Wall clock time and date at job start Wed Apr 1 2020 04:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86797 * 120.00072 * 2 1 4 4 H 1.48504 * 109.47234 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47475 * 300.00003 * 3 2 1 6 6 H 1.48498 * 109.47285 * 60.00361 * 3 2 1 7 7 C 1.39887 * 119.99987 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00179 * 190.70223 * 7 2 1 9 9 C 1.41219 * 120.00065 * 10.69865 * 7 2 1 10 10 C 1.40834 * 120.17405 * 29.37805 * 9 7 2 11 11 C 1.36438 * 119.80726 * 180.02562 * 10 9 7 12 12 C 1.39308 * 120.18837 * 359.97438 * 11 10 9 13 13 O 1.35672 * 119.82249 * 179.97438 * 12 11 10 14 14 S 1.52205 * 113.99841 * 93.71986 * 13 12 11 15 15 O 1.42094 * 106.40435 * 171.33252 * 14 13 12 16 16 O 1.42096 * 106.40353 * 38.40812 * 14 13 12 17 17 C 1.76205 * 107.21816 * 284.86839 * 14 13 12 18 18 C 1.37968 * 120.07490 * 124.23572 * 17 14 13 19 19 C 1.38341 * 120.15028 * 180.29571 * 18 17 14 20 20 C 1.38390 * 120.30175 * 359.45469 * 19 18 17 21 21 C 1.37917 * 120.15046 * 0.55217 * 20 19 18 22 22 C 1.39602 * 120.07922 * 304.26901 * 17 14 13 23 23 C 1.47731 * 120.14717 * 359.94628 * 22 17 14 24 24 O 1.21464 * 120.00137 * 4.04130 * 23 22 17 25 25 O 1.34711 * 119.99660 * 184.03066 * 23 22 17 26 26 C 1.39319 * 120.36049 * 0.26220 * 12 11 10 27 27 C 1.36433 * 120.18527 * 359.47770 * 26 12 11 28 28 H 0.97004 * 119.99410 * 359.97438 * 1 2 3 29 29 H 1.08000 * 120.09598 * 359.97438 * 10 9 7 30 30 H 1.08001 * 119.90656 * 179.97438 * 11 10 9 31 31 H 1.08006 * 119.92545 * 0.03316 * 18 17 14 32 32 H 1.08000 * 119.85165 * 179.72732 * 19 18 17 33 33 H 1.08000 * 119.92638 * 180.29596 * 20 19 18 34 34 H 1.08005 * 120.07613 * 179.74671 * 21 20 19 35 35 H 0.96701 * 116.99685 * 180.02562 * 25 23 22 36 36 H 1.08003 * 119.90161 * 179.71781 * 26 12 11 37 37 H 1.07999 * 120.09483 * 180.25601 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.7028 1.3463 -0.0006 5 1 1.8841 2.3965 -1.2125 6 1 1.8842 2.3964 1.2125 7 6 2.0082 -1.2115 -0.0005 8 1 3.0741 -1.2197 0.1731 9 6 1.3206 -2.4237 -0.2281 10 6 0.1611 -2.4406 -1.0273 11 6 -0.4978 -3.6159 -1.2418 12 6 -0.0263 -4.7971 -0.6734 13 8 -0.6875 -5.9616 -0.8912 14 16 -0.1510 -6.7679 -2.0653 15 8 -0.8102 -8.0260 -2.0228 16 8 1.2629 -6.6298 -2.0343 17 6 -0.6966 -5.9701 -3.5386 18 6 0.2203 -5.5724 -4.4897 19 6 -0.2058 -4.9404 -5.6442 20 6 -1.5538 -4.7127 -5.8587 21 6 -2.4812 -5.1049 -4.9162 22 6 -2.0575 -5.7382 -3.7459 23 6 -3.0451 -6.1617 -2.7321 24 8 -2.6695 -6.6461 -1.6835 25 8 -4.3623 -6.0104 -2.9707 26 6 1.1172 -4.7882 0.1225 27 6 1.7907 -3.6223 0.3425 28 1 -0.4849 0.8401 0.0004 29 1 -0.2060 -1.5256 -1.4684 30 1 -1.3874 -3.6306 -1.8541 31 1 1.2736 -5.7511 -4.3307 32 1 0.5166 -4.6271 -6.3835 33 1 -1.8801 -4.2230 -6.7643 34 1 -3.5326 -4.9229 -5.0830 35 1 -4.9703 -6.3017 -2.2774 36 1 1.4736 -5.7075 0.5632 37 1 2.6793 -3.6177 0.9563 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608189660.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:40 Heat of formation + Delta-G solvation = -139.456714 kcal Electronic energy + Delta-G solvation = -28866.454245 eV Core-core repulsion = 24666.802342 eV Total energy + Delta-G solvation = -4199.651903 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.059 amu Computer time = 35.25 seconds Orbital eigenvalues (eV) -40.57047 -39.66941 -38.73157 -36.94418 -36.70970 -35.92294 -35.25715 -33.69308 -31.67568 -31.40461 -29.92909 -29.43722 -25.42994 -24.99731 -23.29407 -21.92452 -21.54505 -21.34646 -19.52522 -18.48588 -18.03844 -17.61690 -17.49814 -16.68034 -16.47268 -15.73679 -15.67331 -15.34564 -15.18577 -14.56282 -14.29293 -14.18201 -13.97262 -13.32837 -13.06616 -12.99832 -12.52525 -12.42613 -12.12599 -12.04038 -12.01305 -11.78839 -11.62245 -11.45474 -11.42982 -11.29770 -11.23138 -10.98333 -10.76672 -10.56383 -10.41625 -10.07016 -9.59747 -9.51403 -9.43906 -9.22899 -7.88370 -7.54375 -7.04725 -4.67601 0.29232 0.91660 1.04812 2.42105 2.45418 2.82565 2.84101 2.92964 2.94379 2.98454 3.28657 3.49501 3.71755 4.18029 4.32179 4.51549 4.69853 4.79589 5.02125 5.21547 5.29940 5.38909 5.41038 5.68299 5.84770 5.93242 5.94112 6.07105 6.12394 6.27678 6.42700 6.58137 6.70166 6.75823 6.89695 6.97584 7.28917 7.58467 7.66560 7.74952 7.76122 7.93500 8.29481 8.54331 8.61395 9.87894 Molecular weight = 348.06amu Principal moments of inertia in cm(-1) A = 0.013490 B = 0.004075 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.172139 B = 6869.995860 C = 7416.453867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.070 3.930 3 Si 0.918 3.082 4 H -0.257 1.257 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.437 4.437 8 H 0.088 0.912 9 C 0.122 3.878 10 C -0.151 4.151 11 C -0.086 4.086 12 C -0.098 4.098 13 O -0.609 6.609 14 S 2.658 3.342 15 O -0.949 6.949 16 O -0.970 6.970 17 C -0.627 4.627 18 C -0.025 4.025 19 C -0.104 4.104 20 C -0.087 4.087 21 C -0.082 4.082 22 C -0.036 4.036 23 C 0.503 3.497 24 O -0.463 6.463 25 O -0.507 6.507 26 C -0.049 4.049 27 C -0.212 4.212 28 H 0.286 0.714 29 H 0.129 0.871 30 H 0.095 0.905 31 H 0.153 0.847 32 H 0.139 0.861 33 H 0.137 0.863 34 H 0.145 0.855 35 H 0.419 0.581 36 H 0.105 0.895 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.905 -3.338 -10.421 11.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.150 4.150 3 Si 0.742 3.258 4 H -0.181 1.181 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.466 4.466 8 H 0.106 0.894 9 C 0.118 3.882 10 C -0.171 4.171 11 C -0.107 4.107 12 C -0.143 4.143 13 O -0.569 6.569 14 S 2.750 3.250 15 O -0.948 6.948 16 O -0.969 6.969 17 C -0.707 4.707 18 C -0.044 4.044 19 C -0.123 4.123 20 C -0.105 4.105 21 C -0.101 4.101 22 C -0.038 4.038 23 C 0.344 3.656 24 O -0.350 6.350 25 O -0.319 6.319 26 C -0.070 4.070 27 C -0.232 4.232 28 H 0.097 0.903 29 H 0.147 0.853 30 H 0.113 0.887 31 H 0.170 0.830 32 H 0.157 0.843 33 H 0.155 0.845 34 H 0.162 0.838 35 H 0.278 0.722 36 H 0.123 0.877 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -4.664 -3.795 -10.009 11.676 hybrid contribution -0.597 0.900 -0.226 1.103 sum -5.261 -2.895 -10.234 11.866 Atomic orbital electron populations 1.69812 1.07685 1.29873 1.33277 1.26067 0.94966 1.01892 0.92065 0.86082 0.80881 0.80026 0.78824 1.18078 1.19492 1.19653 1.19819 0.96497 0.90307 1.39957 0.89432 1.17832 0.90992 0.92356 0.87013 1.20977 0.98483 0.96045 1.01553 1.20433 0.98466 0.92109 0.99698 1.17715 0.99698 0.80808 1.16057 1.85864 1.68333 1.41441 1.61237 1.03998 0.72932 0.74718 0.73317 1.93531 1.75740 1.40192 1.85291 1.93549 1.31993 1.86163 1.85185 1.31744 0.99662 1.15390 1.23897 1.21014 0.99782 0.92158 0.91451 1.21593 0.96311 0.96967 0.97398 1.21415 0.93168 0.97120 0.98844 1.21530 1.00898 0.95564 0.92105 1.18543 0.90028 1.00616 0.94640 1.20979 0.82300 0.76197 0.86076 1.91042 1.79421 1.38903 1.25604 1.84460 1.17050 1.79147 1.51259 1.20418 0.92836 0.98123 0.95622 1.20681 1.03168 0.92635 1.06720 0.90305 0.85298 0.88710 0.82951 0.84343 0.84471 0.83767 0.72193 0.87720 0.87361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.41 10.87 55.54 0.60 -17.80 16 2 C 0.07 1.58 5.25 -17.34 -0.09 1.49 16 3 Si 0.92 16.88 29.57 -169.99 -5.03 11.85 16 4 H -0.26 -4.68 7.11 56.52 0.40 -4.28 16 5 H -0.27 -4.88 7.11 56.52 0.40 -4.47 16 6 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 7 C -0.44 -10.51 9.05 -37.83 -0.34 -10.85 16 8 H 0.09 2.00 7.87 -52.49 -0.41 1.58 16 9 C 0.12 3.03 5.54 -106.80 -0.59 2.44 16 10 C -0.15 -3.65 8.60 -39.25 -0.34 -3.99 16 11 C -0.09 -1.99 9.48 -39.83 -0.38 -2.37 16 12 C -0.10 -2.30 4.88 -38.78 -0.19 -2.49 16 13 O -0.61 -13.85 7.59 -54.48 -0.41 -14.27 16 14 S 2.66 56.09 4.60 -107.50 -0.49 55.59 16 15 O -0.95 -21.61 15.92 -70.60 -1.12 -22.74 16 16 O -0.97 -21.41 15.18 -66.81 -1.01 -22.43 16 17 C -0.63 -11.04 5.35 -39.17 -0.21 -11.25 16 18 C -0.03 -0.38 9.53 -39.64 -0.38 -0.76 16 19 C -0.10 -1.19 10.04 -39.49 -0.40 -1.59 16 20 C -0.09 -0.91 10.03 -39.64 -0.40 -1.31 16 21 C -0.08 -1.00 9.62 -39.17 -0.38 -1.38 16 22 C -0.04 -0.58 5.87 -104.98 -0.62 -1.20 16 23 C 0.50 8.21 8.18 34.61 0.28 8.50 16 24 O -0.46 -9.23 11.33 -30.56 -0.35 -9.57 16 25 O -0.51 -5.87 12.69 -40.52 -0.51 -6.38 16 26 C -0.05 -1.15 8.89 -39.83 -0.35 -1.50 16 27 C -0.21 -5.00 9.74 -39.25 -0.38 -5.38 16 28 H 0.29 6.05 8.30 -40.82 -0.34 5.71 16 29 H 0.13 3.14 6.26 -52.49 -0.33 2.82 16 30 H 0.09 2.00 8.06 -52.49 -0.42 1.57 16 31 H 0.15 2.14 7.39 -52.48 -0.39 1.75 16 32 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 33 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 34 H 0.14 1.38 7.62 -52.48 -0.40 0.98 16 35 H 0.42 2.96 9.11 45.56 0.42 3.37 16 36 H 0.10 2.25 8.06 -52.48 -0.42 1.83 16 37 H 0.11 2.32 8.06 -52.49 -0.42 1.90 16 LS Contribution 335.94 15.07 5.06 5.06 Total: -1.00 -32.51 335.94 -10.39 -42.90 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -2.36 Total: 9.40 kcal Atomic # 6 Polarization: -26.87 SS G_CDS: -4.76 Total: -31.62 kcal Atomic # 7 Polarization: -18.41 SS G_CDS: 0.60 Total: -17.80 kcal Atomic # 8 Polarization: -71.98 SS G_CDS: -3.41 Total: -75.39 kcal Atomic # 14 Polarization: 16.88 SS G_CDS: -5.03 Total: 11.85 kcal Atomic # 16 Polarization: 56.09 SS G_CDS: -0.49 Total: 55.59 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.51 -10.39 -42.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608189660.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.556 kcal (2) G-P(sol) polarization free energy of solvation -32.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 35.25 seconds