Wall clock time and date at job start Wed Apr 1 2020 05:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86793 * 120.00244 * 2 1 4 4 H 1.48499 * 109.47072 * 275.41089 * 3 2 1 5 5 H 1.48503 * 109.46947 * 35.40890 * 3 2 1 6 6 H 1.48503 * 109.47306 * 155.40917 * 3 2 1 7 7 C 1.39943 * 119.99976 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00134 * 341.73392 * 7 2 1 9 9 C 1.41393 * 120.00104 * 161.73146 * 7 2 1 10 10 C 1.40728 * 120.24409 * 330.21879 * 9 7 2 11 11 C 1.37599 * 119.74473 * 180.02562 * 10 9 7 12 12 C 1.38653 * 120.24983 * 0.02562 * 11 10 9 13 13 C 1.38613 * 120.50114 * 359.97438 * 12 11 10 14 14 S 1.76200 * 119.87430 * 180.02562 * 13 12 11 15 15 O 1.42098 * 106.40573 * 23.51570 * 14 13 12 16 16 O 1.42102 * 106.40225 * 156.43875 * 14 13 12 17 17 N 1.65602 * 107.21861 * 269.97605 * 14 13 12 18 18 C 1.39020 * 119.99760 * 64.99799 * 17 14 13 19 19 C 1.39127 * 119.64336 * 179.97438 * 18 17 14 20 20 C 1.39545 * 118.92532 * 179.97438 * 19 18 17 21 21 C 1.48064 * 120.88498 * 179.97438 * 20 19 18 22 22 O 1.21425 * 120.00198 * 0.02562 * 21 20 19 23 23 O 1.34670 * 119.99871 * 180.02562 * 21 20 19 24 24 C 1.40055 * 118.22434 * 0.02562 * 20 19 18 25 25 C 1.37941 * 119.17518 * 359.97438 * 24 20 19 26 26 N 1.31924 * 121.00367 * 359.74371 * 25 24 20 27 27 C 1.37638 * 120.24839 * 0.02562 * 13 12 11 28 28 H 0.97000 * 119.99656 * 0.02562 * 1 2 3 29 29 H 1.07997 * 120.13169 * 0.02562 * 10 9 7 30 30 H 1.08002 * 119.87466 * 180.02562 * 11 10 9 31 31 H 1.08000 * 119.74967 * 180.02562 * 12 11 10 32 32 H 0.97002 * 119.99876 * 245.00478 * 17 14 13 33 33 H 1.07999 * 120.53623 * 0.02562 * 19 18 17 34 34 H 0.96697 * 116.99923 * 180.02562 * 23 21 20 35 35 H 1.08002 * 120.40907 * 180.02562 * 24 20 19 36 36 H 1.08001 * 119.49842 * 179.97438 * 25 24 20 37 37 H 1.07999 * 120.12666 * 180.27497 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 2.3755 2.1123 -1.3938 5 1 1.5016 2.6169 0.8112 6 1 3.5923 1.4098 0.5826 7 6 2.0080 -1.2119 0.0005 8 1 1.5088 -2.1236 0.2941 9 6 3.3684 -1.2430 -0.3833 10 6 3.8635 -0.3117 -1.3149 11 6 5.1892 -0.3516 -1.6815 12 6 6.0361 -1.3050 -1.1372 13 6 5.5593 -2.2272 -0.2187 14 16 6.6503 -3.4312 0.4632 15 8 7.9615 -2.8961 0.3470 16 8 6.0814 -3.8322 1.7021 17 7 6.5971 -4.7576 -0.5269 18 6 7.0606 -4.6679 -1.8345 19 6 7.0129 -5.7869 -2.6597 20 6 7.4817 -5.6800 -3.9697 21 6 7.4519 -6.8434 -4.8850 22 8 7.0150 -7.9086 -4.4990 23 8 7.9094 -6.7203 -6.1456 24 6 7.9821 -4.4430 -4.3952 25 6 7.9936 -3.3828 -3.5128 26 7 7.5373 -3.5177 -2.2824 27 6 4.2370 -2.2060 0.1626 28 1 -0.4849 0.8401 -0.0004 29 1 3.2056 0.4315 -1.7405 30 1 5.5715 0.3624 -2.3960 31 1 7.0752 -1.3287 -1.4303 32 1 6.2424 -5.5970 -0.1945 33 1 6.6187 -6.7230 -2.2927 34 1 7.8692 -7.5073 -6.7060 35 1 8.3535 -4.3206 -5.4019 36 1 8.3787 -2.4267 -3.8353 37 1 3.8686 -2.9226 0.8817 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608189390.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:12 Heat of formation + Delta-G solvation = -97.316234 kcal Electronic energy + Delta-G solvation = -27536.559210 eV Core-core repulsion = 23371.027407 eV Total energy + Delta-G solvation = -4165.531803 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.066 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.08269 -39.91907 -37.91366 -36.85342 -36.53202 -35.58823 -35.45783 -33.76318 -32.98501 -30.70014 -30.17535 -29.93202 -25.93500 -25.34135 -23.64760 -22.44300 -22.07616 -20.90608 -19.44955 -19.09312 -18.31626 -17.98106 -17.30154 -16.78341 -16.33050 -16.08009 -15.96713 -15.50029 -15.42997 -14.96868 -14.77650 -14.49183 -14.41270 -13.82912 -13.69564 -13.18388 -12.87450 -12.48752 -12.24485 -12.06891 -12.01880 -11.86682 -11.79631 -11.65910 -11.64146 -11.51280 -11.22919 -11.01449 -10.78816 -10.34367 -10.26763 -9.99816 -9.77198 -9.72923 -9.26070 -8.66714 -8.28550 -7.84495 -7.06634 -4.62068 0.25263 0.64454 0.90041 1.89238 2.21991 2.44634 2.45948 2.96584 3.00118 3.12296 3.21527 3.51485 3.86082 3.94014 4.06904 4.35039 4.40081 4.58231 4.65338 4.73930 4.91799 5.16623 5.29780 5.37855 5.62051 5.73056 5.82974 6.00510 6.11234 6.21783 6.23787 6.46428 6.53368 6.67903 6.87522 7.09188 7.23549 7.42010 7.42689 7.61921 7.63596 7.79189 8.19573 8.43755 8.63436 9.95685 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.013705 B = 0.003351 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.607227 B = 8352.535683 C = 9020.981475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.084 3.916 3 Si 0.905 3.095 4 H -0.269 1.269 5 H -0.286 1.286 6 H -0.243 1.243 7 C -0.448 4.448 8 H 0.094 0.906 9 C 0.071 3.929 10 C -0.190 4.190 11 C -0.102 4.102 12 C -0.126 4.126 13 C -0.619 4.619 14 S 2.682 3.318 15 O -0.941 6.941 16 O -0.960 6.960 17 N -1.035 6.035 18 C 0.391 3.609 19 C -0.143 4.143 20 C -0.051 4.051 21 C 0.532 3.468 22 O -0.504 6.504 23 O -0.507 6.507 24 C -0.157 4.157 25 C 0.148 3.852 26 N -0.486 5.486 27 C -0.109 4.109 28 H 0.287 0.713 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.126 0.874 32 H 0.433 0.567 33 H 0.153 0.847 34 H 0.418 0.582 35 H 0.153 0.847 36 H 0.174 0.826 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.869 -8.617 -10.685 19.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.135 4.135 3 Si 0.731 3.269 4 H -0.195 1.195 5 H -0.214 1.214 6 H -0.166 1.166 7 C -0.476 4.476 8 H 0.112 0.888 9 C 0.067 3.933 10 C -0.209 4.209 11 C -0.121 4.121 12 C -0.147 4.147 13 C -0.712 4.712 14 S 2.779 3.221 15 O -0.931 6.931 16 O -0.950 6.950 17 N -0.780 5.780 18 C 0.157 3.843 19 C -0.168 4.168 20 C -0.060 4.060 21 C 0.375 3.625 22 O -0.392 6.392 23 O -0.319 6.319 24 C -0.178 4.178 25 C -0.009 4.009 26 N -0.202 5.202 27 C -0.130 4.130 28 H 0.097 0.903 29 H 0.123 0.877 30 H 0.121 0.879 31 H 0.144 0.856 32 H 0.270 0.730 33 H 0.170 0.830 34 H 0.277 0.723 35 H 0.170 0.830 36 H 0.191 0.809 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 14.055 -7.586 -8.917 18.293 hybrid contribution -0.758 -0.571 -1.296 1.607 sum 13.298 -8.157 -10.213 18.646 Atomic orbital electron populations 1.69681 1.08040 1.30413 1.34571 1.26135 0.94760 1.01655 0.90983 0.86394 0.81544 0.79956 0.78980 1.19477 1.21356 1.16614 1.19476 0.92891 0.96402 1.38830 0.88815 1.17749 0.93229 0.91578 0.90716 1.21354 0.95777 1.02824 1.00975 1.20745 0.93864 0.98060 0.99477 1.20281 0.99216 0.96462 0.98788 1.29617 1.09662 1.17093 1.14843 1.02179 0.74662 0.72921 0.72360 1.93550 1.36549 1.77430 1.85558 1.93594 1.79854 1.82311 1.39250 1.53845 1.73000 1.30735 1.20398 1.17690 0.91691 0.89734 0.85143 1.21604 1.02729 0.99862 0.92604 1.19079 1.01691 0.92584 0.92693 1.20722 0.73709 0.87420 0.80655 1.90911 1.42718 1.29011 1.76525 1.84533 1.77449 1.45906 1.23969 1.22296 1.01053 0.92226 1.02255 1.22542 0.92882 0.99092 0.86403 1.67102 1.11801 1.23146 1.18116 1.20851 0.90596 1.01996 0.99578 0.90267 0.87688 0.87915 0.85569 0.73009 0.82969 0.72309 0.82963 0.80858 0.86406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.88 13.93 55.55 0.77 -20.11 16 2 C 0.08 2.15 5.40 -17.34 -0.09 2.06 16 3 Si 0.91 20.13 24.52 -169.99 -4.17 15.96 16 4 H -0.27 -5.71 6.71 56.52 0.38 -5.33 16 5 H -0.29 -6.16 7.11 56.52 0.40 -5.75 16 6 H -0.24 -5.57 6.86 56.52 0.39 -5.18 16 7 C -0.45 -11.78 9.57 -37.74 -0.36 -12.14 16 8 H 0.09 2.57 8.06 -52.48 -0.42 2.14 16 9 C 0.07 1.76 5.10 -106.83 -0.55 1.21 16 10 C -0.19 -4.37 7.18 -38.87 -0.28 -4.64 16 11 C -0.10 -2.09 10.02 -39.66 -0.40 -2.49 16 12 C -0.13 -2.52 8.40 -39.29 -0.33 -2.85 16 13 C -0.62 -12.71 5.76 -39.66 -0.23 -12.94 16 14 S 2.68 47.53 5.38 -107.50 -0.58 46.95 16 15 O -0.94 -18.14 16.14 -57.17 -0.92 -19.06 16 16 O -0.96 -18.82 17.26 -57.17 -0.99 -19.81 16 17 N -1.04 -14.05 5.85 31.11 0.18 -13.87 16 18 C 0.39 5.27 7.33 -155.08 -1.14 4.14 16 19 C -0.14 -1.62 9.51 -38.76 -0.37 -1.98 16 20 C -0.05 -0.52 5.90 -104.70 -0.62 -1.14 16 21 C 0.53 5.11 8.30 34.76 0.29 5.39 16 22 O -0.50 -6.18 17.23 -19.21 -0.33 -6.51 16 23 O -0.51 -3.15 12.78 -40.41 -0.52 -3.66 16 24 C -0.16 -1.38 9.70 -39.01 -0.38 -1.76 16 25 C 0.15 1.54 11.16 -17.62 -0.20 1.34 16 26 N -0.49 -6.84 6.21 -12.48 -0.08 -6.92 16 27 C -0.11 -2.48 9.26 -38.87 -0.36 -2.84 16 28 H 0.29 6.73 8.30 -40.82 -0.34 6.40 16 29 H 0.11 2.38 4.73 -52.49 -0.25 2.13 16 30 H 0.10 1.77 8.06 -52.49 -0.42 1.34 16 31 H 0.13 2.28 6.53 -52.49 -0.34 1.94 16 32 H 0.43 4.35 8.82 -34.47 -0.30 4.05 16 33 H 0.15 1.49 7.74 -52.49 -0.41 1.08 16 34 H 0.42 0.72 9.11 45.56 0.42 1.14 16 35 H 0.15 0.92 7.71 -52.49 -0.40 0.52 16 36 H 0.17 1.27 8.06 -52.49 -0.42 0.85 16 37 H 0.12 2.57 7.60 -52.49 -0.40 2.17 16 LS Contribution 337.29 15.07 5.08 5.08 Total: -1.00 -34.41 337.29 -8.68 -43.09 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -2.13 Total: 7.49 kcal Atomic # 6 Polarization: -23.64 SS G_CDS: -5.01 Total: -28.65 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: 0.88 Total: -40.90 kcal Atomic # 8 Polarization: -46.28 SS G_CDS: -2.76 Total: -49.04 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -4.17 Total: 15.96 kcal Atomic # 16 Polarization: 47.53 SS G_CDS: -0.58 Total: 46.95 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.41 -8.68 -43.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608189390.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.225 kcal (2) G-P(sol) polarization free energy of solvation -34.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds