Wall clock time and date at job start Wed Apr 1 2020 05:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47168 * 2 1 4 4 C 1.52995 * 109.47332 * 239.99609 * 2 1 3 5 5 C 1.50703 * 109.47159 * 60.00011 * 4 2 1 6 6 H 1.07997 * 119.99558 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00067 * 180.02562 * 5 4 2 8 8 N 1.31512 * 119.99974 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99760 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47458 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47070 * 119.99947 * 9 7 5 12 12 H 1.48495 * 109.47390 * 239.99983 * 9 7 5 13 13 C 1.53001 * 109.46976 * 119.99664 * 2 1 3 14 14 N 1.46503 * 109.47393 * 299.99910 * 13 2 1 15 15 S 1.65599 * 120.00153 * 164.55267 * 14 13 2 16 16 O 1.42101 * 106.40018 * 311.73460 * 15 14 13 17 17 O 1.42103 * 106.40301 * 178.81231 * 15 14 13 18 18 C 1.76200 * 107.21892 * 65.27467 * 15 14 13 19 19 C 1.34976 * 124.16068 * 243.63055 * 18 15 14 20 20 S 1.71755 * 105.46874 * 180.21211 * 19 18 15 21 21 N 1.56148 * 97.28217 * 359.74288 * 20 19 18 22 22 C 1.30652 * 109.79243 * 359.97438 * 21 20 19 23 23 C 1.47562 * 122.11291 * 180.02562 * 22 21 20 24 24 O 1.21499 * 120.00019 * 174.80437 * 23 22 21 25 25 O 1.34737 * 120.00198 * 354.53064 * 23 22 21 26 26 H 1.09004 * 109.47215 * 300.00028 * 1 2 3 27 27 H 1.08998 * 109.47425 * 60.00076 * 1 2 3 28 28 H 1.09000 * 109.47111 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47068 * 180.02562 * 3 2 1 30 30 H 1.09007 * 109.47000 * 299.99678 * 3 2 1 31 31 H 1.09003 * 109.47587 * 59.99761 * 3 2 1 32 32 H 1.09001 * 109.47424 * 180.02562 * 4 2 1 33 33 H 1.09000 * 109.46964 * 300.00018 * 4 2 1 34 34 H 0.96995 * 120.00144 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.46984 * 179.97438 * 13 2 1 36 36 H 1.09000 * 109.47304 * 59.99992 * 13 2 1 37 37 H 0.96996 * 119.99956 * 344.55542 * 14 13 2 38 38 H 1.08004 * 127.26479 * 359.95525 * 19 18 15 39 39 H 0.96696 * 117.00231 * 180.27700 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5377 -0.0110 -2.4797 6 1 0.9165 0.8668 -2.3806 7 6 1.8704 -0.4824 -3.7319 8 7 2.6257 -1.5523 -3.8525 9 14 1.2471 0.3977 -5.2571 10 1 0.4227 1.5648 -4.8531 11 1 2.4019 0.8642 -6.0660 12 1 0.4219 -0.5359 -6.0649 13 6 2.0399 -0.7212 1.2493 14 7 1.5516 -0.0305 2.4455 15 16 1.6154 -0.7822 3.9197 16 8 1.0719 -2.0816 3.7313 17 8 1.1017 0.1455 4.8657 18 6 3.3171 -1.0074 4.3172 19 6 3.9087 -2.2120 4.4617 20 16 5.5478 -1.8741 4.8477 21 7 5.4430 -0.3166 4.8097 22 6 4.2201 0.0375 4.5161 23 6 3.8179 1.4532 4.4080 24 8 2.6957 1.7395 4.0408 25 8 4.6933 2.4281 4.7217 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6766 1.9564 0.8900 32 1 3.1300 -0.7217 -1.2489 33 1 1.6767 -1.7490 -1.2491 34 1 2.8600 -1.8837 -4.7334 35 1 3.1299 -0.7216 1.2491 36 1 1.6766 -1.7488 1.2494 37 1 1.1910 0.8670 2.3740 38 1 3.4475 -3.1834 4.3604 39 1 4.3829 3.3402 4.6392 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609673913.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:43 Heat of formation + Delta-G solvation = -150.634204 kcal Electronic energy + Delta-G solvation = -27323.130546 eV Core-core repulsion = 23290.730654 eV Total energy + Delta-G solvation = -4032.399893 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.90346 -40.00245 -39.19111 -38.28384 -37.25030 -36.96413 -35.20051 -33.62336 -33.18223 -28.95250 -28.63907 -27.91337 -27.23593 -24.66413 -24.52501 -22.34240 -20.55924 -20.06199 -19.85851 -19.37917 -18.62601 -18.34216 -18.30616 -17.26023 -17.01932 -16.89114 -16.46366 -15.72543 -15.64456 -15.50563 -15.16486 -14.90876 -14.62900 -14.41836 -13.99235 -13.89559 -13.30559 -13.26631 -13.17994 -13.13802 -12.92174 -12.69717 -12.65660 -12.63757 -12.60670 -12.28744 -12.27683 -12.16622 -11.91750 -11.76903 -11.59069 -11.49387 -10.93365 -10.81618 -10.47735 -10.37671 -10.28715 -8.11498 -6.17077 -0.84418 -0.74994 -0.27127 0.21287 0.42025 1.41804 1.44210 1.51325 1.54869 1.79484 1.97317 2.46389 2.65818 3.07125 3.23562 3.63898 3.91012 3.94220 3.98703 4.14582 4.25381 4.30019 4.52833 4.67941 4.75235 4.81364 4.94226 5.03147 5.17728 5.21864 5.32286 5.51714 5.54410 5.56550 5.62139 5.86072 5.94565 6.15808 6.37618 6.74861 6.97403 7.49888 9.00853 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.014725 B = 0.003316 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.122809 B = 8441.714634 C = 8595.814999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.061 4.061 3 C -0.122 4.122 4 C 0.039 3.961 5 C -0.513 4.513 6 H 0.066 0.934 7 C 0.000 4.000 8 N -0.935 5.935 9 Si 0.952 3.048 10 H -0.263 1.263 11 H -0.284 1.284 12 H -0.284 1.284 13 C 0.131 3.869 14 N -1.092 6.092 15 S 2.738 3.262 16 O -0.975 6.975 17 O -0.966 6.966 18 C -0.713 4.713 19 C -0.172 4.172 20 S 0.627 5.373 21 N -0.528 5.528 22 C 0.120 3.880 23 C 0.547 3.453 24 O -0.495 6.495 25 O -0.487 6.487 26 H 0.060 0.940 27 H 0.051 0.949 28 H 0.042 0.958 29 H 0.041 0.959 30 H 0.051 0.949 31 H 0.061 0.939 32 H -0.005 1.005 33 H -0.006 1.006 34 H 0.259 0.741 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.426 0.574 38 H 0.236 0.764 39 H 0.440 0.560 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.667 0.902 20.708 21.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.063 4.063 3 C -0.179 4.179 4 C 0.001 3.999 5 C -0.551 4.551 6 H 0.084 0.916 7 C -0.197 4.197 8 N -0.576 5.576 9 Si 0.778 3.222 10 H -0.187 1.187 11 H -0.210 1.210 12 H -0.210 1.210 13 C 0.005 3.995 14 N -0.856 5.856 15 S 2.822 3.178 16 O -0.965 6.965 17 O -0.956 6.956 18 C -0.812 4.812 19 C -0.321 4.321 20 S 0.780 5.220 21 N -0.365 5.365 22 C -0.051 4.051 23 C 0.385 3.615 24 O -0.382 6.382 25 O -0.301 6.301 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.013 0.987 33 H 0.013 0.987 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.265 0.735 38 H 0.253 0.747 39 H 0.303 0.697 Dipole moment (debyes) X Y Z Total from point charges 8.053 -0.104 21.565 23.020 hybrid contribution -1.502 1.658 -1.811 2.878 sum 6.551 1.554 19.754 20.870 Atomic orbital electron populations 1.21723 0.94432 1.01152 1.01085 1.20643 0.96248 0.96107 0.93276 1.21679 0.99974 0.95210 1.01043 1.19007 0.94669 0.94432 0.91757 1.21636 1.30147 1.11936 0.91367 0.91573 1.25818 0.95757 0.95855 1.02268 1.70088 1.38862 1.24752 1.23917 0.85595 0.78064 0.78822 0.79745 1.18658 1.21011 1.21043 1.21372 0.98208 0.96016 0.83936 1.55226 1.78223 1.30493 1.21628 1.00628 0.72398 0.72465 0.72350 1.93568 1.75628 1.41153 1.86191 1.93565 1.77610 1.63501 1.60949 1.31376 1.29052 0.98205 1.22608 1.27871 1.04683 1.02786 0.96729 1.80364 1.02757 0.92193 1.46662 1.72021 1.23381 1.19300 1.21762 1.19322 0.88038 0.92579 1.05188 1.19765 0.82216 0.85427 0.74083 1.90963 1.20705 1.83424 1.43152 1.84554 1.44689 1.20975 1.79881 0.92081 0.92974 0.93838 0.93938 0.93035 0.92020 0.98678 0.98715 0.93200 0.91850 0.90576 0.73502 0.74738 0.69686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.57 8.05 71.98 0.58 -3.99 16 2 C -0.06 -2.30 0.55 -52.19 -0.03 -2.33 16 3 C -0.12 -4.24 8.05 71.98 0.58 -3.66 16 4 C 0.04 1.91 4.04 29.85 0.12 2.03 16 5 C -0.51 -27.20 7.65 25.60 0.20 -27.00 16 6 H 0.07 3.38 5.68 -2.91 -0.02 3.36 16 7 C 0.00 0.00 5.46 84.66 0.46 0.46 16 8 N -0.93 -55.19 13.29 21.45 0.28 -54.90 16 9 Si 0.95 43.44 29.54 68.60 2.03 45.47 16 10 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 12 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 13 C 0.13 4.20 5.12 86.38 0.44 4.64 16 14 N -1.09 -31.47 4.31 -187.48 -0.81 -32.28 16 15 S 2.74 78.03 4.94 -56.49 -0.28 77.75 16 16 O -0.98 -30.64 17.08 -128.00 -2.19 -32.82 16 17 O -0.97 -32.05 15.80 -118.93 -1.88 -33.92 16 18 C -0.71 -16.66 5.96 21.83 0.13 -16.53 16 19 C -0.17 -2.73 10.89 67.07 0.73 -2.00 16 20 S 0.63 7.79 23.20 -56.49 -1.31 6.48 16 21 N -0.53 -11.11 11.22 -75.25 -0.84 -11.95 16 22 C 0.12 2.91 6.66 42.09 0.28 3.19 16 23 C 0.55 13.55 8.27 70.28 0.58 14.13 16 24 O -0.50 -13.82 12.31 27.22 0.34 -13.48 16 25 O -0.49 -9.08 13.33 -56.47 -0.75 -9.84 16 26 H 0.06 1.86 7.21 -2.39 -0.02 1.84 16 27 H 0.05 2.00 6.62 -2.39 -0.02 1.99 16 28 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.04 1.47 8.14 -2.39 -0.02 1.46 16 30 H 0.05 1.94 6.62 -2.38 -0.02 1.93 16 31 H 0.06 1.81 6.60 -2.39 -0.02 1.79 16 32 H -0.01 -0.27 8.14 -2.39 -0.02 -0.29 16 33 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 34 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 35 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.08 2.46 7.74 -2.39 -0.02 2.44 16 37 H 0.43 11.87 5.76 -96.75 -0.56 11.31 16 38 H 0.24 2.35 8.04 -2.91 -0.02 2.33 16 39 H 0.44 3.66 9.11 -74.06 -0.67 2.99 16 Total: -1.00 -76.08 349.42 -1.44 -77.52 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -0.10 Total: 13.05 kcal Atomic # 6 Polarization: -35.14 SS G_CDS: 4.07 Total: -31.07 kcal Atomic # 7 Polarization: -97.77 SS G_CDS: -1.37 Total: -99.14 kcal Atomic # 8 Polarization: -85.58 SS G_CDS: -4.48 Total: -90.06 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Atomic # 16 Polarization: 85.82 SS G_CDS: -1.59 Total: 84.23 kcal Total: -76.08 -1.44 -77.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609673913.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.113 kcal (2) G-P(sol) polarization free energy of solvation -76.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds