Wall clock time and date at job start Wed Apr 1 2020 05:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47168 * 2 1 4 4 C 1.52995 * 109.47332 * 239.99609 * 2 1 3 5 5 C 1.50703 * 109.47159 * 60.00011 * 4 2 1 6 6 H 1.07997 * 119.99558 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00067 * 180.02562 * 5 4 2 8 8 N 1.31512 * 119.99974 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99760 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47458 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47070 * 119.99947 * 9 7 5 12 12 H 1.48495 * 109.47390 * 239.99983 * 9 7 5 13 13 C 1.53001 * 109.46976 * 119.99664 * 2 1 3 14 14 N 1.46503 * 109.47393 * 299.99910 * 13 2 1 15 15 S 1.65599 * 120.00153 * 164.55267 * 14 13 2 16 16 O 1.42101 * 106.40018 * 311.73460 * 15 14 13 17 17 O 1.42103 * 106.40301 * 178.81231 * 15 14 13 18 18 C 1.76200 * 107.21892 * 65.27467 * 15 14 13 19 19 C 1.34976 * 124.16068 * 243.63055 * 18 15 14 20 20 S 1.71755 * 105.46874 * 180.21211 * 19 18 15 21 21 N 1.56148 * 97.28217 * 359.74288 * 20 19 18 22 22 C 1.30652 * 109.79243 * 359.97438 * 21 20 19 23 23 C 1.47562 * 122.11291 * 180.02562 * 22 21 20 24 24 O 1.21499 * 120.00019 * 174.80437 * 23 22 21 25 25 O 1.34737 * 120.00198 * 354.53064 * 23 22 21 26 26 H 1.09004 * 109.47215 * 300.00028 * 1 2 3 27 27 H 1.08998 * 109.47425 * 60.00076 * 1 2 3 28 28 H 1.09000 * 109.47111 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47068 * 180.02562 * 3 2 1 30 30 H 1.09007 * 109.47000 * 299.99678 * 3 2 1 31 31 H 1.09003 * 109.47587 * 59.99761 * 3 2 1 32 32 H 1.09001 * 109.47424 * 180.02562 * 4 2 1 33 33 H 1.09000 * 109.46964 * 300.00018 * 4 2 1 34 34 H 0.96995 * 120.00144 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.46984 * 179.97438 * 13 2 1 36 36 H 1.09000 * 109.47304 * 59.99992 * 13 2 1 37 37 H 0.96996 * 119.99956 * 344.55542 * 14 13 2 38 38 H 1.08004 * 127.26479 * 359.95525 * 19 18 15 39 39 H 0.96696 * 117.00231 * 180.27700 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5377 -0.0110 -2.4797 6 1 0.9165 0.8668 -2.3806 7 6 1.8704 -0.4824 -3.7319 8 7 2.6257 -1.5523 -3.8525 9 14 1.2471 0.3977 -5.2571 10 1 0.4227 1.5648 -4.8531 11 1 2.4019 0.8642 -6.0660 12 1 0.4219 -0.5359 -6.0649 13 6 2.0399 -0.7212 1.2493 14 7 1.5516 -0.0305 2.4455 15 16 1.6154 -0.7822 3.9197 16 8 1.0719 -2.0816 3.7313 17 8 1.1017 0.1455 4.8657 18 6 3.3171 -1.0074 4.3172 19 6 3.9087 -2.2120 4.4617 20 16 5.5478 -1.8741 4.8477 21 7 5.4430 -0.3166 4.8097 22 6 4.2201 0.0375 4.5161 23 6 3.8179 1.4532 4.4080 24 8 2.6957 1.7395 4.0408 25 8 4.6933 2.4281 4.7217 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6766 1.9564 0.8900 32 1 3.1300 -0.7217 -1.2489 33 1 1.6767 -1.7490 -1.2491 34 1 2.8600 -1.8837 -4.7334 35 1 3.1299 -0.7216 1.2491 36 1 1.6766 -1.7488 1.2494 37 1 1.1910 0.8670 2.3740 38 1 3.4475 -3.1834 4.3604 39 1 4.3829 3.3402 4.6392 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609673913.