Wall clock time and date at job start Wed Apr 1 2020 05:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86797 * 119.99983 * 2 1 4 4 H 1.48499 * 109.47417 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46932 * 299.99481 * 3 2 1 6 6 H 1.48498 * 109.47559 * 59.99534 * 3 2 1 7 7 C 1.38803 * 120.00150 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00435 * 180.02562 * 7 2 1 9 9 S 1.76206 * 120.00097 * 0.02562 * 7 2 1 10 10 C 1.76198 * 100.00322 * 185.65701 * 9 7 2 11 11 C 1.39119 * 120.18881 * 6.86585 * 10 9 7 12 12 C 1.37906 * 120.04927 * 180.27758 * 11 10 9 13 13 C 1.38661 * 120.43546 * 359.72101 * 12 11 10 14 14 C 1.37799 * 120.38473 * 359.97438 * 13 12 11 15 15 C 1.39678 * 119.93999 * 0.02562 * 14 13 12 16 16 C 1.47429 * 120.21816 * 180.02562 * 15 14 13 17 17 O 1.21613 * 119.99888 * 180.02562 * 16 15 14 18 18 N 1.34773 * 119.99964 * 0.02562 * 16 15 14 19 19 C 1.46499 * 120.00007 * 179.97438 * 18 16 15 20 20 C 1.50701 * 109.47029 * 180.02562 * 19 18 16 21 21 C 1.35315 * 126.66275 * 90.30003 * 20 19 18 22 22 C 1.42302 * 103.91636 * 180.02562 * 21 20 19 23 23 C 1.48243 * 126.93913 * 179.91501 * 22 21 20 24 24 O 1.21412 * 119.99838 * 359.70281 * 23 22 21 25 25 O 1.34646 * 120.00120 * 179.43490 * 23 22 21 26 26 N 1.31018 * 106.11776 * 359.64705 * 22 21 20 27 27 O 1.20904 * 111.43054 * 0.22677 * 26 22 21 28 28 H 0.97000 * 119.99377 * 0.02562 * 1 2 3 29 29 H 1.08003 * 119.97399 * 359.97438 * 11 10 9 30 30 H 1.08000 * 119.78372 * 179.74515 * 12 11 10 31 31 H 1.08002 * 119.80785 * 180.02562 * 13 12 11 32 32 H 1.08005 * 120.03092 * 180.02562 * 14 13 12 33 33 H 0.97001 * 119.99795 * 0.02562 * 18 16 15 34 34 H 1.08994 * 109.47097 * 60.00332 * 19 18 16 35 35 H 1.08997 * 109.46903 * 299.99829 * 19 18 16 36 36 H 1.07993 * 128.03894 * 359.97438 * 21 20 19 37 37 H 0.96693 * 117.00553 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7095 1.3464 0.0006 5 1 1.8908 2.3964 -1.2126 6 1 1.8908 2.3965 1.2124 7 6 2.0096 -1.2021 0.0005 8 1 3.0896 -1.2021 0.0010 9 16 1.1286 -2.7281 0.0005 10 6 2.4710 -3.8564 0.1724 11 6 3.7582 -3.3822 0.4042 12 6 4.8076 -4.2676 0.5325 13 6 4.5896 -5.6337 0.4378 14 6 3.3210 -6.1233 0.2148 15 6 2.2465 -5.2408 0.0823 16 6 0.8866 -5.7579 -0.1559 17 8 -0.0460 -4.9859 -0.2710 18 7 0.6769 -7.0861 -0.2460 19 6 -0.6745 -7.6000 -0.4821 20 6 -0.6365 -9.1055 -0.5399 21 6 -0.7916 -9.9581 0.4993 22 6 -0.6689 -11.2460 -0.0934 23 6 -0.7556 -12.5557 0.5956 24 8 -0.9454 -12.5998 1.7940 25 8 -0.6293 -13.6965 -0.1085 26 7 -0.4697 -11.0405 -1.3719 27 8 -0.4497 -9.8598 -1.6317 28 1 -0.4849 0.8401 -0.0004 29 1 3.9364 -2.3196 0.4788 30 1 5.8058 -3.8946 0.7082 31 1 5.4188 -6.3181 0.5403 32 1 3.1576 -7.1885 0.1424 33 1 1.4207 -7.7019 -0.1537 34 1 -1.0519 -7.2092 -1.4270 35 1 -1.3301 -7.2844 0.3295 36 1 -0.9668 -9.7171 1.5373 37 1 -0.6933 -14.5259 0.3843 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574241498.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:43 Heat of formation + Delta-G solvation = -24.105799 kcal Electronic energy + Delta-G solvation = -26052.319724 eV Core-core repulsion = 21889.962564 eV Total energy + Delta-G solvation = -4162.357161 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.066 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -45.66426 -40.57993 -39.64011 -37.60398 -36.74203 -35.40441 -34.51180 -32.79829 -32.45309 -30.60536 -30.33334 -27.07167 -26.21433 -25.87153 -23.48583 -23.02932 -21.99073 -21.28923 -20.34043 -18.77946 -18.48294 -18.31915 -17.79739 -17.08669 -16.97068 -16.13343 -15.93356 -15.70655 -15.23073 -15.15466 -14.64618 -14.36472 -14.02719 -13.92919 -13.79745 -13.56025 -13.04985 -12.92044 -12.79084 -12.23981 -12.16509 -11.86547 -11.64664 -11.51719 -11.27160 -11.24584 -11.11249 -10.96007 -10.37800 -10.31941 -9.84960 -9.71579 -9.56507 -9.06996 -8.78659 -8.40584 -8.14902 -6.59436 -6.50910 -4.21681 0.40020 0.95976 1.44694 1.96536 2.05158 2.32053 2.41019 3.07515 3.09402 3.18064 3.34586 3.38550 3.41828 3.48218 4.02243 4.13713 4.34827 4.41605 4.62415 4.86920 4.90697 5.06335 5.17450 5.28618 5.30981 5.32284 5.49718 5.55568 5.77271 5.88088 6.05515 6.32368 6.40541 6.53955 6.77997 6.95928 7.08138 7.15761 7.40154 7.47939 7.53687 7.65534 8.12281 8.58860 8.95906 10.52428 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.020652 B = 0.002185 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.482625 B =12811.079547 C =13702.125061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.083 3.917 3 Si 0.920 3.080 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.595 4.595 8 H 0.092 0.908 9 S 0.187 5.813 10 C -0.056 4.056 11 C -0.152 4.152 12 C -0.075 4.075 13 C -0.186 4.186 14 C -0.060 4.060 15 C -0.179 4.179 16 C 0.558 3.442 17 O -0.503 6.503 18 N -0.739 5.739 19 C 0.204 3.796 20 C -0.037 4.037 21 C -0.156 4.156 22 C -0.023 4.023 23 C 0.573 3.427 24 O -0.491 6.491 25 O -0.499 6.499 26 N -0.300 5.300 27 O 0.145 5.855 28 H 0.275 0.725 29 H 0.140 0.860 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.399 0.601 34 H 0.099 0.901 35 H 0.109 0.891 36 H 0.190 0.810 37 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.267 -20.757 0.219 20.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.128 4.128 3 Si 0.745 3.255 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.742 4.742 8 H 0.110 0.890 9 S 0.452 5.548 10 C -0.176 4.176 11 C -0.177 4.177 12 C -0.097 4.097 13 C -0.211 4.211 14 C -0.080 4.080 15 C -0.194 4.194 16 C 0.348 3.652 17 O -0.380 6.380 18 N -0.397 5.397 19 C 0.080 3.920 20 C -0.099 4.099 21 C -0.179 4.179 22 C -0.179 4.179 23 C 0.414 3.586 24 O -0.376 6.376 25 O -0.310 6.310 26 N 0.005 4.995 27 O 0.062 5.938 28 H 0.085 0.915 29 H 0.157 0.843 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.128 0.872 33 H 0.234 0.766 34 H 0.117 0.883 35 H 0.127 0.873 36 H 0.208 0.792 37 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -0.956 -20.496 -0.868 20.537 hybrid contribution 2.211 0.455 1.266 2.588 sum 1.254 -20.041 0.398 20.084 Atomic orbital electron populations 1.69979 1.06230 1.28394 1.44337 1.25105 0.94988 0.99682 0.93008 0.86091 0.79968 0.81235 0.78203 1.19135 1.20205 1.20220 1.24091 0.97053 0.93973 1.59074 0.89032 1.84695 1.02275 0.93011 1.74837 1.23084 1.00810 0.96927 0.96770 1.21449 0.91695 1.00918 1.03666 1.21103 0.98181 0.93367 0.97080 1.20640 0.96346 0.95295 1.08794 1.20881 0.92629 0.97374 0.97104 1.18971 0.92140 0.92622 1.15694 1.18292 0.89248 0.80868 0.76817 1.90815 1.43495 1.55078 1.48585 1.45858 1.08664 1.07726 1.77421 1.19631 0.86824 0.80358 1.05212 1.24593 1.03534 0.96693 0.85124 1.22540 1.04574 0.88425 1.02349 1.22222 1.10929 0.93825 0.90900 1.19116 0.72670 0.82848 0.83977 1.90957 1.44461 1.87441 1.14777 1.84592 1.84158 1.16935 1.45321 1.74397 1.12922 0.96061 1.16134 1.84894 1.63741 1.11329 1.33881 0.91523 0.84299 0.86964 0.87046 0.87249 0.76573 0.88333 0.87339 0.79235 0.71870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.02 13.22 55.49 0.73 -23.29 16 2 C 0.08 2.22 5.49 -17.46 -0.10 2.13 16 3 Si 0.92 20.18 29.55 -169.99 -5.02 15.16 16 4 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 5 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 6 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 7 C -0.60 -15.88 9.00 30.94 0.28 -15.61 16 8 H 0.09 2.32 4.98 -52.48 -0.26 2.06 16 9 S 0.19 4.78 18.56 -107.50 -2.00 2.79 16 10 C -0.06 -1.21 6.14 -38.39 -0.24 -1.44 16 11 C -0.15 -3.04 9.22 -39.38 -0.36 -3.40 16 12 C -0.08 -1.22 10.03 -39.55 -0.40 -1.62 16 13 C -0.19 -2.71 10.02 -39.59 -0.40 -3.11 16 14 C -0.06 -0.88 9.53 -39.20 -0.37 -1.25 16 15 C -0.18 -3.27 5.89 -104.75 -0.62 -3.88 16 16 C 0.56 9.58 7.75 -12.52 -0.10 9.48 16 17 O -0.50 -10.55 13.77 5.27 0.07 -10.48 16 18 N -0.74 -8.76 5.50 -62.57 -0.34 -9.10 16 19 C 0.20 1.95 6.23 -5.19 -0.03 1.91 16 20 C -0.04 -0.31 6.84 -35.35 -0.24 -0.55 16 21 C -0.16 -1.31 10.92 -39.06 -0.43 -1.74 16 22 C -0.02 -0.22 7.24 -82.54 -0.60 -0.82 16 23 C 0.57 5.38 8.36 34.84 0.29 5.67 16 24 O -0.49 -5.54 17.74 -19.20 -0.34 -5.88 16 25 O -0.50 -3.44 13.44 -40.35 -0.54 -3.98 16 26 N -0.30 -3.18 12.12 33.29 0.40 -2.78 16 27 O 0.15 1.40 11.18 17.24 0.19 1.60 16 28 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.14 2.91 5.04 -52.48 -0.26 2.64 16 30 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 31 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 32 H 0.11 1.19 6.40 -52.48 -0.34 0.85 16 33 H 0.40 3.84 6.49 -40.82 -0.27 3.57 16 34 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.19 1.29 8.06 -52.49 -0.42 0.87 16 37 H 0.42 0.68 9.11 45.56 0.42 1.09 16 LS Contribution 349.85 15.07 5.27 5.27 Total: -1.00 -33.65 349.85 -6.84 -40.48 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -1.96 Total: 4.44 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: -3.30 Total: -14.23 kcal Atomic # 7 Polarization: -35.96 SS G_CDS: 0.79 Total: -35.17 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -0.62 Total: -18.74 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Atomic # 16 Polarization: 4.78 SS G_CDS: -2.00 Total: 2.79 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.65 -6.84 -40.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574241498.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.379 kcal (2) G-P(sol) polarization free energy of solvation -33.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds