Wall clock time and date at job start Wed Apr 1 2020 05:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30800 * 122.99649 * 2 1 4 4 C 1.30172 * 117.30117 * 179.97438 * 3 2 1 5 5 N 1.38254 * 124.73489 * 179.97438 * 4 3 2 6 6 C 1.34779 * 119.99670 * 180.02562 * 5 4 3 7 7 O 1.21583 * 120.00399 * 0.02562 * 6 5 4 8 8 C 1.47471 * 119.99624 * 179.72485 * 6 5 4 9 9 C 1.39699 * 120.20379 * 0.27571 * 8 6 5 10 10 C 1.37813 * 119.92035 * 180.02562 * 9 8 6 11 11 C 1.38587 * 120.32601 * 359.97438 * 10 9 8 12 12 C 1.38024 * 120.40837 * 0.02562 * 11 10 9 13 13 C 1.38839 * 120.07185 * 359.71958 * 12 11 10 14 14 O 1.35517 * 120.15971 * 180.29224 * 13 12 11 15 15 C 1.34804 * 117.00150 * 354.40433 * 14 13 12 16 16 H 1.08004 * 120.00395 * 5.06285 * 15 14 13 17 17 C 1.38704 * 120.00019 * 185.05788 * 15 14 13 18 18 N 1.31519 * 120.00166 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00165 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47431 * 60.00015 * 19 17 15 21 21 H 1.48500 * 109.47097 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47153 * 300.00038 * 19 17 15 23 23 S 1.70913 * 110.52837 * 0.22977 * 4 3 2 24 24 C 1.36840 * 122.99738 * 179.97438 * 2 1 3 25 25 C 1.46126 * 126.12606 * 0.02562 * 24 2 1 26 26 O 1.21667 * 119.99952 * 359.97438 * 25 24 2 27 27 O 1.34934 * 120.00053 * 179.97438 * 25 24 2 28 28 H 1.08996 * 109.46705 * 90.02733 * 1 2 3 29 29 H 1.09007 * 109.46939 * 210.02717 * 1 2 3 30 30 H 1.08995 * 109.46705 * 330.02118 * 1 2 3 31 31 H 0.97000 * 120.00067 * 359.97438 * 5 4 3 32 32 H 1.08001 * 120.03867 * 0.02562 * 9 8 6 33 33 H 1.07998 * 119.83958 * 179.97438 * 10 9 8 34 34 H 1.08000 * 119.79379 * 179.97438 * 11 10 9 35 35 H 1.07994 * 119.96668 * 180.02562 * 12 11 10 36 36 H 0.96994 * 120.00640 * 179.97438 * 18 17 15 37 37 H 0.96699 * 113.99919 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2194 1.0970 0.0000 4 6 3.5147 0.9678 0.0005 5 7 4.4113 2.0202 0.0001 6 6 5.7368 1.7762 0.0002 7 8 6.1441 0.6306 0.0002 8 6 6.6932 2.8987 -0.0064 9 6 6.2299 4.2166 -0.0069 10 6 7.1288 5.2612 -0.0137 11 6 8.4920 5.0113 -0.0194 12 6 8.9645 3.7145 -0.0189 13 6 8.0739 2.6495 -0.0068 14 8 8.5359 1.3756 -0.0004 15 6 9.8677 1.2069 -0.1233 16 1 10.5218 2.0662 -0.1387 17 6 10.3981 -0.0703 -0.2299 18 7 9.6017 -1.1168 -0.2116 19 14 12.2436 -0.3041 -0.3995 20 1 12.9265 0.2700 0.7876 21 1 12.5522 -1.7534 -0.4959 22 1 12.7193 0.3854 -1.6258 23 16 3.9522 -0.6843 -0.0053 24 6 2.2523 -1.1477 0.0005 25 6 1.7316 -2.5130 0.0006 26 8 0.5303 -2.7059 0.0007 27 8 2.5830 -3.5598 0.0006 28 1 -0.3632 -0.0005 -1.0276 29 1 -0.3633 -0.8898 0.5143 30 1 -0.3632 0.8902 0.5135 31 1 4.0864 2.9342 -0.0010 32 1 5.1686 4.4167 -0.0021 33 1 6.7693 6.2796 -0.0145 34 1 9.1888 5.8364 -0.0250 35 1 10.0282 3.5280 -0.0229 36 1 9.9725 -2.0099 -0.2865 37 1 2.1458 -4.4223 0.0011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607966704.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:13 Heat of formation + Delta-G solvation = -92.186146 kcal Electronic energy + Delta-G solvation = -27000.397001 eV Core-core repulsion = 22835.087655 eV Total energy + Delta-G solvation = -4165.309346 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.066 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.99138 -41.45606 -40.65445 -39.96235 -38.14261 -37.15819 -36.27582 -34.34793 -32.88033 -31.70747 -30.64499 -29.72466 -27.48817 -26.39699 -24.39982 -24.28441 -23.14292 -22.30359 -20.97533 -20.02743 -19.77379 -19.15482 -18.82474 -18.17229 -17.63985 -17.24020 -16.96316 -16.62135 -16.35901 -16.15350 -15.98789 -15.72250 -15.40085 -15.15669 -14.90112 -14.63516 -14.37368 -14.33623 -13.73840 -13.56697 -13.54939 -13.03152 -12.90112 -12.65970 -12.53668 -12.46882 -12.33942 -12.16265 -12.00473 -11.70985 -11.46186 -11.05950 -10.91227 -10.82617 -10.53037 -9.98684 -9.44114 -9.08954 -8.46366 -6.16495 -0.99836 -0.14887 -0.05136 0.66310 0.68543 1.02832 1.32282 1.35423 1.46660 1.51799 1.68234 1.92417 2.15037 2.15401 2.82626 3.15277 3.19224 3.36048 3.67340 3.85278 4.00807 4.24758 4.40362 4.46092 4.49104 4.56476 4.72739 4.76708 4.84398 4.87623 5.02823 5.09091 5.18486 5.38823 5.46363 5.53008 5.66683 5.81577 5.96792 6.10385 6.44870 6.76397 6.84534 6.93641 7.71957 8.72393 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.011502 B = 0.003434 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.856542 B = 8152.524764 C =10566.787439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.192 3.808 3 N -0.524 5.524 4 C 0.265 3.735 5 N -0.604 5.604 6 C 0.549 3.451 7 O -0.506 6.506 8 C -0.244 4.244 9 C -0.027 4.027 10 C -0.198 4.198 11 C -0.030 4.030 12 C -0.254 4.254 13 C 0.161 3.839 14 O -0.181 6.181 15 C -0.427 4.427 16 H 0.110 0.890 17 C -0.014 4.014 18 N -0.896 5.896 19 Si 1.017 2.983 20 H -0.255 1.255 21 H -0.275 1.275 22 H -0.255 1.255 23 S 0.295 5.705 24 C -0.396 4.396 25 C 0.574 3.426 26 O -0.524 6.524 27 O -0.503 6.503 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.437 0.563 32 H 0.160 0.840 33 H 0.166 0.834 34 H 0.156 0.844 35 H 0.128 0.872 36 H 0.272 0.728 37 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.310 8.109 0.152 13.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.049 3.951 3 N -0.248 5.248 4 C -0.099 4.099 5 N -0.256 5.256 6 C 0.341 3.659 7 O -0.381 6.381 8 C -0.249 4.249 9 C -0.045 4.045 10 C -0.216 4.216 11 C -0.048 4.048 12 C -0.273 4.273 13 C 0.104 3.896 14 O -0.083 6.083 15 C -0.503 4.503 16 H 0.127 0.873 17 C -0.215 4.215 18 N -0.531 5.531 19 Si 0.835 3.165 20 H -0.179 1.179 21 H -0.200 1.200 22 H -0.179 1.179 23 S 0.549 5.451 24 C -0.519 4.519 25 C 0.418 3.582 26 O -0.417 6.417 27 O -0.316 6.316 28 H 0.114 0.886 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.280 0.720 32 H 0.178 0.822 33 H 0.183 0.817 34 H 0.174 0.826 35 H 0.146 0.854 36 H 0.082 0.918 37 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges -10.259 7.213 0.157 12.542 hybrid contribution -0.256 -0.660 -0.050 0.709 sum -10.515 6.554 0.107 12.391 Atomic orbital electron populations 1.20737 0.83748 1.05051 1.04691 1.21026 0.99062 0.83827 0.91148 1.66175 1.01454 1.32125 1.25078 1.23931 0.91154 0.95649 0.99141 1.42720 1.03733 1.08793 1.70389 1.18951 0.80898 0.90161 0.75845 1.90895 1.76428 1.23343 1.47428 1.18663 0.89024 0.93410 1.23811 1.21324 1.01195 0.88992 0.92980 1.21183 0.92270 1.00046 1.08147 1.21518 0.97027 0.95151 0.91100 1.21327 1.00045 0.93152 1.12803 1.19924 0.92728 0.85898 0.91012 1.84123 1.25586 1.22038 1.76542 1.21983 0.79851 0.95110 1.53313 0.87303 1.26645 1.05859 0.93624 0.95390 1.70259 1.37980 0.99155 1.45691 0.84685 0.73657 0.78075 0.80036 1.17882 1.20008 1.17937 1.86108 0.99226 0.95307 1.64437 1.25198 1.00550 0.96445 1.29727 1.18741 0.83577 0.84157 0.71679 1.90865 1.16055 1.86175 1.48589 1.85068 1.41405 1.19501 1.85639 0.88617 0.88750 0.88770 0.71960 0.82218 0.81691 0.82604 0.85416 0.91848 0.70635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.81 9.71 71.24 0.69 -1.12 16 2 C 0.19 5.56 6.83 42.39 0.29 5.85 16 3 N -0.52 -15.86 10.53 -188.18 -1.98 -17.84 16 4 C 0.26 8.84 8.16 179.30 1.46 10.30 16 5 N -0.60 -18.77 5.32 -316.85 -1.69 -20.46 16 6 C 0.55 22.15 7.72 86.68 0.67 22.81 16 7 O -0.51 -25.68 12.58 16.92 0.21 -25.47 16 8 C -0.24 -9.31 5.89 -19.99 -0.12 -9.43 16 9 C -0.03 -0.69 9.54 22.52 0.21 -0.47 16 10 C -0.20 -4.48 10.02 22.25 0.22 -4.26 16 11 C -0.03 -0.80 10.03 22.30 0.22 -0.57 16 12 C -0.25 -9.61 9.16 22.36 0.20 -9.40 16 13 C 0.16 7.39 6.66 22.92 0.15 7.54 16 14 O -0.18 -10.46 7.84 0.97 0.01 -10.45 16 15 C -0.43 -23.78 9.49 67.93 0.64 -23.14 16 16 H 0.11 5.39 5.21 -2.91 -0.02 5.37 16 17 C -0.01 -0.79 5.49 84.85 0.47 -0.33 16 18 N -0.90 -54.68 13.67 21.62 0.30 -54.38 16 19 Si 1.02 41.37 29.55 68.60 2.03 43.39 16 20 H -0.25 -9.64 7.11 99.48 0.71 -8.93 16 21 H -0.28 -10.98 7.11 99.48 0.71 -10.27 16 22 H -0.26 -9.67 7.11 99.48 0.71 -8.97 16 23 S 0.30 10.82 20.01 -56.49 -1.13 9.69 16 24 C -0.40 -12.45 6.50 23.99 0.16 -12.29 16 25 C 0.57 16.35 8.25 69.87 0.58 16.93 16 26 O -0.52 -15.24 15.04 19.29 0.29 -14.95 16 27 O -0.50 -12.24 13.44 -58.50 -0.79 -13.03 16 28 H 0.10 1.83 8.14 -2.39 -0.02 1.82 16 29 H 0.09 2.14 6.04 -2.38 -0.01 2.12 16 30 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.44 9.82 6.85 -92.71 -0.63 9.18 16 32 H 0.16 2.64 6.40 -2.91 -0.02 2.62 16 33 H 0.17 2.28 8.06 -2.91 -0.02 2.26 16 34 H 0.16 2.93 8.06 -2.91 -0.02 2.90 16 35 H 0.13 4.91 5.64 -2.91 -0.02 4.89 16 36 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 37 H 0.43 5.62 8.98 -74.06 -0.67 4.95 16 Total: -1.00 -79.86 342.58 3.01 -76.86 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: -0.10 Total: 24.21 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: 5.86 Total: 2.42 kcal Atomic # 7 Polarization: -89.31 SS G_CDS: -3.37 Total: -92.68 kcal Atomic # 8 Polarization: -63.62 SS G_CDS: -0.28 Total: -63.90 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.39 kcal Atomic # 16 Polarization: 10.82 SS G_CDS: -1.13 Total: 9.69 kcal Total: -79.86 3.01 -76.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607966704.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.327 kcal (2) G-P(sol) polarization free energy of solvation -79.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds