Wall clock time and date at job start Wed Apr 1 2020 04:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86797 * 120.00072 * 2 1 4 4 H 1.48504 * 109.47234 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47475 * 300.00003 * 3 2 1 6 6 H 1.48498 * 109.47285 * 60.00361 * 3 2 1 7 7 C 1.39887 * 119.99987 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00179 * 190.70223 * 7 2 1 9 9 C 1.41219 * 120.00065 * 10.69865 * 7 2 1 10 10 C 1.40834 * 120.17405 * 29.37805 * 9 7 2 11 11 C 1.36438 * 119.80726 * 180.02562 * 10 9 7 12 12 C 1.39308 * 120.18837 * 359.97438 * 11 10 9 13 13 O 1.35672 * 119.82249 * 179.97438 * 12 11 10 14 14 S 1.52205 * 113.99841 * 93.71986 * 13 12 11 15 15 O 1.42094 * 106.40435 * 171.33252 * 14 13 12 16 16 O 1.42096 * 106.40353 * 38.40812 * 14 13 12 17 17 C 1.76205 * 107.21816 * 284.86839 * 14 13 12 18 18 C 1.37968 * 120.07490 * 124.23572 * 17 14 13 19 19 C 1.38341 * 120.15028 * 180.29571 * 18 17 14 20 20 C 1.38390 * 120.30175 * 359.45469 * 19 18 17 21 21 C 1.37917 * 120.15046 * 0.55217 * 20 19 18 22 22 C 1.39602 * 120.07922 * 304.26901 * 17 14 13 23 23 C 1.47731 * 120.14717 * 359.94628 * 22 17 14 24 24 O 1.21464 * 120.00137 * 4.04130 * 23 22 17 25 25 O 1.34711 * 119.99660 * 184.03066 * 23 22 17 26 26 C 1.39319 * 120.36049 * 0.26220 * 12 11 10 27 27 C 1.36433 * 120.18527 * 359.47770 * 26 12 11 28 28 H 0.97004 * 119.99410 * 359.97438 * 1 2 3 29 29 H 1.08000 * 120.09598 * 359.97438 * 10 9 7 30 30 H 1.08001 * 119.90656 * 179.97438 * 11 10 9 31 31 H 1.08006 * 119.92545 * 0.03316 * 18 17 14 32 32 H 1.08000 * 119.85165 * 179.72732 * 19 18 17 33 33 H 1.08000 * 119.92638 * 180.29596 * 20 19 18 34 34 H 1.08005 * 120.07613 * 179.74671 * 21 20 19 35 35 H 0.96701 * 116.99685 * 180.02562 * 25 23 22 36 36 H 1.08003 * 119.90161 * 179.71781 * 26 12 11 37 37 H 1.07999 * 120.09483 * 180.25601 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.7028 1.3463 -0.0006 5 1 1.8841 2.3965 -1.2125 6 1 1.8842 2.3964 1.2125 7 6 2.0082 -1.2115 -0.0005 8 1 3.0741 -1.2197 0.1731 9 6 1.3206 -2.4237 -0.2281 10 6 0.1611 -2.4406 -1.0273 11 6 -0.4978 -3.6159 -1.2418 12 6 -0.0263 -4.7971 -0.6734 13 8 -0.6875 -5.9616 -0.8912 14 16 -0.1510 -6.7679 -2.0653 15 8 -0.8102 -8.0260 -2.0228 16 8 1.2629 -6.6298 -2.0343 17 6 -0.6966 -5.9701 -3.5386 18 6 0.2203 -5.5724 -4.4897 19 6 -0.2058 -4.9404 -5.6442 20 6 -1.5538 -4.7127 -5.8587 21 6 -2.4812 -5.1049 -4.9162 22 6 -2.0575 -5.7382 -3.7459 23 6 -3.0451 -6.1617 -2.7321 24 8 -2.6695 -6.6461 -1.6835 25 8 -4.3623 -6.0104 -2.9707 26 6 1.1172 -4.7882 0.1225 27 6 1.7907 -3.6223 0.3425 28 1 -0.4849 0.8401 0.0004 29 1 -0.2060 -1.5256 -1.4684 30 1 -1.3874 -3.6306 -1.8541 31 1 1.2736 -5.7511 -4.3307 32 1 0.5166 -4.6271 -6.3835 33 1 -1.8801 -4.2230 -6.7643 34 1 -3.5326 -4.9229 -5.0830 35 1 -4.9703 -6.3017 -2.2774 36 1 1.4736 -5.7075 0.5632 37 1 2.6793 -3.6177 0.9563 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608189660.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:36 Heat of formation + Delta-G solvation = -160.514648 kcal Electronic energy + Delta-G solvation = -28867.367385 eV Core-core repulsion = 24666.802342 eV Total energy + Delta-G solvation = -4200.565043 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.059 amu Computer time = 2.28 seconds Orbital eigenvalues (eV) -41.75720 -41.40034 -39.78934 -38.71855 -38.26383 -37.19465 -36.95849 -35.45227 -32.72747 -32.46704 -31.73533 -31.25259 -27.22247 -26.10229 -24.40561 -23.65825 -23.12436 -22.69340 -21.19191 -19.75684 -19.40754 -19.24041 -18.98571 -18.30153 -17.87140 -17.31408 -16.94787 -16.59510 -16.37543 -15.89060 -15.87307 -15.60964 -15.45330 -14.70924 -14.42083 -14.26826 -14.11455 -13.93837 -13.75924 -13.72073 -13.49017 -13.20320 -13.18361 -13.10682 -12.81647 -12.77890 -12.65229 -12.55977 -12.32423 -12.00596 -11.73825 -11.71479 -11.34807 -11.15455 -10.56085 -10.26447 -9.72558 -9.38564 -8.75827 -6.50693 -0.85228 -0.55599 -0.06014 0.66882 0.98437 1.32176 1.43387 1.47674 1.58883 1.66243 1.78206 2.19129 2.40990 2.57372 2.65513 3.36480 3.48672 3.64928 3.85913 3.91211 4.12487 4.14687 4.25079 4.29761 4.39564 4.55432 4.74088 4.84815 4.89366 4.97063 5.05033 5.09139 5.18729 5.19516 5.39524 5.47144 5.66321 5.75625 5.82251 5.93320 6.11622 6.47640 6.72216 6.74034 6.78961 8.20079 Molecular weight = 348.06amu Principal moments of inertia in cm(-1) A = 0.013490 B = 0.004075 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.172139 B = 6869.995860 C = 7416.453867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.034 3.966 3 Si 0.992 3.008 4 H -0.255 1.255 5 H -0.261 1.261 6 H -0.267 1.267 7 C -0.463 4.463 8 H 0.092 0.908 9 C 0.096 3.904 10 C -0.164 4.164 11 C -0.082 4.082 12 C -0.106 4.106 13 O -0.623 6.623 14 S 2.668 3.332 15 O -0.977 6.977 16 O -0.993 6.993 17 C -0.652 4.652 18 C -0.043 4.043 19 C -0.095 4.095 20 C -0.068 4.068 21 C -0.072 4.072 22 C -0.066 4.066 23 C 0.501 3.499 24 O -0.512 6.512 25 O -0.487 6.487 26 C -0.065 4.065 27 C -0.222 4.222 28 H 0.296 0.704 29 H 0.125 0.875 30 H 0.110 0.890 31 H 0.150 0.850 32 H 0.179 0.821 33 H 0.189 0.811 34 H 0.175 0.825 35 H 0.438 0.562 36 H 0.114 0.886 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.601 -1.197 -13.314 14.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.183 4.183 3 Si 0.812 3.188 4 H -0.178 1.178 5 H -0.185 1.185 6 H -0.192 1.192 7 C -0.491 4.491 8 H 0.110 0.890 9 C 0.093 3.907 10 C -0.184 4.184 11 C -0.103 4.103 12 C -0.150 4.150 13 O -0.583 6.583 14 S 2.765 3.235 15 O -0.975 6.975 16 O -0.991 6.991 17 C -0.738 4.738 18 C -0.062 4.062 19 C -0.113 4.113 20 C -0.086 4.086 21 C -0.091 4.091 22 C -0.068 4.068 23 C 0.345 3.655 24 O -0.403 6.403 25 O -0.301 6.301 26 C -0.085 4.085 27 C -0.242 4.242 28 H 0.107 0.893 29 H 0.143 0.857 30 H 0.128 0.872 31 H 0.167 0.833 32 H 0.197 0.803 33 H 0.206 0.794 34 H 0.193 0.807 35 H 0.301 0.699 36 H 0.132 0.868 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.371 -1.675 -12.841 14.020 hybrid contribution -0.533 0.185 0.493 0.749 sum -5.904 -1.490 -12.348 13.768 Atomic orbital electron populations 1.69845 1.09104 1.31427 1.33128 1.26919 0.95653 1.04876 0.90894 0.84985 0.79399 0.75308 0.79081 1.17791 1.18514 1.19184 1.20091 0.96923 0.90987 1.41099 0.88964 1.18167 0.91694 0.93207 0.87671 1.20969 0.99009 0.96163 1.02225 1.20523 0.98717 0.91581 0.99487 1.17838 0.99684 0.81392 1.16104 1.85798 1.68395 1.41195 1.62889 1.02957 0.72267 0.74238 0.74016 1.93485 1.76042 1.41814 1.86208 1.93516 1.33089 1.86496 1.86025 1.31024 1.01372 1.18440 1.22933 1.21251 0.99395 0.92976 0.92564 1.22092 0.98018 0.94849 0.96350 1.22063 0.92147 0.94780 0.99580 1.21982 1.02977 0.93582 0.90558 1.18735 0.89170 1.02534 0.96350 1.21280 0.83605 0.75111 0.85497 1.91016 1.80241 1.41446 1.27596 1.84410 1.15452 1.78356 1.51841 1.20657 0.93239 0.98632 0.96017 1.20884 1.03808 0.92489 1.07039 0.89308 0.85718 0.87184 0.83282 0.80330 0.79361 0.80748 0.69946 0.86769 0.85985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.07 10.87 21.82 0.24 -37.83 16 2 C 0.03 1.52 5.25 85.23 0.45 1.97 16 3 Si 0.99 33.65 29.57 68.60 2.03 35.68 16 4 H -0.25 -8.44 7.11 99.48 0.71 -7.74 16 5 H -0.26 -8.41 7.11 99.48 0.71 -7.70 16 6 H -0.27 -8.82 7.11 99.48 0.71 -8.12 16 7 C -0.46 -22.50 9.05 23.40 0.21 -22.29 16 8 H 0.09 4.24 7.87 -2.91 -0.02 4.22 16 9 C 0.10 4.91 5.54 -21.28 -0.12 4.80 16 10 C -0.16 -8.13 8.60 22.48 0.19 -7.94 16 11 C -0.08 -3.90 9.48 22.11 0.21 -3.69 16 12 C -0.11 -5.17 4.88 22.79 0.11 -5.06 16 13 O -0.62 -29.70 7.59 -55.70 -0.42 -30.12 16 14 S 2.67 117.64 4.60 -56.49 -0.26 117.38 16 15 O -0.98 -46.81 15.92 -115.16 -1.83 -48.65 16 16 O -0.99 -45.96 15.18 -118.78 -1.80 -47.76 16 17 C -0.65 -22.98 5.35 22.54 0.12 -22.86 16 18 C -0.04 -1.23 9.53 22.23 0.21 -1.02 16 19 C -0.09 -1.79 10.04 22.33 0.22 -1.56 16 20 C -0.07 -1.06 10.03 22.23 0.22 -0.83 16 21 C -0.07 -1.49 9.62 22.53 0.22 -1.27 16 22 C -0.07 -2.02 5.87 -20.10 -0.12 -2.14 16 23 C 0.50 16.28 8.18 70.33 0.57 16.85 16 24 O -0.51 -21.16 11.33 30.78 0.35 -20.82 16 25 O -0.49 -10.45 12.69 -56.21 -0.71 -11.17 16 26 C -0.06 -3.16 8.89 22.11 0.20 -2.97 16 27 C -0.22 -10.84 9.74 22.48 0.22 -10.62 16 28 H 0.30 12.34 8.30 -92.71 -0.77 11.57 16 29 H 0.13 6.20 6.26 -2.91 -0.02 6.18 16 30 H 0.11 4.71 8.06 -2.91 -0.02 4.69 16 31 H 0.15 4.21 7.39 -2.91 -0.02 4.19 16 32 H 0.18 1.91 8.06 -2.91 -0.02 1.89 16 33 H 0.19 1.09 8.06 -2.91 -0.02 1.06 16 34 H 0.18 2.47 7.62 -2.91 -0.02 2.44 16 35 H 0.44 5.58 9.11 -74.06 -0.67 4.90 16 36 H 0.11 5.16 8.06 -2.91 -0.02 5.14 16 37 H 0.12 5.40 8.06 -2.91 -0.02 5.37 16 Total: -1.00 -74.78 335.94 0.98 -73.80 By element: Atomic # 1 Polarization: 27.63 SS G_CDS: 0.47 Total: 28.10 kcal Atomic # 6 Polarization: -61.55 SS G_CDS: 2.92 Total: -58.62 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.24 Total: -37.83 kcal Atomic # 8 Polarization: -154.09 SS G_CDS: -4.42 Total: -158.51 kcal Atomic # 14 Polarization: 33.65 SS G_CDS: 2.03 Total: 35.68 kcal Atomic # 16 Polarization: 117.64 SS G_CDS: -0.26 Total: 117.38 kcal Total: -74.78 0.98 -73.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608189660.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.716 kcal (2) G-P(sol) polarization free energy of solvation -74.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.28 seconds