.02 0.82 22.26 -56.49 -1.26 -0.44 16 13 C -0.46 -26.05 6.50 24.66 0.16 -25.89 16 14 C 0.59 34.03 7.25 86.30 0.63 34.65 16 15 O -0.58 -38.66 12.88 13.89 0.18 -38.48 16 16 N -0.67 -30.46 5.18 -306.30 -1.59 -32.04 16 17 C -0.02 -0.82 5.84 38.52 0.23 -0.60 16 18 C -0.02 -0.56 10.07 22.66 0.23 -0.33 16 19 C -0.21 -3.48 10.00 22.06 0.22 -3.26 16 20 C 0.13 2.05 10.27 83.38 0.86 2.90 16 21 N -0.49 -12.92 2.08 -654.24 -1.36 -14.27 16 22 C 0.10 1.95 5.92 85.63 0.51 2.46 16 23 C 0.46 11.81 8.39 71.24 0.60 12.40 16 24 O -0.55 -20.44 17.19 21.96 0.38 -20.06 16 25 O -0.50 -8.94 13.42 -51.50 -0.69 -9.63 16 26 C 0.50 20.71 6.91 85.01 0.59 21.30 16 27 O -0.58 -30.47 14.74 13.10 0.19 -30.28 16 28 H 0.30 13.62 8.29 -92.71 -0.77 12.85 16 29 H 0.15 7.66 6.26 -2.91 -0.02 7.64 16 30 H 0.18 6.24 8.06 -2.91 -0.02 6.21 16 31 H 0.41 16.08 7.92 -92.70 -0.73 15.35 16 32 H 0.16 3.39 8.06 -2.91 -0.02 3.36 16 33 H 0.20 1.30 8.06 -2.91 -0.02 1.28 16 34 H 0.22 0.61 8.03 -2.91 -0.02 0.59 16 35 H 0.13 2.90 7.38 -2.39 -0.02 2.88 16 36 H 0.21 0.86 8.00 -2.39 -0.02 0.84 16 37 H 0.43 4.83 9.10 -74.05 -0.67 4.16 16 Total: -1.00 -102.68 345.50 3.39 -99.29 By element: Atomic # 1 Polarization: 28.89 SS G_CDS: -0.22 Total: 28.67 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: 5.50 Total: 12.86 kcal Atomic # 7 Polarization: -84.28 SS G_CDS: -2.71 Total: -87.00 kcal Atomic # 8 Polarization: -98.51 SS G_CDS: 0.06 Total: -98.45 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.07 kcal Atomic # 16 Polarization: 0.82 SS G_CDS: -1.26 Total: -0.44 kcal Total: -102.68 3.39 -99.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574240928.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.021 kcal (2) G-P(sol) polarization free energy of solvation -102.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds