Wall clock time and date at job start Wed Apr 1 2020 05:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99580 * 2 1 4 4 H 1.48503 * 109.46943 * 269.99623 * 3 2 1 5 5 H 1.48498 * 109.47278 * 29.99643 * 3 2 1 6 6 H 1.48500 * 109.47248 * 149.99594 * 3 2 1 7 7 C 1.38697 * 120.00268 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00241 * 180.02562 * 7 2 1 9 9 O 1.34814 * 119.99986 * 0.02562 * 7 2 1 10 10 C 1.35520 * 117.00329 * 185.06090 * 9 7 2 11 11 C 1.38838 * 120.15763 * 354.39850 * 10 9 7 12 12 C 1.38018 * 120.06990 * 179.97438 * 11 10 9 13 13 C 1.38567 * 120.40588 * 0.02562 * 12 11 10 14 14 C 1.37827 * 120.32168 * 0.02562 * 13 12 11 15 15 C 1.39667 * 119.91974 * 359.97438 * 14 13 12 16 16 C 1.47538 * 120.19899 * 180.02562 * 15 14 13 17 17 O 1.21581 * 120.00164 * 180.02562 * 16 15 14 18 18 N 1.34775 * 119.99614 * 359.97438 * 16 15 14 19 19 C 1.46508 * 119.99759 * 180.02562 * 18 16 15 20 20 C 1.50700 * 109.46979 * 180.02562 * 19 18 16 21 21 N 1.29398 * 124.70135 * 89.69905 * 20 19 18 22 22 C 1.30917 * 117.46238 * 179.82967 * 21 20 19 23 23 C 1.36765 * 113.93181 * 0.45027 * 22 21 20 24 24 C 1.46499 * 126.17643 * 179.76434 * 23 22 21 25 25 O 1.21614 * 120.00359 * 0.02669 * 24 23 22 26 26 O 1.34872 * 119.99850 * 180.02562 * 24 23 22 27 27 S 1.70923 * 124.70913 * 270.00034 * 20 19 18 28 28 H 0.97004 * 120.00647 * 0.02562 * 1 2 3 29 29 H 1.08006 * 119.96064 * 359.97438 * 11 10 9 30 30 H 1.08006 * 119.79858 * 180.27658 * 12 11 10 31 31 H 1.08006 * 119.84368 * 179.97438 * 13 12 11 32 32 H 1.08005 * 120.04179 * 180.02562 * 14 13 12 33 33 H 0.97000 * 120.00462 * 0.02562 * 18 16 15 34 34 H 1.08998 * 109.46951 * 300.00263 * 19 18 16 35 35 H 1.08996 * 109.46551 * 60.00267 * 19 18 16 36 36 H 1.08000 * 123.03278 * 180.20895 * 22 21 20 37 37 H 0.96705 * 117.00038 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5466 1.4404 0.7001 7 6 2.0087 -1.2011 0.0005 8 1 3.0887 -1.2011 0.0010 9 8 1.3347 -2.3687 0.0005 10 6 2.0687 -3.5029 0.1076 11 6 3.4556 -3.4401 0.0941 12 6 4.2013 -4.5963 0.2037 13 6 3.5746 -5.8259 0.3274 14 6 2.1988 -5.9074 0.3416 15 6 1.4310 -4.7460 0.2315 16 6 -0.0422 -4.8260 0.2466 17 8 -0.7071 -3.8128 0.1501 18 7 -0.6507 -6.0226 0.3664 19 6 -2.1136 -6.1022 0.3808 20 6 -2.5369 -7.5414 0.5241 21 7 -2.7337 -8.1424 1.6530 22 6 -3.1035 -9.3977 1.6123 23 6 -3.2199 -9.9009 0.3459 24 6 -3.6096 -11.2678 -0.0090 25 8 -3.8656 -12.0736 0.8652 26 8 -3.6845 -11.6326 -1.3053 27 16 -2.8167 -8.6082 -0.7816 28 1 -0.4851 0.8400 -0.0004 29 1 3.9514 -2.4854 -0.0024 30 1 5.2799 -4.5419 0.1972 31 1 4.1670 -6.7250 0.4122 32 1 1.7151 -6.8682 0.4386 33 1 -0.1203 -6.8311 0.4431 34 1 -2.5006 -5.5246 1.2203 35 1 -2.5086 -5.6979 -0.5512 36 1 -3.2952 -9.9840 2.4987 37 1 -3.9463 -12.5450 -1.4902 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601076208.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:48 Heat of formation + Delta-G solvation = -67.246061 kcal Electronic energy + Delta-G solvation = -26235.033316 eV Core-core repulsion = 22070.805454 eV Total energy + Delta-G solvation = -4164.227863 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.066 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.78136 -39.95896 -39.54037 -38.13496 -36.54438 -36.38909 -34.62954 -32.38037 -31.64122 -30.48801 -28.97750 -28.23629 -25.47525 -24.93776 -23.46414 -22.79540 -21.42609 -20.13918 -19.99128 -19.38496 -18.19882 -18.01504 -17.42867 -17.03723 -16.31321 -16.20075 -15.81773 -15.25392 -14.72734 -14.65540 -14.55577 -14.32723 -14.12724 -13.92502 -13.75433 -13.53727 -13.26502 -12.68849 -12.53708 -12.41896 -12.10265 -11.99572 -11.74792 -11.36401 -11.27531 -11.17603 -10.93461 -10.83132 -10.48602 -10.17076 -10.04387 -9.67829 -9.49951 -8.93824 -8.91178 -8.80427 -8.32797 -7.35807 -6.48180 -4.07995 -0.40820 0.68272 1.15385 1.65283 1.76347 2.27766 2.46388 2.48901 3.09919 3.11181 3.15876 3.45056 3.63661 3.76306 3.90720 4.43564 4.57877 4.60258 4.92365 5.02093 5.13013 5.25231 5.39474 5.47375 5.57977 5.62697 5.73027 5.90317 6.00955 6.07233 6.51095 6.59887 6.67120 6.86293 7.01742 7.14783 7.19052 7.25323 7.32301 7.64683 7.84185 7.94882 8.90136 8.94386 9.62688 10.65524 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.018533 B = 0.002289 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.436412 B =12230.464160 C =13254.622492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.045 3.955 3 Si 0.941 3.059 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.404 4.404 8 H 0.095 0.905 9 O -0.123 6.123 10 C 0.190 3.810 11 C -0.237 4.237 12 C -0.049 4.049 13 C -0.230 4.230 14 C -0.037 4.037 15 C -0.227 4.227 16 C 0.560 3.440 17 O -0.495 6.495 18 N -0.741 5.741 19 C 0.196 3.804 20 C 0.047 3.953 21 N -0.463 5.463 22 C 0.142 3.858 23 C -0.308 4.308 24 C 0.569 3.431 25 O -0.503 6.503 26 O -0.511 6.511 27 S 0.249 5.751 28 H 0.272 0.728 29 H 0.132 0.868 30 H 0.111 0.889 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.395 0.605 34 H 0.103 0.897 35 H 0.094 0.906 36 H 0.193 0.807 37 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.562 -19.181 -2.380 19.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.163 4.163 3 Si 0.765 3.235 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.190 1.190 7 C -0.479 4.479 8 H 0.112 0.888 9 O -0.021 6.021 10 C 0.130 3.870 11 C -0.256 4.256 12 C -0.068 4.068 13 C -0.249 4.249 14 C -0.056 4.056 15 C -0.232 4.232 16 C 0.350 3.650 17 O -0.368 6.368 18 N -0.399 5.399 19 C 0.069 3.931 20 C -0.226 4.226 21 N -0.178 5.178 22 C -0.020 4.020 23 C -0.431 4.431 24 C 0.411 3.589 25 O -0.393 6.393 26 O -0.323 6.323 27 S 0.508 5.492 28 H 0.082 0.918 29 H 0.150 0.850 30 H 0.129 0.871 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.230 0.770 34 H 0.121 0.879 35 H 0.112 0.888 36 H 0.210 0.790 37 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -4.355 -17.468 -2.842 18.226 hybrid contribution 0.448 -0.916 0.784 1.287 sum -3.907 -18.384 -2.058 18.907 Atomic orbital electron populations 1.70118 1.05980 1.27817 1.42395 1.25387 0.95814 0.98978 0.96116 0.85722 0.79014 0.79933 0.78817 1.19725 1.20110 1.19045 1.21502 0.91922 0.81059 1.53443 0.88816 1.84161 1.33593 1.11005 1.73328 1.19246 0.89867 0.87327 0.90547 1.21164 0.93350 0.99369 1.11690 1.20907 0.98699 0.92289 0.94893 1.20462 0.94026 0.97176 1.13256 1.20744 0.93912 0.95417 0.95504 1.18709 0.91363 0.92225 1.20945 1.18227 0.87959 0.82234 0.76603 1.90968 1.65621 1.33543 1.46703 1.45875 1.04668 1.09984 1.79369 1.19757 0.82967 0.85514 1.04855 1.27808 1.00845 1.02340 0.91650 1.66308 1.15128 1.08436 1.27885 1.22639 0.93314 0.89560 0.96461 1.25025 1.21628 0.98052 0.98407 1.18968 0.73459 0.85937 0.80492 1.90971 1.46425 1.52041 1.49827 1.84597 1.82058 1.38233 1.27409 1.84295 1.56524 0.99281 1.09063 0.91798 0.85000 0.87126 0.87242 0.87209 0.77046 0.87921 0.88811 0.79013 0.72031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.57 13.67 55.48 0.76 -23.82 16 2 C 0.05 1.23 5.49 -17.52 -0.10 1.13 16 3 Si 0.94 20.14 29.55 -169.99 -5.02 15.11 16 4 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 5 H -0.28 -5.81 7.11 56.52 0.40 -5.40 16 6 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 7 C -0.40 -11.16 9.49 30.90 0.29 -10.86 16 8 H 0.09 2.35 5.21 -52.49 -0.27 2.07 16 9 O -0.12 -3.53 7.84 -21.05 -0.16 -3.69 16 10 C 0.19 4.57 6.66 -38.60 -0.26 4.32 16 11 C -0.24 -4.93 9.16 -39.44 -0.36 -5.29 16 12 C -0.05 -0.84 10.03 -39.54 -0.40 -1.24 16 13 C -0.23 -3.65 10.02 -39.61 -0.40 -4.05 16 14 C -0.04 -0.61 9.53 -39.20 -0.37 -0.98 16 15 C -0.23 -4.74 5.89 -104.81 -0.62 -5.36 16 16 C 0.56 11.61 7.76 -12.47 -0.10 11.51 16 17 O -0.50 -12.81 15.17 -16.56 -0.25 -13.06 16 18 N -0.74 -11.18 5.50 -62.53 -0.34 -11.52 16 19 C 0.20 2.58 6.24 -5.19 -0.03 2.55 16 20 C 0.05 0.51 6.74 -13.30 -0.09 0.43 16 21 N -0.46 -5.41 10.50 -11.26 -0.12 -5.53 16 22 C 0.14 1.41 11.16 -18.47 -0.21 1.21 16 23 C -0.31 -2.93 6.52 -36.79 -0.24 -3.17 16 24 C 0.57 5.21 8.30 34.06 0.28 5.49 16 25 O -0.50 -5.78 17.66 -19.35 -0.34 -6.13 16 26 O -0.51 -3.22 13.33 -40.96 -0.55 -3.77 16 27 S 0.25 2.21 23.04 -107.50 -2.48 -0.27 16 28 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.13 2.71 5.64 -52.48 -0.30 2.42 16 30 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 31 H 0.11 1.41 8.06 -52.48 -0.42 0.98 16 32 H 0.11 1.40 6.40 -52.48 -0.34 1.07 16 33 H 0.39 4.94 6.49 -40.82 -0.27 4.68 16 34 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 35 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.19 1.58 8.06 -52.49 -0.42 1.15 16 37 H 0.42 0.66 9.11 45.56 0.42 1.07 16 LS Contribution 352.21 15.07 5.31 5.31 Total: -1.00 -36.21 352.21 -7.79 -44.00 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -2.00 Total: 7.67 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: -2.59 Total: -4.31 kcal Atomic # 7 Polarization: -41.16 SS G_CDS: 0.30 Total: -40.86 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: -1.30 Total: -26.64 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.11 kcal Atomic # 16 Polarization: 2.21 SS G_CDS: -2.48 Total: -0.27 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -36.21 -7.79 -44.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601076208.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.247 kcal (2) G-P(sol) polarization free energy of solvation -36.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds