Wall clock time and date at job start Wed Apr 1 2020 06:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 O 1.42108 * 108.58007 * 2 1 4 4 O 1.42101 * 108.58077 * 228.97289 * 2 1 3 5 5 C 1.81397 * 101.92207 * 114.48432 * 2 1 3 6 6 C 1.50701 * 109.47515 * 180.02562 * 5 2 1 7 7 N 1.29018 * 124.91796 * 89.99803 * 6 5 2 8 8 C 1.31786 * 117.12875 * 180.02562 * 7 6 5 9 9 C 1.50693 * 122.75156 * 179.97438 * 8 7 6 10 10 N 1.46494 * 109.47431 * 275.02809 * 9 8 7 11 11 C 1.36941 * 120.00123 * 270.00470 * 10 9 8 12 12 H 1.08009 * 119.99655 * 326.20137 * 11 10 9 13 13 C 1.38807 * 120.00386 * 146.20190 * 11 10 9 14 14 N 1.31613 * 119.99831 * 337.69370 * 13 11 10 15 15 Si 1.86803 * 120.00247 * 157.69629 * 13 11 10 16 16 H 1.48504 * 109.46943 * 89.99712 * 15 13 11 17 17 H 1.48498 * 109.47315 * 209.99874 * 15 13 11 18 18 H 1.48507 * 109.47012 * 330.00153 * 15 13 11 19 19 C 1.46493 * 120.00207 * 89.99882 * 10 9 8 20 20 C 1.53000 * 109.47114 * 85.78830 * 19 10 9 21 21 C 1.50703 * 109.47385 * 180.02562 * 20 19 10 22 22 O 1.20834 * 119.99604 * 359.97438 * 21 20 19 23 23 O 1.34220 * 120.00207 * 180.02562 * 21 20 19 24 24 C 1.33635 * 114.49518 * 0.23496 * 8 7 6 25 25 S 1.70982 * 124.91272 * 270.00265 * 6 5 2 26 26 H 1.08993 * 109.47434 * 305.51591 * 1 2 3 27 27 H 1.09006 * 109.46822 * 65.51084 * 1 2 3 28 28 H 1.08994 * 109.47299 * 185.50983 * 1 2 3 29 29 H 1.09006 * 109.46870 * 60.00283 * 5 2 1 30 30 H 1.09003 * 109.47533 * 300.00494 * 5 2 1 31 31 H 1.09004 * 109.47008 * 155.02907 * 9 8 7 32 32 H 1.08999 * 109.47103 * 35.03099 * 9 8 7 33 33 H 0.97001 * 120.00152 * 179.97438 * 14 13 11 34 34 H 1.09007 * 109.47295 * 205.78737 * 19 10 9 35 35 H 1.08999 * 109.47196 * 325.78414 * 19 10 9 36 36 H 1.08999 * 109.47488 * 299.99766 * 20 19 10 37 37 H 1.09005 * 109.47054 * 60.00317 * 20 19 10 38 38 H 0.96701 * 117.00201 * 179.97438 * 23 21 20 39 39 H 1.08000 * 126.03587 * 179.76404 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8842 -1.0161 5 6 2.1887 -0.7356 1.6152 6 6 3.6826 -0.8171 1.7958 7 7 4.4143 0.1057 2.3228 8 6 5.7088 -0.1272 2.4047 9 6 6.6794 0.8622 2.9961 10 7 7.0829 1.8246 1.9681 11 6 8.1755 1.5699 1.1828 12 1 9.0219 1.0377 1.5914 13 6 8.1952 1.9955 -0.1383 14 7 7.0654 2.2353 -0.7693 15 14 9.8253 2.2280 -1.0206 16 1 10.2145 0.9577 -1.6840 17 1 9.6876 3.2977 -2.0413 18 1 10.8697 2.6132 -0.0375 19 6 6.3177 3.0596 1.7800 20 6 6.8283 4.1284 2.7484 21 6 6.0407 5.3987 2.5554 22 8 5.1615 5.4445 1.7277 23 8 6.3165 6.4794 3.3021 24 6 6.0909 -1.3106 1.9152 25 16 4.6533 -2.1460 1.3317 26 1 -0.3634 0.5969 0.8364 27 1 -0.3633 0.4260 -0.9353 28 1 -0.3633 -1.0228 0.0987 29 1 1.7610 -1.7369 1.6665 30 1 1.7609 -0.1170 2.4043 31 1 7.5587 0.3332 3.3638 32 1 6.2019 1.3907 3.8212 33 1 7.0791 2.5331 -1.6924 34 1 6.4395 3.4100 0.7550 35 1 5.2628 2.8666 1.9750 36 1 6.7065 3.7781 3.7734 37 1 7.8832 4.3214 2.5533 38 1 5.7848 7.2711 3.1419 39 1 7.1019 -1.6890 1.8847 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599753452.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:58:36 Heat of formation + Delta-G solvation = -118.396881 kcal Electronic energy + Delta-G solvation = -26780.592560 eV Core-core repulsion = 22749.590583 eV Total energy + Delta-G solvation = -4031.001977 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.16166 -40.76314 -38.03007 -37.73020 -37.03141 -36.94457 -34.09977 -33.40009 -31.91009 -30.50506 -29.44329 -27.91234 -26.42530 -24.50320 -23.03927 -21.57572 -20.66492 -19.91585 -19.22337 -18.86199 -18.20318 -17.79346 -17.36695 -17.20711 -17.09790 -16.91655 -16.64182 -16.10979 -15.73444 -15.27377 -14.88067 -14.80071 -14.48935 -14.12961 -13.97477 -13.95920 -13.91826 -13.46597 -13.44644 -13.10003 -13.02676 -12.89505 -12.70228 -12.64454 -12.49400 -12.39133 -12.21188 -11.99673 -11.88272 -11.73997 -11.60072 -11.50593 -10.66034 -10.52278 -10.24282 -9.58773 -8.70760 -7.83949 -5.44241 -1.16635 -0.10108 0.45226 0.78607 1.30807 1.45511 1.48894 1.58297 1.77166 1.91296 2.25751 2.52856 2.60971 3.03124 3.13269 3.28168 3.77489 3.83019 4.03531 4.08915 4.22512 4.28058 4.38348 4.42279 4.46398 4.56808 4.70605 4.85997 4.93138 4.99512 5.04818 5.25286 5.30156 5.64644 5.67115 5.88912 6.40757 6.87464 7.06534 7.12735 7.78742 8.32359 9.13058 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.009158 B = 0.004523 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3056.809817 B = 6189.695457 C = 7303.720437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.615 4.615 2 S 2.383 3.617 3 O -0.986 6.986 4 O -0.978 6.978 5 C -0.521 4.521 6 C 0.007 3.993 7 N -0.467 5.467 8 C 0.043 3.957 9 C 0.205 3.795 10 N -0.575 5.575 11 C -0.264 4.264 12 H 0.081 0.919 13 C -0.041 4.041 14 N -0.914 5.914 15 Si 0.958 3.042 16 H -0.285 1.285 17 H -0.302 1.302 18 H -0.257 1.257 19 C 0.162 3.838 20 C -0.119 4.119 21 C 0.486 3.514 22 O -0.556 6.556 23 O -0.510 6.510 24 C -0.244 4.244 25 S 0.138 5.862 26 H 0.161 0.839 27 H 0.140 0.860 28 H 0.172 0.828 29 H 0.197 0.803 30 H 0.185 0.815 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.246 0.754 34 H 0.066 0.934 35 H 0.015 0.985 36 H 0.116 0.884 37 H 0.106 0.894 38 H 0.422 0.578 39 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.177 -6.627 9.988 17.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.770 4.770 2 S 2.570 3.430 3 O -0.983 6.983 4 O -0.975 6.975 5 C -0.652 4.652 6 C -0.271 4.271 7 N -0.184 5.184 8 C -0.091 4.091 9 C 0.076 3.924 10 N -0.293 5.293 11 C -0.394 4.394 12 H 0.099 0.901 13 C -0.239 4.239 14 N -0.557 5.557 15 Si 0.786 3.214 16 H -0.212 1.212 17 H -0.229 1.229 18 H -0.181 1.181 19 C 0.035 3.965 20 C -0.158 4.158 21 C 0.330 3.670 22 O -0.446 6.446 23 O -0.323 6.323 24 C -0.384 4.384 25 S 0.392 5.608 26 H 0.179 0.821 27 H 0.159 0.841 28 H 0.190 0.810 29 H 0.215 0.785 30 H 0.202 0.798 31 H 0.106 0.894 32 H 0.087 0.913 33 H 0.056 0.944 34 H 0.084 0.916 35 H 0.034 0.966 36 H 0.134 0.866 37 H 0.124 0.876 38 H 0.283 0.717 39 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -12.018 -7.092 8.749 16.470 hybrid contribution 0.481 1.211 -0.430 1.373 sum -11.537 -5.881 8.319 15.391 Atomic orbital electron populations 1.29993 1.17924 1.15081 1.13991 1.08733 0.81957 0.74749 0.77587 1.93634 1.81573 1.36643 1.86429 1.93546 1.81784 1.67403 1.54806 1.29110 0.93305 1.18202 1.24595 1.26120 0.99955 0.95472 1.05510 1.66031 1.06196 1.29577 1.16631 1.21803 0.90241 0.95168 1.01896 1.19978 0.93260 0.88286 0.90829 1.44134 1.30662 1.15147 1.39405 1.19454 0.93447 1.35646 0.90852 0.90125 1.25986 0.98890 1.01881 0.97129 1.70246 1.26989 1.48288 1.10162 0.85444 0.80736 0.77007 0.78246 1.21187 1.22920 1.18135 1.20482 0.91771 0.85200 0.99050 1.21958 1.00688 0.89026 1.04160 1.23902 0.80983 0.85656 0.76488 1.90730 1.33505 1.84705 1.35705 1.84525 1.62971 1.23890 1.60929 1.27131 1.03880 0.99658 1.07770 1.83358 0.99075 1.20177 1.58217 0.82077 0.84119 0.81039 0.78517 0.79750 0.89399 0.91264 0.94436 0.91608 0.96612 0.86614 0.87594 0.71701 0.79561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.62 -6.45 10.62 113.37 1.20 -5.25 16 2 S 2.38 65.70 5.34 -56.49 -0.30 65.40 16 3 O -0.99 -41.98 18.10 -127.37 -2.31 -44.29 16 4 O -0.98 -34.50 18.10 -127.37 -2.31 -36.81 16 5 C -0.52 -11.20 6.39 71.24 0.45 -10.75 16 6 C 0.01 0.25 6.65 88.52 0.59 0.84 16 7 N -0.47 -19.68 10.53 -179.41 -1.89 -21.57 16 8 C 0.04 1.81 6.32 41.52 0.26 2.07 16 9 C 0.21 8.38 6.12 85.63 0.52 8.91 16 10 N -0.58 -28.26 2.44 -706.37 -1.72 -29.98 16 11 C -0.26 -13.83 9.49 84.03 0.80 -13.03 16 12 H 0.08 3.96 7.92 -2.91 -0.02 3.93 16 13 C -0.04 -2.30 4.93 84.86 0.42 -1.89 16 14 N -0.91 -57.47 11.32 21.65 0.24 -57.22 16 15 Si 0.96 44.92 29.61 68.60 2.03 46.95 16 16 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 17 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 18 H -0.26 -11.12 7.11 99.48 0.71 -10.42 16 19 C 0.16 8.30 4.54 86.38 0.39 8.69 16 20 C -0.12 -4.68 6.13 29.85 0.18 -4.50 16 21 C 0.49 18.66 8.33 71.24 0.59 19.25 16 22 O -0.56 -26.39 16.74 21.94 0.37 -26.02 16 23 O -0.51 -14.26 13.42 -51.32 -0.69 -14.95 16 24 C -0.24 -9.25 11.12 66.77 0.74 -8.51 16 25 S 0.14 4.53 23.18 -56.49 -1.31 3.22 16 26 H 0.16 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.14 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.17 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.20 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.18 2.85 8.14 -2.39 -0.02 2.83 16 31 H 0.09 3.14 8.00 -2.38 -0.02 3.12 16 32 H 0.07 2.58 8.07 -2.39 -0.02 2.56 16 33 H 0.25 15.35 8.31 -92.71 -0.77 14.58 16 34 H 0.07 4.03 5.27 -2.38 -0.01 4.01 16 35 H 0.02 0.86 8.06 -2.39 -0.02 0.85 16 36 H 0.12 3.86 8.14 -2.39 -0.02 3.84 16 37 H 0.11 4.09 8.14 -2.38 -0.02 4.07 16 38 H 0.42 7.75 9.10 -74.06 -0.67 7.08 16 39 H 0.19 6.33 8.06 -2.91 -0.02 6.30 16 Total: -1.00 -97.32 370.53 -1.29 -98.61 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: 0.42 Total: 20.81 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: 6.16 Total: -4.15 kcal Atomic # 7 Polarization: -105.40 SS G_CDS: -3.37 Total: -108.77 kcal Atomic # 8 Polarization: -117.14 SS G_CDS: -4.93 Total: -122.07 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Atomic # 16 Polarization: 70.23 SS G_CDS: -1.61 Total: 68.62 kcal Total: -97.32 -1.29 -98.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599753452.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.788 kcal (2) G-P(sol) polarization free energy of solvation -97.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds