Wall clock time and date at job start Wed Apr 1 2020 04:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86796 * 120.00333 * 2 1 4 4 H 1.48500 * 109.47580 * 240.00230 * 3 2 1 5 5 H 1.48504 * 109.46743 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47269 * 119.99683 * 3 2 1 7 7 C 1.39950 * 119.99970 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00140 * 162.22513 * 7 2 1 9 9 C 1.41397 * 119.99969 * 342.22606 * 7 2 1 10 10 C 1.40742 * 120.24118 * 335.27646 * 9 7 2 11 11 C 1.37599 * 119.74213 * 180.02562 * 10 9 7 12 12 C 1.38654 * 120.24782 * 359.72627 * 11 10 9 13 13 C 1.38615 * 120.50283 * 0.54883 * 12 11 10 14 14 S 1.76195 * 119.87887 * 179.72410 * 13 12 11 15 15 O 1.42099 * 106.40634 * 156.18828 * 14 13 12 16 16 O 1.42103 * 106.40250 * 23.26547 * 14 13 12 17 17 O 1.52204 * 107.21936 * 269.73275 * 14 13 12 18 18 C 1.35637 * 114.00168 * 74.99779 * 17 14 13 19 19 C 1.38695 * 120.15654 * 90.00383 * 18 17 14 20 20 C 1.38054 * 120.09427 * 179.97438 * 19 18 17 21 21 C 1.38573 * 120.39771 * 0.04182 * 20 19 18 22 22 C 1.37765 * 120.30667 * 359.97438 * 21 20 19 23 23 C 1.39758 * 119.90531 * 359.72557 * 22 21 20 24 24 C 1.47402 * 120.20080 * 180.29848 * 23 22 21 25 25 O 1.21508 * 120.00201 * 180.25560 * 24 23 22 26 26 O 1.34743 * 119.99792 * 0.24805 * 24 23 22 27 27 C 1.37641 * 120.24787 * 359.45007 * 13 12 11 28 28 H 0.96999 * 120.00074 * 0.02562 * 1 2 3 29 29 H 1.07996 * 120.12770 * 359.97438 * 10 9 7 30 30 H 1.07993 * 119.87157 * 180.02562 * 11 10 9 31 31 H 1.08005 * 119.75367 * 180.29517 * 12 11 10 32 32 H 1.08001 * 119.95680 * 359.97438 * 19 18 17 33 33 H 1.07999 * 119.80484 * 180.02562 * 20 19 18 34 34 H 1.08000 * 119.84277 * 179.97438 * 21 20 19 35 35 H 1.08001 * 120.04477 * 180.02562 * 22 21 20 36 36 H 0.96701 * 117.00167 * 180.02562 * 26 24 23 37 37 H 1.07998 * 120.13094 * 180.24739 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 3.0961 1.6964 -1.2125 5 1 1.2773 2.7464 0.0006 6 1 3.0960 1.6963 1.2125 7 6 2.0080 -1.2120 -0.0005 8 1 3.0493 -1.2342 -0.2861 9 6 1.3516 -2.4075 0.3727 10 6 0.2233 -2.3640 1.2130 11 6 -0.4072 -3.5337 1.5702 12 6 0.0616 -4.7514 1.1010 13 6 1.1753 -4.8065 0.2776 14 16 1.7612 -6.3633 -0.3033 15 8 2.4871 -6.0994 -1.4960 16 8 0.6557 -7.2544 -0.2473 17 8 2.7742 -6.8711 0.7129 18 6 2.2189 -7.3448 1.8562 19 6 1.8706 -8.6833 1.9591 20 6 1.3059 -9.1642 3.1235 21 6 1.0819 -8.3162 4.1963 22 6 1.4212 -6.9837 4.1119 23 6 1.9994 -6.4847 2.9415 24 6 2.3710 -5.0614 2.8464 25 8 2.8692 -4.6304 1.8254 26 8 2.1582 -4.2384 3.8918 27 6 1.8218 -3.6492 -0.0927 28 1 -0.4850 0.8400 -0.0004 29 1 -0.1456 -1.4164 1.5766 30 1 -1.2733 -3.5028 2.2145 31 1 -0.4423 -5.6642 1.3826 32 1 2.0413 -9.3505 1.1271 33 1 1.0369 -10.2074 3.1987 34 1 0.6392 -8.7018 5.1028 35 1 1.2451 -6.3266 4.9508 36 1 2.4179 -3.3133 3.7823 37 1 2.6869 -3.6940 -0.7376 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601077708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:22 Heat of formation + Delta-G solvation = -127.411795 kcal Electronic energy + Delta-G solvation = -29580.446843 eV Core-core repulsion = 25381.317247 eV Total energy + Delta-G solvation = -4199.129596 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.059 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.29051 -39.35808 -37.99802 -37.55210 -36.76430 -35.64699 -35.43425 -33.81807 -31.67315 -30.51623 -30.03486 -29.78930 -25.48692 -24.82229 -23.44257 -22.21304 -21.47698 -20.95623 -20.13781 -18.46749 -17.91702 -17.70700 -17.35435 -16.88230 -16.36585 -15.67270 -15.31730 -15.27951 -15.08541 -14.70533 -14.57508 -14.25977 -13.47907 -13.41251 -13.19341 -13.08265 -12.88855 -12.56789 -12.24253 -12.00781 -11.91804 -11.72359 -11.61623 -11.49793 -11.46649 -11.37500 -11.07710 -10.89768 -10.73353 -10.47988 -10.24689 -9.74306 -9.50774 -9.32632 -9.29454 -9.07460 -7.82984 -7.63041 -6.90663 -4.49454 0.27606 0.77579 1.28129 2.16548 2.59988 2.82489 2.92234 2.99807 3.02871 3.10823 3.18762 3.58082 3.83772 4.12790 4.38916 4.48979 4.61452 4.66804 4.86291 5.01364 5.05432 5.37578 5.44899 5.64630 5.84656 5.97231 6.01427 6.10024 6.13923 6.20687 6.56581 6.72121 6.79398 6.89028 6.91383 7.05873 7.25374 7.43820 7.75008 7.84423 7.97604 8.23502 8.43684 8.69264 8.75581 10.04494 Molecular weight = 348.06amu Principal moments of inertia in cm(-1) A = 0.017220 B = 0.004456 C = 0.004011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.614877 B = 6281.816197 C = 6979.060716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.457 4.457 8 H 0.082 0.918 9 C 0.095 3.905 10 C -0.128 4.128 11 C -0.113 4.113 12 C -0.169 4.169 13 C -0.629 4.629 14 S 2.671 3.329 15 O -0.941 6.941 16 O -0.974 6.974 17 O -0.657 6.657 18 C 0.134 3.866 19 C -0.110 4.110 20 C -0.076 4.076 21 C -0.122 4.122 22 C -0.053 4.053 23 C -0.109 4.109 24 C 0.499 3.501 25 O -0.459 6.459 26 O -0.512 6.512 27 C -0.068 4.068 28 H 0.283 0.717 29 H 0.122 0.878 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.146 0.854 33 H 0.142 0.858 34 H 0.140 0.860 35 H 0.150 0.850 36 H 0.418 0.582 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.331 -11.753 10.956 16.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.143 4.143 3 Si 0.736 3.264 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.486 4.486 8 H 0.100 0.900 9 C 0.091 3.909 10 C -0.148 4.148 11 C -0.132 4.132 12 C -0.190 4.190 13 C -0.720 4.720 14 S 2.771 3.229 15 O -0.939 6.939 16 O -0.972 6.972 17 O -0.614 6.614 18 C 0.091 3.909 19 C -0.130 4.130 20 C -0.095 4.095 21 C -0.140 4.140 22 C -0.071 4.071 23 C -0.112 4.112 24 C 0.341 3.659 25 O -0.345 6.345 26 O -0.325 6.325 27 C -0.089 4.089 28 H 0.094 0.906 29 H 0.140 0.860 30 H 0.113 0.887 31 H 0.119 0.881 32 H 0.164 0.836 33 H 0.160 0.840 34 H 0.157 0.843 35 H 0.168 0.832 36 H 0.277 0.723 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 1.486 -12.446 10.188 16.153 hybrid contribution 0.193 2.215 -0.087 2.225 sum 1.679 -10.231 10.102 14.476 Atomic orbital electron populations 1.69783 1.07629 1.29655 1.34731 1.25928 0.94751 1.01474 0.92168 0.86306 0.80098 0.79878 0.80154 1.18832 1.20293 1.18770 1.19604 0.98306 0.90967 1.39743 0.90024 1.17625 0.91829 0.91788 0.89648 1.21532 0.98114 0.96851 0.98255 1.20703 0.99022 0.93010 1.00494 1.20001 0.97952 0.97490 1.03567 1.29635 1.08833 1.17956 1.15571 1.02204 0.72269 0.75044 0.73416 1.93562 1.72027 1.85987 1.42356 1.93550 1.53541 1.64025 1.86117 1.85706 1.57983 1.81059 1.36673 1.17970 0.97161 0.92611 0.83147 1.21259 0.98786 0.93020 0.99947 1.21263 0.95778 1.00694 0.91726 1.21318 1.00052 0.93218 0.99433 1.21417 0.93632 0.95888 0.96183 1.19363 1.05131 0.91196 0.95515 1.20145 0.78559 0.86153 0.81007 1.91119 1.38317 1.76378 1.28638 1.84356 1.79782 1.25873 1.42524 1.20655 0.98722 0.91324 0.98214 0.90565 0.85989 0.88706 0.88095 0.83635 0.84031 0.84252 0.83200 0.72303 0.87264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.71 10.97 55.55 0.61 -19.10 16 2 C 0.07 1.81 5.14 -17.34 -0.09 1.72 16 3 Si 0.91 18.11 29.59 -169.99 -5.03 13.08 16 4 H -0.26 -5.27 7.11 56.52 0.40 -4.86 16 5 H -0.28 -5.38 7.11 56.52 0.40 -4.97 16 6 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 7 C -0.46 -11.77 9.05 -37.74 -0.34 -12.11 16 8 H 0.08 2.05 7.91 -52.49 -0.41 1.64 16 9 C 0.09 2.44 5.56 -106.82 -0.59 1.84 16 10 C -0.13 -3.10 8.70 -38.87 -0.34 -3.44 16 11 C -0.11 -2.49 10.02 -39.66 -0.40 -2.88 16 12 C -0.17 -3.69 7.28 -39.29 -0.29 -3.98 16 13 C -0.63 -14.47 3.08 -39.66 -0.12 -14.60 16 14 S 2.67 56.85 5.33 -107.50 -0.57 56.27 16 15 O -0.94 -22.38 17.26 -66.81 -1.15 -23.53 16 16 O -0.97 -20.37 15.58 -66.81 -1.04 -21.42 16 17 O -0.66 -12.50 8.73 -53.94 -0.47 -12.97 16 18 C 0.13 2.18 4.81 -38.67 -0.19 1.99 16 19 C -0.11 -1.40 9.18 -39.48 -0.36 -1.76 16 20 C -0.08 -0.71 10.03 -39.53 -0.40 -1.10 16 21 C -0.12 -1.06 10.02 -39.63 -0.40 -1.46 16 22 C -0.05 -0.60 9.61 -39.19 -0.38 -0.97 16 23 C -0.11 -1.67 5.16 -104.86 -0.54 -2.21 16 24 C 0.50 8.66 6.15 34.46 0.21 8.87 16 25 O -0.46 -9.50 10.54 -26.60 -0.28 -9.78 16 26 O -0.51 -7.37 12.68 -40.61 -0.51 -7.89 16 27 C -0.07 -1.71 6.90 -38.87 -0.27 -1.98 16 28 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16 29 H 0.12 3.02 6.18 -52.49 -0.32 2.70 16 30 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 31 H 0.10 2.04 7.59 -52.48 -0.40 1.65 16 32 H 0.15 1.59 8.06 -52.49 -0.42 1.17 16 33 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 34 H 0.14 0.73 8.06 -52.49 -0.42 0.30 16 35 H 0.15 1.40 7.61 -52.49 -0.40 1.00 16 36 H 0.42 5.14 9.11 45.56 0.42 5.56 16 37 H 0.11 2.76 7.60 -52.49 -0.40 2.37 16 LS Contribution 329.24 15.07 4.96 4.96 Total: -1.00 -32.42 329.24 -10.32 -42.74 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -2.35 Total: 9.68 kcal Atomic # 6 Polarization: -27.58 SS G_CDS: -4.48 Total: -32.07 kcal Atomic # 7 Polarization: -19.71 SS G_CDS: 0.61 Total: -19.10 kcal Atomic # 8 Polarization: -72.12 SS G_CDS: -3.46 Total: -75.58 kcal Atomic # 14 Polarization: 18.11 SS G_CDS: -5.03 Total: 13.08 kcal Atomic # 16 Polarization: 56.85 SS G_CDS: -0.57 Total: 56.27 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.42 -10.32 -42.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601077708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.668 kcal (2) G-P(sol) polarization free energy of solvation -32.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds