Wall clock time and date at job start Wed Apr 1 2020 06:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 O 1.42108 * 108.58007 * 2 1 4 4 O 1.42101 * 108.58077 * 228.97289 * 2 1 3 5 5 C 1.81397 * 101.92207 * 114.48432 * 2 1 3 6 6 C 1.50701 * 109.47515 * 180.02562 * 5 2 1 7 7 N 1.29018 * 124.91796 * 89.99803 * 6 5 2 8 8 C 1.31786 * 117.12875 * 180.02562 * 7 6 5 9 9 C 1.50693 * 122.75156 * 179.97438 * 8 7 6 10 10 N 1.46494 * 109.47431 * 275.02809 * 9 8 7 11 11 C 1.36941 * 120.00123 * 270.00470 * 10 9 8 12 12 H 1.08009 * 119.99655 * 326.20137 * 11 10 9 13 13 C 1.38807 * 120.00386 * 146.20190 * 11 10 9 14 14 N 1.31613 * 119.99831 * 337.69370 * 13 11 10 15 15 Si 1.86803 * 120.00247 * 157.69629 * 13 11 10 16 16 H 1.48504 * 109.46943 * 89.99712 * 15 13 11 17 17 H 1.48498 * 109.47315 * 209.99874 * 15 13 11 18 18 H 1.48507 * 109.47012 * 330.00153 * 15 13 11 19 19 C 1.46493 * 120.00207 * 89.99882 * 10 9 8 20 20 C 1.53000 * 109.47114 * 85.78830 * 19 10 9 21 21 C 1.50703 * 109.47385 * 180.02562 * 20 19 10 22 22 O 1.20834 * 119.99604 * 359.97438 * 21 20 19 23 23 O 1.34220 * 120.00207 * 180.02562 * 21 20 19 24 24 C 1.33635 * 114.49518 * 0.23496 * 8 7 6 25 25 S 1.70982 * 124.91272 * 270.00265 * 6 5 2 26 26 H 1.08993 * 109.47434 * 305.51591 * 1 2 3 27 27 H 1.09006 * 109.46822 * 65.51084 * 1 2 3 28 28 H 1.08994 * 109.47299 * 185.50983 * 1 2 3 29 29 H 1.09006 * 109.46870 * 60.00283 * 5 2 1 30 30 H 1.09003 * 109.47533 * 300.00494 * 5 2 1 31 31 H 1.09004 * 109.47008 * 155.02907 * 9 8 7 32 32 H 1.08999 * 109.47103 * 35.03099 * 9 8 7 33 33 H 0.97001 * 120.00152 * 179.97438 * 14 13 11 34 34 H 1.09007 * 109.47295 * 205.78737 * 19 10 9 35 35 H 1.08999 * 109.47196 * 325.78414 * 19 10 9 36 36 H 1.08999 * 109.47488 * 299.99766 * 20 19 10 37 37 H 1.09005 * 109.47054 * 60.00317 * 20 19 10 38 38 H 0.96701 * 117.00201 * 179.97438 * 23 21 20 39 39 H 1.08000 * 126.03587 * 179.76404 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8842 -1.0161 5 6 2.1887 -0.7356 1.6152 6 6 3.6826 -0.8171 1.7958 7 7 4.4143 0.1057 2.3228 8 6 5.7088 -0.1272 2.4047 9 6 6.6794 0.8622 2.9961 10 7 7.0829 1.8246 1.9681 11 6 8.1755 1.5699 1.1828 12 1 9.0219 1.0377 1.5914 13 6 8.1952 1.9955 -0.1383 14 7 7.0654 2.2353 -0.7693 15 14 9.8253 2.2280 -1.0206 16 1 10.2145 0.9577 -1.6840 17 1 9.6876 3.2977 -2.0413 18 1 10.8697 2.6132 -0.0375 19 6 6.3177 3.0596 1.7800 20 6 6.8283 4.1284 2.7484 21 6 6.0407 5.3987 2.5554 22 8 5.1615 5.4445 1.7277 23 8 6.3165 6.4794 3.3021 24 6 6.0909 -1.3106 1.9152 25 16 4.6533 -2.1460 1.3317 26 1 -0.3634 0.5969 0.8364 27 1 -0.3633 0.4260 -0.9353 28 1 -0.3633 -1.0228 0.0987 29 1 1.7610 -1.7369 1.6665 30 1 1.7609 -0.1170 2.4043 31 1 7.5587 0.3332 3.3638 32 1 6.2019 1.3907 3.8212 33 1 7.0791 2.5331 -1.6924 34 1 6.4395 3.4100 0.7550 35 1 5.2628 2.8666 1.9750 36 1 6.7065 3.7781 3.7734 37 1 7.8832 4.3214 2.5533 38 1 5.7848 7.2711 3.1419 39 1 7.1019 -1.6890 1.8847 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599753452.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:58:37 Heat of formation + Delta-G solvation = -84.607123 kcal Electronic energy + Delta-G solvation = -26779.127327 eV Core-core repulsion = 22749.590583 eV Total energy + Delta-G solvation = -4029.536744 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 1.98 seconds Orbital eigenvalues (eV) -39.61483 -39.29514 -36.81790 -36.02662 -35.81360 -35.39669 -32.65848 -31.55765 -30.36782 -29.67102 -28.07481 -26.20115 -24.61138 -22.99677 -21.42946 -19.93594 -19.17035 -18.79229 -17.62361 -17.39575 -16.72145 -16.49223 -15.97463 -15.82545 -15.79102 -15.45885 -14.86161 -14.70901 -14.05631 -13.67380 -13.55679 -13.50545 -13.28337 -13.12953 -12.96682 -12.56547 -12.32224 -12.24484 -11.86159 -11.78284 -11.74755 -11.10624 -11.07583 -11.04868 -10.96861 -10.85081 -10.75521 -10.58996 -10.15313 -10.07708 -9.88844 -9.68656 -9.19528 -8.83123 -8.53151 -8.15565 -6.75514 -5.83153 -3.39302 -0.13409 1.27858 1.81532 2.23657 2.74752 2.85459 3.33705 3.36735 3.43833 3.46113 3.66092 3.71902 3.98806 4.22613 4.45601 4.57676 4.66390 4.95179 5.17017 5.29758 5.46181 5.56091 5.59316 5.82341 5.90252 6.01380 6.04341 6.26185 6.45982 6.54442 6.69259 6.79816 6.98289 7.16586 7.73161 7.86650 8.32002 8.40475 8.49951 9.08365 9.70956 10.27059 11.15779 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.009158 B = 0.004523 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3056.809817 B = 6189.695457 C = 7303.720437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.662 4.662 2 S 2.414 3.586 3 O -0.902 6.902 4 O -0.927 6.927 5 C -0.526 4.526 6 C 0.017 3.983 7 N -0.427 5.427 8 C 0.067 3.933 9 C 0.207 3.793 10 N -0.562 5.562 11 C -0.274 4.274 12 H 0.069 0.931 13 C 0.016 3.984 14 N -0.864 5.864 15 Si 0.897 3.103 16 H -0.285 1.285 17 H -0.288 1.288 18 H -0.276 1.276 19 C 0.152 3.848 20 C -0.129 4.129 21 C 0.475 3.525 22 O -0.510 6.510 23 O -0.530 6.530 24 C -0.225 4.225 25 S 0.095 5.905 26 H 0.128 0.872 27 H 0.130 0.870 28 H 0.126 0.874 29 H 0.143 0.857 30 H 0.154 0.846 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.259 0.741 34 H 0.110 0.890 35 H 0.045 0.955 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.397 0.603 39 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.757 -5.343 7.816 14.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.810 4.810 2 S 2.591 3.409 3 O -0.899 6.899 4 O -0.923 6.923 5 C -0.655 4.655 6 C -0.261 4.261 7 N -0.144 5.144 8 C -0.067 4.067 9 C 0.077 3.923 10 N -0.279 5.279 11 C -0.404 4.404 12 H 0.086 0.914 13 C -0.187 4.187 14 N -0.504 5.504 15 Si 0.725 3.275 16 H -0.211 1.211 17 H -0.214 1.214 18 H -0.201 1.201 19 C 0.025 3.975 20 C -0.169 4.169 21 C 0.317 3.683 22 O -0.397 6.397 23 O -0.341 6.341 24 C -0.366 4.366 25 S 0.348 5.652 26 H 0.147 0.853 27 H 0.149 0.851 28 H 0.145 0.855 29 H 0.161 0.839 30 H 0.172 0.828 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.127 0.873 35 H 0.064 0.936 36 H 0.104 0.896 37 H 0.118 0.882 38 H 0.254 0.746 39 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -10.688 -5.814 6.536 13.812 hybrid contribution 0.287 0.932 0.099 0.980 sum -10.402 -4.882 6.635 13.269 Atomic orbital electron populations 1.30373 1.27580 1.11219 1.11875 1.08507 0.78214 0.76737 0.77419 1.93714 1.77843 1.33080 1.85223 1.93613 1.78740 1.67305 1.52691 1.28949 0.96512 1.14522 1.25553 1.25161 0.97429 0.96069 1.07443 1.66004 1.05848 1.28255 1.14270 1.21767 0.89620 0.94247 1.01076 1.19882 0.92226 0.88492 0.91708 1.44053 1.30687 1.13975 1.39139 1.19105 0.92613 1.37524 0.91155 0.91356 1.25266 0.96474 1.00883 0.96096 1.70027 1.24688 1.45098 1.10548 0.86413 0.83792 0.77822 0.79426 1.21149 1.21387 1.20085 1.20900 0.93027 0.83439 1.00099 1.22268 1.00867 0.89732 1.04049 1.24165 0.82085 0.84910 0.77149 1.90726 1.31502 1.83859 1.33654 1.84619 1.63048 1.23871 1.62609 1.26877 1.02274 0.99416 1.08052 1.83615 1.00706 1.21324 1.59576 0.85288 0.85144 0.85523 0.83927 0.82770 0.91467 0.92517 0.93016 0.87272 0.93618 0.89593 0.88158 0.74575 0.80788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -4.99 10.62 101.05 1.07 -3.91 16 2 S 2.41 33.81 5.34 -107.50 -0.57 33.23 16 3 O -0.90 -18.05 18.10 -57.83 -1.05 -19.10 16 4 O -0.93 -16.05 18.10 -57.83 -1.05 -17.09 16 5 C -0.53 -6.30 6.39 36.01 0.23 -6.07 16 6 C 0.02 0.30 6.65 -13.46 -0.09 0.21 16 7 N -0.43 -8.87 10.53 -8.06 -0.08 -8.95 16 8 C 0.07 1.40 6.32 -84.23 -0.53 0.87 16 9 C 0.21 4.21 6.12 -5.20 -0.03 4.18 16 10 N -0.56 -13.49 2.44 -174.62 -0.43 -13.92 16 11 C -0.27 -7.09 9.49 -15.06 -0.14 -7.23 16 12 H 0.07 1.70 7.92 -52.48 -0.42 1.28 16 13 C 0.02 0.43 4.93 -17.43 -0.09 0.35 16 14 N -0.86 -25.56 11.32 55.49 0.63 -24.93 16 15 Si 0.90 21.19 29.61 -169.99 -5.03 16.15 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 19 C 0.15 3.72 4.54 -4.05 -0.02 3.71 16 20 C -0.13 -2.54 6.13 -27.88 -0.17 -2.71 16 21 C 0.47 9.13 8.33 36.01 0.30 9.43 16 22 O -0.51 -11.69 16.74 -18.76 -0.31 -12.01 16 23 O -0.53 -7.93 13.42 -39.23 -0.53 -8.46 16 24 C -0.23 -4.27 11.12 29.12 0.32 -3.95 16 25 S 0.10 1.60 23.18 -107.50 -2.49 -0.89 16 26 H 0.13 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.13 0.93 8.14 -51.92 -0.42 0.51 16 28 H 0.13 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.14 1.05 8.14 -51.92 -0.42 0.62 16 30 H 0.15 1.44 8.14 -51.92 -0.42 1.01 16 31 H 0.07 1.23 8.00 -51.93 -0.42 0.81 16 32 H 0.06 1.06 8.07 -51.93 -0.42 0.64 16 33 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 34 H 0.11 3.12 5.27 -51.93 -0.27 2.85 16 35 H 0.05 1.19 8.06 -51.93 -0.42 0.77 16 36 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 37 H 0.10 1.96 8.14 -51.93 -0.42 1.54 16 38 H 0.40 4.10 9.10 45.56 0.41 4.51 16 39 H 0.17 2.97 8.06 -52.49 -0.42 2.55 16 LS Contribution 370.53 15.07 5.58 5.58 Total: -1.00 -39.98 370.53 -8.52 -48.50 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -4.04 Total: 7.01 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: 0.85 Total: -5.13 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: 0.12 Total: -47.80 kcal Atomic # 8 Polarization: -53.73 SS G_CDS: -2.93 Total: -56.66 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.15 kcal Atomic # 16 Polarization: 35.41 SS G_CDS: -3.07 Total: 32.34 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -39.98 -8.52 -48.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599753452.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.105 kcal (2) G-P(sol) polarization free energy of solvation -39.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.98 seconds