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:44 Heat of formation + Delta-G solvation = -123.452849 kcal Electronic energy + Delta-G solvation = -27321.951874 eV Core-core repulsion = 23290.730654 eV Total energy + Delta-G solvation = -4031.221221 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.05358 -39.16340 -37.70221 -37.12082 -36.36259 -35.76267 -33.51468 -32.36954 -31.87595 -27.80571 -27.02191 -26.42940 -25.80791 -23.71957 -22.73483 -21.42919 -19.69413 -19.01566 -18.51122 -18.35881 -17.76017 -17.10585 -16.40202 -16.32496 -16.07802 -15.61231 -14.81878 -14.56506 -14.44240 -14.37698 -14.08268 -13.80090 -13.32422 -12.80679 -12.42822 -12.36483 -12.13029 -12.07616 -11.98525 -11.86233 -11.80515 -11.75838 -11.32621 -11.18000 -10.99653 -10.91716 -10.81919 -10.74511 -10.60635 -10.38550 -10.22030 -9.87735 -9.58376 -9.23591 -9.13191 -8.88946 -8.36610 -6.01125 -4.01414 -0.07010 0.27635 0.62058 0.95436 1.18684 2.41243 2.55782 3.08918 3.30020 3.38354 3.41462 3.74276 3.97031 4.45059 4.49157 4.75967 4.90483 4.96032 5.32456 5.35143 5.50439 5.57223 5.78463 5.89099 6.05380 6.16754 6.26018 6.38812 6.45241 6.69897 6.72442 7.09717 7.12276 7.16827 7.30539 7.50166 7.62502 7.75494 7.98252 8.41299 9.03518 9.61848 11.10523 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.014725 B = 0.003316 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.122809 B = 8441.714634 C = 8595.814999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.064 4.064 3 C -0.128 4.128 4 C 0.034 3.966 5 C -0.508 4.508 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.123 3.877 14 N -1.092 6.092 15 S 2.721 3.279 16 O -0.955 6.955 17 O -0.941 6.941 18 C -0.692 4.692 19 C -0.169 4.169 20 S 0.529 5.471 21 N -0.498 5.498 22 C 0.141 3.859 23 C 0.552 3.448 24 O -0.472 6.472 25 O -0.491 6.491 26 H 0.034 0.966 27 H 0.065 0.935 28 H 0.048 0.952 29 H 0.044 0.956 30 H 0.066 0.934 31 H 0.034 0.966 32 H 0.017 0.983 33 H 0.020 0.980 34 H 0.259 0.741 35 H 0.054 0.946 36 H 0.077 0.923 37 H 0.424 0.576 38 H 0.211 0.789 39 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.979 0.702 19.750 20.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.065 4.065 3 C -0.185 4.185 4 C -0.004 4.004 5 C -0.547 4.547 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.211 1.211 13 C -0.003 4.003 14 N -0.857 5.857 15 S 2.801 3.199 16 O -0.945 6.945 17 O -0.931 6.931 18 C -0.787 4.787 19 C -0.318 4.318 20 S 0.683 5.317 21 N -0.333 5.333 22 C -0.032 4.032 23 C 0.389 3.611 24 O -0.357 6.357 25 O -0.302 6.302 26 H 0.053 0.947 27 H 0.084 0.916 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.085 0.915 31 H 0.053 0.947 32 H 0.035 0.965 33 H 0.038 0.962 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.096 0.904 37 H 0.263 0.737 38 H 0.228 0.772 39 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 7.413 -0.349 20.606 21.902 hybrid contribution -1.464 1.796 -1.614 2.824 sum 5.948 1.447 18.992 19.955 Atomic orbital electron populations 1.21757 0.95000 1.01332 1.00498 1.20791 0.95796 0.95699 0.94264 1.21757 1.00145 0.96060 1.00542 1.19139 0.96178 0.95364 0.89725 1.21242 1.30913 1.12030 0.90472 0.92126 1.25000 0.95340 0.95077 0.99069 1.69964 1.37247 1.23102 1.23291 0.86597 0.78597 0.79729 0.83432 1.19773 1.21211 1.21130 1.21595 0.97699 0.96405 0.84588 1.55360 1.77836 1.30589 1.21953 1.01512 0.71953 0.73393 0.73072 1.93597 1.74287 1.40558 1.86059 1.93599 1.76230 1.62819 1.60498 1.31812 1.30270 0.96828 1.19837 1.27409 1.03449 1.02628 0.98313 1.80687 1.05454 0.95315 1.50247 1.72283 1.23543 1.16116 1.21324 1.19334 0.87583 0.92483 1.03830 1.19562 0.82307 0.84759 0.74500 1.90991 1.19840 1.82978 1.41842 1.84586 1.45190 1.19860 1.80528 0.94722 0.91577 0.93240 0.93708 0.91467 0.94682 0.96505 0.96209 0.93155 0.92783 0.90449 0.73702 0.77199 0.71922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 8.05 37.16 0.30 -2.05 16 2 C -0.06 -1.21 0.55 -154.51 -0.08 -1.29 16 3 C -0.13 -2.28 8.05 37.16 0.30 -1.98 16 4 C 0.03 0.80 4.04 -27.88 -0.11 0.69 16 5 C -0.51 -13.37 7.65 -34.44 -0.26 -13.63 16 6 H 0.06 1.55 5.68 -52.49 -0.30 1.25 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -26.01 13.29 55.43 0.74 -25.27 16 9 Si 0.89 21.11 29.54 -169.99 -5.02 16.08 16 10 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 13 C 0.12 2.00 5.12 -4.04 -0.02 1.98 16 14 N -1.09 -16.20 4.31 -10.61 -0.05 -16.25 16 15 S 2.72 39.71 4.94 -107.50 -0.53 39.18 16 16 O -0.96 -15.37 17.08 -57.17 -0.98 -16.34 16 17 O -0.94 -15.75 15.80 -66.66 -1.05 -16.80 16 18 C -0.69 -8.56 5.96 -40.26 -0.24 -8.80 16 19 C -0.17 -1.55 10.89 29.57 0.32 -1.23 16 20 S 0.53 4.09 23.20 -107.50 -2.49 1.60 16 21 N -0.50 -5.75 11.22 24.86 0.28 -5.47 16 22 C 0.14 1.79 6.66 -84.08 -0.56 1.23 16 23 C 0.55 7.05 8.27 34.53 0.29 7.34 16 24 O -0.47 -6.70 12.31 -26.99 -0.33 -7.03 16 25 O -0.49 -4.85 13.33 -40.59 -0.54 -5.39 16 26 H 0.03 0.55 7.21 -51.93 -0.37 0.17 16 27 H 0.07 1.29 6.62 -51.93 -0.34 0.94 16 28 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 1.29 6.62 -51.92 -0.34 0.95 16 31 H 0.03 0.54 6.60 -51.93 -0.34 0.20 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 35 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.08 1.26 7.74 -51.93 -0.40 0.86 16 37 H 0.42 6.14 5.76 -34.47 -0.20 5.94 16 38 H 0.21 1.36 8.04 -52.48 -0.42 0.94 16 39 H 0.42 2.00 9.11 45.56 0.42 2.41 16 LS Contribution 349.42 15.07 5.27 5.27 Total: -1.00 -35.18 349.42 -8.44 -43.63 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -3.56 Total: 3.10 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: -0.17 Total: -16.29 kcal Atomic # 7 Polarization: -47.96 SS G_CDS: 0.97 Total: -46.99 kcal Atomic # 8 Polarization: -42.66 SS G_CDS: -2.90 Total: -45.57 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 43.80 SS G_CDS: -3.03 Total: 40.78 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -35.18 -8.44 -43.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609673913.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.826 kcal (2) G-P(sol) polarization free energy of solvation -35.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds