Wall clock time and date at job start Wed Apr 1 2020 05:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86797 * 119.99983 * 2 1 4 4 H 1.48499 * 109.47417 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46932 * 299.99481 * 3 2 1 6 6 H 1.48498 * 109.47559 * 59.99534 * 3 2 1 7 7 C 1.38803 * 120.00150 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00435 * 180.02562 * 7 2 1 9 9 S 1.76206 * 120.00097 * 0.02562 * 7 2 1 10 10 C 1.76198 * 100.00322 * 185.65701 * 9 7 2 11 11 C 1.39119 * 120.18881 * 6.86585 * 10 9 7 12 12 C 1.37906 * 120.04927 * 180.27758 * 11 10 9 13 13 C 1.38661 * 120.43546 * 359.72101 * 12 11 10 14 14 C 1.37799 * 120.38473 * 359.97438 * 13 12 11 15 15 C 1.39678 * 119.93999 * 0.02562 * 14 13 12 16 16 C 1.47429 * 120.21816 * 180.02562 * 15 14 13 17 17 O 1.21613 * 119.99888 * 180.02562 * 16 15 14 18 18 N 1.34773 * 119.99964 * 0.02562 * 16 15 14 19 19 C 1.46499 * 120.00007 * 179.97438 * 18 16 15 20 20 C 1.50701 * 109.47029 * 180.02562 * 19 18 16 21 21 C 1.35315 * 126.66275 * 90.30003 * 20 19 18 22 22 C 1.42302 * 103.91636 * 180.02562 * 21 20 19 23 23 C 1.48243 * 126.93913 * 179.91501 * 22 21 20 24 24 O 1.21412 * 119.99838 * 359.70281 * 23 22 21 25 25 O 1.34646 * 120.00120 * 179.43490 * 23 22 21 26 26 N 1.31018 * 106.11776 * 359.64705 * 22 21 20 27 27 O 1.20904 * 111.43054 * 0.22677 * 26 22 21 28 28 H 0.97000 * 119.99377 * 0.02562 * 1 2 3 29 29 H 1.08003 * 119.97399 * 359.97438 * 11 10 9 30 30 H 1.08000 * 119.78372 * 179.74515 * 12 11 10 31 31 H 1.08002 * 119.80785 * 180.02562 * 13 12 11 32 32 H 1.08005 * 120.03092 * 180.02562 * 14 13 12 33 33 H 0.97001 * 119.99795 * 0.02562 * 18 16 15 34 34 H 1.08994 * 109.47097 * 60.00332 * 19 18 16 35 35 H 1.08997 * 109.46903 * 299.99829 * 19 18 16 36 36 H 1.07993 * 128.03894 * 359.97438 * 21 20 19 37 37 H 0.96693 * 117.00553 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7095 1.3464 0.0006 5 1 1.8908 2.3964 -1.2126 6 1 1.8908 2.3965 1.2124 7 6 2.0096 -1.2021 0.0005 8 1 3.0896 -1.2021 0.0010 9 16 1.1286 -2.7281 0.0005 10 6 2.4710 -3.8564 0.1724 11 6 3.7582 -3.3822 0.4042 12 6 4.8076 -4.2676 0.5325 13 6 4.5896 -5.6337 0.4378 14 6 3.3210 -6.1233 0.2148 15 6 2.2465 -5.2408 0.0823 16 6 0.8866 -5.7579 -0.1559 17 8 -0.0460 -4.9859 -0.2710 18 7 0.6769 -7.0861 -0.2460 19 6 -0.6745 -7.6000 -0.4821 20 6 -0.6365 -9.1055 -0.5399 21 6 -0.7916 -9.9581 0.4993 22 6 -0.6689 -11.2460 -0.0934 23 6 -0.7556 -12.5557 0.5956 24 8 -0.9454 -12.5998 1.7940 25 8 -0.6293 -13.6965 -0.1085 26 7 -0.4697 -11.0405 -1.3719 27 8 -0.4497 -9.8598 -1.6317 28 1 -0.4849 0.8401 -0.0004 29 1 3.9364 -2.3196 0.4788 30 1 5.8058 -3.8946 0.7082 31 1 5.4188 -6.3181 0.5403 32 1 3.1576 -7.1885 0.1424 33 1 1.4207 -7.7019 -0.1537 34 1 -1.0519 -7.2092 -1.4270 35 1 -1.3301 -7.2844 0.3295 36 1 -0.9668 -9.7171 1.5373 37 1 -0.6933 -14.5259 0.3843 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574241498.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:42 Heat of formation + Delta-G solvation = -48.658548 kcal Electronic energy + Delta-G solvation = -26053.384412 eV Core-core repulsion = 21889.962564 eV Total energy + Delta-G solvation = -4163.421848 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.066 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -46.41312 -41.26002 -40.98339 -38.97790 -37.38743 -36.47625 -35.27873 -34.73616 -33.46258 -31.88419 -31.74911 -28.03717 -27.80166 -26.93817 -24.55904 -24.01910 -23.35926 -22.00731 -21.66844 -20.13103 -19.19405 -19.14757 -19.09252 -18.25675 -17.70073 -17.38200 -17.03468 -16.89894 -16.74310 -16.28684 -15.90021 -15.46895 -15.30107 -15.17888 -14.67371 -14.63015 -14.56560 -14.28697 -13.77550 -13.39938 -13.27170 -12.98946 -12.86991 -12.84992 -12.79794 -12.51794 -12.25493 -12.02502 -11.84661 -11.54047 -11.40356 -11.32934 -10.85782 -10.38874 -10.21645 -9.89262 -9.74933 -8.43485 -8.42262 -6.20722 -0.33559 0.06029 0.24936 0.57134 1.29543 1.36989 1.41476 1.47554 1.61025 1.66669 1.69685 2.03032 2.21163 2.36782 2.77289 2.90188 3.07118 3.27122 3.43452 3.63807 3.87062 3.99182 4.05381 4.24848 4.29695 4.50931 4.58518 4.64434 4.67748 4.73698 4.89274 5.13717 5.25070 5.32691 5.38887 5.49004 5.59650 5.71245 6.12710 6.19164 6.53986 6.59699 6.80976 6.99109 7.31335 8.62388 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.020652 B = 0.002185 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.482625 B =12811.079547 C =13702.125061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.025 3.975 3 Si 0.990 3.010 4 H -0.258 1.258 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.602 4.602 8 H 0.094 0.906 9 S 0.073 5.927 10 C -0.072 4.072 11 C -0.176 4.176 12 C -0.070 4.070 13 C -0.160 4.160 14 C -0.053 4.053 15 C -0.180 4.180 16 C 0.556 3.444 17 O -0.546 6.546 18 N -0.715 5.715 19 C 0.205 3.795 20 C -0.028 4.028 21 C -0.145 4.145 22 C -0.034 4.034 23 C 0.579 3.421 24 O -0.515 6.515 25 O -0.496 6.496 26 N -0.314 5.314 27 O 0.145 5.855 28 H 0.275 0.725 29 H 0.118 0.882 30 H 0.146 0.854 31 H 0.162 0.838 32 H 0.160 0.840 33 H 0.414 0.586 34 H 0.099 0.901 35 H 0.117 0.883 36 H 0.207 0.793 37 H 0.443 0.557 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.144 -23.982 0.587 24.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.181 4.181 3 Si 0.812 3.188 4 H -0.182 1.182 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.748 4.748 8 H 0.111 0.889 9 S 0.332 5.668 10 C -0.190 4.190 11 C -0.201 4.201 12 C -0.091 4.091 13 C -0.183 4.183 14 C -0.073 4.073 15 C -0.193 4.193 16 C 0.345 3.655 17 O -0.425 6.425 18 N -0.372 5.372 19 C 0.082 3.918 20 C -0.091 4.091 21 C -0.167 4.167 22 C -0.190 4.190 23 C 0.421 3.579 24 O -0.402 6.402 25 O -0.311 6.311 26 N -0.009 5.009 27 O 0.060 5.940 28 H 0.085 0.915 29 H 0.135 0.865 30 H 0.164 0.836 31 H 0.180 0.820 32 H 0.177 0.823 33 H 0.252 0.748 34 H 0.117 0.883 35 H 0.135 0.865 36 H 0.224 0.776 37 H 0.307 0.693 Dipole moment (debyes) X Y Z Total from point charges 2.002 -23.879 -0.499 23.968 hybrid contribution 1.514 0.961 1.146 2.128 sum 3.516 -22.918 0.647 23.195 Atomic orbital electron populations 1.70121 1.07890 1.29065 1.46734 1.26095 0.95848 1.03297 0.92832 0.85029 0.78824 0.76605 0.78333 1.18178 1.19695 1.19590 1.24285 0.97077 0.94539 1.58926 0.88875 1.84810 1.06145 0.95150 1.80678 1.22998 0.99708 0.97425 0.98838 1.21444 0.92369 1.00864 1.05391 1.21522 0.98481 0.93900 0.95199 1.21303 0.97617 0.95087 1.04249 1.21427 0.91495 0.99300 0.95034 1.19403 0.94101 0.91860 1.13976 1.18299 0.88495 0.82206 0.76483 1.90822 1.44581 1.56650 1.50434 1.45585 1.10321 1.06029 1.75253 1.19673 0.85488 0.80998 1.05665 1.24260 1.04031 0.95835 0.84994 1.22749 1.03295 0.87735 1.02968 1.22461 1.10988 0.94646 0.90860 1.19045 0.72072 0.83262 0.83564 1.90951 1.45782 1.87815 1.15656 1.84556 1.83437 1.17536 1.45529 1.74402 1.13550 0.96348 1.16635 1.84884 1.63700 1.11206 1.34183 0.91539 0.86462 0.83590 0.82006 0.82266 0.74826 0.88338 0.86503 0.77624 0.69318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.04 13.22 21.65 0.29 -53.75 16 2 C 0.03 1.41 5.49 84.87 0.47 1.87 16 3 Si 0.99 43.18 29.55 68.60 2.03 45.21 16 4 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 5 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 6 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 7 C -0.60 -34.22 9.00 67.96 0.61 -33.61 16 8 H 0.09 5.02 4.98 -2.91 -0.01 5.01 16 9 S 0.07 4.04 18.56 -56.49 -1.05 2.99 16 10 C -0.07 -3.17 6.14 23.04 0.14 -3.03 16 11 C -0.18 -7.00 9.22 22.40 0.21 -6.79 16 12 C -0.07 -2.02 10.03 22.29 0.22 -1.79 16 13 C -0.16 -3.67 10.02 22.27 0.22 -3.45 16 14 C -0.05 -1.29 9.53 22.51 0.21 -1.07 16 15 C -0.18 -6.32 5.89 -19.95 -0.12 -6.44 16 16 C 0.56 18.79 7.75 86.66 0.67 19.46 16 17 O -0.55 -23.86 13.77 -4.07 -0.06 -23.92 16 18 N -0.72 -15.21 5.50 -470.11 -2.58 -17.80 16 19 C 0.21 3.56 6.23 85.63 0.53 4.10 16 20 C -0.03 -0.41 6.84 25.01 0.17 -0.24 16 21 C -0.14 -2.06 10.92 22.61 0.25 -1.81 16 22 C -0.03 -0.60 7.24 42.94 0.31 -0.28 16 23 C 0.58 9.68 8.36 70.48 0.59 10.27 16 24 O -0.51 -10.68 17.74 20.12 0.36 -10.32 16 25 O -0.50 -5.73 13.44 -55.55 -0.75 -6.48 16 26 N -0.31 -6.01 12.12 -49.52 -0.60 -6.61 16 27 O 0.14 2.48 11.18 71.86 0.80 3.28 16 28 H 0.28 15.20 8.31 -92.71 -0.77 14.43 16 29 H 0.12 5.13 5.04 -2.91 -0.01 5.11 16 30 H 0.15 3.23 8.06 -2.91 -0.02 3.21 16 31 H 0.16 2.32 8.06 -2.91 -0.02 2.29 16 32 H 0.16 2.33 6.40 -2.91 -0.02 2.31 16 33 H 0.41 6.20 6.49 -92.71 -0.60 5.60 16 34 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.21 2.20 8.06 -2.91 -0.02 2.18 16 37 H 0.44 0.38 9.11 -74.06 -0.67 -0.30 16 Total: -1.00 -80.91 349.85 2.85 -78.07 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -0.08 Total: 12.16 kcal Atomic # 6 Polarization: -27.31 SS G_CDS: 4.49 Total: -22.82 kcal Atomic # 7 Polarization: -75.27 SS G_CDS: -2.90 Total: -78.17 kcal Atomic # 8 Polarization: -37.80 SS G_CDS: 0.36 Total: -37.44 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Atomic # 16 Polarization: 4.04 SS G_CDS: -1.05 Total: 2.99 kcal Total: -80.91 2.85 -78.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574241498.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.407 kcal (2) G-P(sol) polarization free energy of solvation -80.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds