Wall clock time and date at job start Wed Apr 1 2020 05:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86793 * 120.00244 * 2 1 4 4 H 1.48499 * 109.47072 * 275.41089 * 3 2 1 5 5 H 1.48503 * 109.46947 * 35.40890 * 3 2 1 6 6 H 1.48503 * 109.47306 * 155.40917 * 3 2 1 7 7 C 1.39943 * 119.99976 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00134 * 341.73392 * 7 2 1 9 9 C 1.41393 * 120.00104 * 161.73146 * 7 2 1 10 10 C 1.40728 * 120.24409 * 330.21879 * 9 7 2 11 11 C 1.37599 * 119.74473 * 180.02562 * 10 9 7 12 12 C 1.38653 * 120.24983 * 0.02562 * 11 10 9 13 13 C 1.38613 * 120.50114 * 359.97438 * 12 11 10 14 14 S 1.76200 * 119.87430 * 180.02562 * 13 12 11 15 15 O 1.42098 * 106.40573 * 23.51570 * 14 13 12 16 16 O 1.42102 * 106.40225 * 156.43875 * 14 13 12 17 17 N 1.65602 * 107.21861 * 269.97605 * 14 13 12 18 18 C 1.39020 * 119.99760 * 64.99799 * 17 14 13 19 19 C 1.39127 * 119.64336 * 179.97438 * 18 17 14 20 20 C 1.39545 * 118.92532 * 179.97438 * 19 18 17 21 21 C 1.48064 * 120.88498 * 179.97438 * 20 19 18 22 22 O 1.21425 * 120.00198 * 0.02562 * 21 20 19 23 23 O 1.34670 * 119.99871 * 180.02562 * 21 20 19 24 24 C 1.40055 * 118.22434 * 0.02562 * 20 19 18 25 25 C 1.37941 * 119.17518 * 359.97438 * 24 20 19 26 26 N 1.31924 * 121.00367 * 359.74371 * 25 24 20 27 27 C 1.37638 * 120.24839 * 0.02562 * 13 12 11 28 28 H 0.97000 * 119.99656 * 0.02562 * 1 2 3 29 29 H 1.07997 * 120.13169 * 0.02562 * 10 9 7 30 30 H 1.08002 * 119.87466 * 180.02562 * 11 10 9 31 31 H 1.08000 * 119.74967 * 180.02562 * 12 11 10 32 32 H 0.97002 * 119.99876 * 245.00478 * 17 14 13 33 33 H 1.07999 * 120.53623 * 0.02562 * 19 18 17 34 34 H 0.96697 * 116.99923 * 180.02562 * 23 21 20 35 35 H 1.08002 * 120.40907 * 180.02562 * 24 20 19 36 36 H 1.08001 * 119.49842 * 179.97438 * 25 24 20 37 37 H 1.07999 * 120.12666 * 180.27497 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 2.3755 2.1123 -1.3938 5 1 1.5016 2.6169 0.8112 6 1 3.5923 1.4098 0.5826 7 6 2.0080 -1.2119 0.0005 8 1 1.5088 -2.1236 0.2941 9 6 3.3684 -1.2430 -0.3833 10 6 3.8635 -0.3117 -1.3149 11 6 5.1892 -0.3516 -1.6815 12 6 6.0361 -1.3050 -1.1372 13 6 5.5593 -2.2272 -0.2187 14 16 6.6503 -3.4312 0.4632 15 8 7.9615 -2.8961 0.3470 16 8 6.0814 -3.8322 1.7021 17 7 6.5971 -4.7576 -0.5269 18 6 7.0606 -4.6679 -1.8345 19 6 7.0129 -5.7869 -2.6597 20 6 7.4817 -5.6800 -3.9697 21 6 7.4519 -6.8434 -4.8850 22 8 7.0150 -7.9086 -4.4990 23 8 7.9094 -6.7203 -6.1456 24 6 7.9821 -4.4430 -4.3952 25 6 7.9936 -3.3828 -3.5128 26 7 7.5373 -3.5177 -2.2824 27 6 4.2370 -2.2060 0.1626 28 1 -0.4849 0.8401 -0.0004 29 1 3.2056 0.4315 -1.7405 30 1 5.5715 0.3624 -2.3960 31 1 7.0752 -1.3287 -1.4303 32 1 6.2424 -5.5970 -0.1945 33 1 6.6187 -6.7230 -2.2927 34 1 7.8692 -7.5073 -6.7060 35 1 8.3535 -4.3206 -5.4019 36 1 8.3787 -2.4267 -3.8353 37 1 3.8686 -2.9226 0.8817 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608189390.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:11 Heat of formation + Delta-G solvation = -123.124416 kcal Electronic energy + Delta-G solvation = -27537.678337 eV Core-core repulsion = 23371.027407 eV Total energy + Delta-G solvation = -4166.650930 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.066 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.87816 -40.70005 -39.65663 -38.34714 -37.18019 -37.01197 -36.53234 -35.61304 -33.84083 -32.49557 -31.87961 -30.81828 -27.21793 -26.70400 -24.52763 -24.07303 -22.92907 -22.65598 -20.74287 -20.02931 -19.73922 -18.85061 -18.66228 -18.04123 -17.64431 -17.09911 -16.87033 -16.77963 -16.62302 -16.45046 -16.21813 -15.65104 -15.38225 -15.22557 -14.82424 -14.67030 -14.39025 -14.01888 -13.65293 -13.47225 -13.36725 -13.25307 -13.11098 -12.96751 -12.88539 -12.77252 -12.61293 -12.51878 -12.03610 -12.00071 -11.74078 -11.52140 -11.13883 -11.01291 -10.70683 -9.99388 -9.63821 -9.55554 -8.94889 -6.57417 -0.75183 -0.53870 0.06529 0.19436 0.69603 1.21284 1.36881 1.43858 1.46246 1.65772 1.91948 2.06247 2.40634 2.55604 2.76906 3.06826 3.34607 3.36605 3.69328 3.81287 3.90737 4.09243 4.21675 4.37613 4.49021 4.54513 4.66492 4.78582 4.83140 4.88660 4.98611 5.09043 5.35255 5.45080 5.49063 5.52546 5.64260 5.70914 5.77784 6.02374 6.26037 6.60638 6.71601 6.76797 6.88054 8.13819 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.013705 B = 0.003351 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.607227 B = 8352.535683 C = 9020.981475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.048 3.952 3 Si 0.956 3.044 4 H -0.247 1.247 5 H -0.275 1.275 6 H -0.255 1.255 7 C -0.488 4.488 8 H 0.058 0.942 9 C 0.051 3.949 10 C -0.196 4.196 11 C -0.103 4.103 12 C -0.106 4.106 13 C -0.630 4.630 14 S 2.715 3.285 15 O -0.952 6.952 16 O -0.983 6.983 17 N -1.026 6.026 18 C 0.362 3.638 19 C -0.143 4.143 20 C -0.062 4.062 21 C 0.541 3.459 22 O -0.537 6.537 23 O -0.493 6.493 24 C -0.131 4.131 25 C 0.139 3.861 26 N -0.519 5.519 27 C -0.129 4.129 28 H 0.295 0.705 29 H 0.108 0.892 30 H 0.146 0.854 31 H 0.153 0.847 32 H 0.447 0.553 33 H 0.160 0.840 34 H 0.439 0.561 35 H 0.187 0.813 36 H 0.206 0.794 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.070 -7.852 -13.476 23.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.167 4.167 3 Si 0.779 3.221 4 H -0.171 1.171 5 H -0.202 1.202 6 H -0.178 1.178 7 C -0.518 4.518 8 H 0.076 0.924 9 C 0.048 3.952 10 C -0.216 4.216 11 C -0.122 4.122 12 C -0.127 4.127 13 C -0.720 4.720 14 S 2.808 3.192 15 O -0.942 6.942 16 O -0.974 6.974 17 N -0.776 5.776 18 C 0.130 3.870 19 C -0.169 4.169 20 C -0.072 4.072 21 C 0.385 3.615 22 O -0.428 6.428 23 O -0.307 6.307 24 C -0.152 4.152 25 C -0.018 4.018 26 N -0.236 5.236 27 C -0.150 4.150 28 H 0.106 0.894 29 H 0.126 0.874 30 H 0.164 0.836 31 H 0.170 0.830 32 H 0.286 0.714 33 H 0.177 0.823 34 H 0.302 0.698 35 H 0.204 0.796 36 H 0.223 0.777 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 17.242 -6.819 -11.753 21.952 hybrid contribution -1.459 -0.990 -0.641 1.876 sum 15.782 -7.809 -12.394 21.533 Atomic orbital electron populations 1.69710 1.09129 1.31584 1.36788 1.26796 0.95369 1.04081 0.90425 0.85623 0.79664 0.76687 0.80127 1.17134 1.20155 1.17840 1.19448 0.94323 0.95932 1.42083 0.92384 1.17896 0.92791 0.92962 0.91550 1.21542 0.97191 1.02330 1.00521 1.21214 0.92666 0.98618 0.99669 1.20764 1.00324 0.94813 0.96767 1.30114 1.09139 1.18287 1.14445 1.01165 0.73542 0.72687 0.71759 1.93528 1.36534 1.78299 1.85853 1.93561 1.80147 1.82641 1.41033 1.53332 1.73541 1.30027 1.20748 1.17809 0.93515 0.90686 0.84984 1.21658 1.02635 0.99544 0.93033 1.19295 1.01743 0.93667 0.92497 1.20561 0.73053 0.86537 0.81357 1.90911 1.44385 1.30135 1.77344 1.84476 1.76341 1.47254 1.22646 1.22662 0.98427 0.90809 1.03268 1.23177 0.92295 1.00893 0.85408 1.67028 1.12842 1.23706 1.20014 1.20889 0.91725 1.02104 1.00248 0.89436 0.87394 0.83623 0.82953 0.71361 0.82278 0.69826 0.79559 0.77701 0.87023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -45.92 13.93 21.83 0.30 -45.62 16 2 C 0.05 2.55 5.40 85.26 0.46 3.01 16 3 Si 0.96 41.44 24.52 68.60 1.68 43.12 16 4 H -0.25 -9.71 6.71 99.48 0.67 -9.05 16 5 H -0.28 -11.28 7.11 99.48 0.71 -10.57 16 6 H -0.25 -11.37 6.86 99.48 0.68 -10.69 16 7 C -0.49 -27.28 9.57 23.46 0.22 -27.06 16 8 H 0.06 3.49 8.06 -2.91 -0.02 3.47 16 9 C 0.05 2.60 5.10 -21.29 -0.11 2.49 16 10 C -0.20 -8.82 7.18 22.73 0.16 -8.66 16 11 C -0.10 -3.87 10.02 22.22 0.22 -3.65 16 12 C -0.11 -3.94 8.40 22.46 0.19 -3.75 16 13 C -0.63 -25.34 5.76 22.22 0.13 -25.21 16 14 S 2.71 94.18 5.38 -56.49 -0.30 93.88 16 15 O -0.95 -35.06 16.14 -128.00 -2.07 -37.13 16 16 O -0.98 -38.81 17.26 -128.00 -2.21 -41.02 16 17 N -1.03 -27.09 5.85 -55.47 -0.32 -27.41 16 18 C 0.36 9.16 7.33 133.08 0.98 10.14 16 19 C -0.14 -3.02 9.51 22.80 0.22 -2.80 16 20 C -0.06 -1.11 5.90 -19.91 -0.12 -1.22 16 21 C 0.54 8.93 8.30 70.43 0.58 9.51 16 22 O -0.54 -12.33 17.23 20.08 0.35 -11.98 16 23 O -0.49 -4.25 12.78 -55.80 -0.71 -4.96 16 24 C -0.13 -1.75 9.70 22.64 0.22 -1.53 16 25 C 0.14 2.34 11.16 84.61 0.94 3.28 16 26 N -0.52 -13.18 6.21 -193.41 -1.20 -14.39 16 27 C -0.13 -6.02 9.26 22.73 0.21 -5.81 16 28 H 0.30 14.32 8.30 -92.71 -0.77 13.55 16 29 H 0.11 4.73 4.73 -2.91 -0.01 4.72 16 30 H 0.15 4.23 8.06 -2.91 -0.02 4.21 16 31 H 0.15 4.89 6.53 -2.91 -0.02 4.87 16 32 H 0.45 8.85 8.82 -96.74 -0.85 8.00 16 33 H 0.16 2.98 7.74 -2.91 -0.02 2.96 16 34 H 0.44 -0.07 9.11 -74.06 -0.67 -0.74 16 35 H 0.19 1.19 7.71 -2.91 -0.02 1.17 16 36 H 0.21 1.94 8.06 -2.91 -0.02 1.91 16 37 H 0.11 5.19 7.60 -2.91 -0.02 5.17 16 Total: -1.00 -77.21 337.29 -0.59 -77.79 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: -0.41 Total: 18.98 kcal Atomic # 6 Polarization: -55.57 SS G_CDS: 4.31 Total: -51.25 kcal Atomic # 7 Polarization: -86.20 SS G_CDS: -1.22 Total: -87.42 kcal Atomic # 8 Polarization: -90.45 SS G_CDS: -4.64 Total: -95.09 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 1.68 Total: 43.12 kcal Atomic # 16 Polarization: 94.18 SS G_CDS: -0.30 Total: 93.88 kcal Total: -77.21 -0.59 -77.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608189390.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.331 kcal (2) G-P(sol) polarization free energy of solvation -77.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds