Wall clock time and date at job start Wed Apr 1 2020 05:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 113.99585 * 2 1 4 4 C 1.53009 * 109.46786 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.46991 * 64.99828 * 4 3 2 6 6 C 1.36975 * 120.00059 * 276.43527 * 5 4 3 7 7 H 1.07996 * 119.99677 * 42.65766 * 6 5 4 8 8 C 1.38966 * 119.99872 * 222.65690 * 6 5 4 9 9 N 1.31417 * 120.00285 * 23.62670 * 8 6 5 10 10 Si 1.86809 * 119.99841 * 203.62813 * 8 6 5 11 11 H 1.48499 * 109.47084 * 64.99794 * 10 8 6 12 12 H 1.48498 * 109.46786 * 184.99728 * 10 8 6 13 13 H 1.48498 * 109.46936 * 304.99668 * 10 8 6 14 14 C 1.34776 * 119.99839 * 96.44416 * 5 4 3 15 15 O 1.21662 * 120.00068 * 185.89629 * 14 5 4 16 16 C 1.47114 * 120.00269 * 5.89248 * 14 5 4 17 17 C 1.44438 * 123.47037 * 318.61420 * 16 14 5 18 18 C 1.32764 * 113.09076 * 180.17891 * 17 16 14 19 19 S 1.76196 * 124.70796 * 179.81570 * 18 17 16 20 20 N 1.65607 * 107.21666 * 84.90187 * 19 18 17 21 21 O 1.42101 * 106.40374 * 331.36545 * 19 18 17 22 22 O 1.42097 * 106.40184 * 198.43933 * 19 18 17 23 23 S 1.75504 * 110.58714 * 359.55293 * 18 17 16 24 24 C 1.36088 * 123.47229 * 138.29922 * 16 14 5 25 25 C 1.50707 * 124.59483 * 0.03406 * 24 16 14 26 26 H 1.08998 * 109.47548 * 300.00226 * 1 2 3 27 27 H 1.08996 * 109.47070 * 60.00371 * 1 2 3 28 28 H 1.09008 * 109.46985 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47279 * 60.00088 * 3 2 1 30 30 H 1.08995 * 109.47385 * 299.99773 * 3 2 1 31 31 H 1.09001 * 109.46777 * 304.99492 * 4 3 2 32 32 H 1.09001 * 109.46905 * 184.99883 * 4 3 2 33 33 H 0.97003 * 120.00003 * 184.95378 * 9 8 6 34 34 H 1.08001 * 123.45682 * 0.03251 * 17 16 14 35 35 H 0.96996 * 119.99656 * 0.02562 * 20 19 18 36 36 H 0.96998 * 119.99385 * 179.72864 * 20 19 18 37 37 H 1.09004 * 109.47044 * 180.02562 * 25 24 16 38 38 H 1.08996 * 109.47421 * 300.02349 * 25 24 16 39 39 H 1.08998 * 109.46858 * 60.02842 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5640 -1.2508 6 6 3.9719 -0.7998 -1.3777 7 1 3.1358 -1.3738 -1.0066 8 6 5.0431 -1.4449 -1.9841 9 7 6.2239 -0.8690 -2.0169 10 14 4.8045 -3.1307 -2.7527 11 1 3.8738 -3.0223 -3.9048 12 1 6.1140 -3.6508 -3.2215 13 1 4.2359 -4.0592 -1.7428 14 6 4.3873 1.3349 -2.2772 15 8 4.6514 0.8279 -3.3512 16 6 4.5162 2.7895 -2.0990 17 6 3.5574 3.5915 -1.3754 18 6 3.8741 4.8805 -1.3449 19 16 2.9184 6.1299 -0.5511 20 7 3.3661 6.1507 1.0431 21 8 1.5694 5.6844 -0.5833 22 8 3.3410 7.3694 -1.1027 23 16 5.3806 5.1661 -2.1986 24 6 5.5544 3.5172 -2.5937 25 6 6.7022 2.9429 -3.3836 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6885 1.8464 0.8900 30 1 1.6885 1.8464 -0.8899 31 1 3.8507 0.5686 0.8428 32 1 3.9784 2.1766 0.0902 33 1 6.9534 -1.2856 -2.5019 34 1 2.6722 3.1848 -0.9090 35 1 4.0448 5.5367 1.3643 36 1 2.9526 6.7799 1.6547 37 1 7.3917 3.7421 -3.6560 38 1 7.2252 2.2024 -2.7786 39 1 6.3199 2.4692 -4.2878 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001625826186.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:40:56 Heat of formation + Delta-G solvation = -132.754130 kcal Electronic energy + Delta-G solvation = -27554.664224 eV Core-core repulsion = 23523.039670 eV Total energy + Delta-G solvation = -4031.624554 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.95729 -38.69828 -38.33335 -37.90167 -36.99079 -36.16205 -34.06447 -33.97084 -33.20017 -30.56459 -28.90900 -27.30130 -26.48155 -24.80852 -23.74635 -22.82772 -20.64115 -20.35951 -19.24117 -18.42521 -18.38479 -17.92138 -17.65427 -17.33634 -16.64316 -16.55140 -16.41787 -16.26659 -16.02873 -15.64426 -15.33235 -14.85768 -14.52462 -14.37713 -13.72597 -13.61716 -13.47904 -13.27463 -13.25040 -13.23188 -13.14530 -13.10906 -12.82542 -12.77017 -12.70649 -12.52976 -12.37290 -12.18719 -12.10629 -11.97841 -11.35624 -10.74998 -10.48781 -10.27442 -10.20315 -9.43801 -9.18090 -8.23285 -5.92197 -0.77618 -0.58211 0.26481 0.59994 0.80866 1.38162 1.46036 1.49993 2.10061 2.31049 2.55401 2.59534 2.96055 3.14650 3.30170 3.57257 3.68683 3.94152 4.03405 4.20722 4.27249 4.37849 4.46465 4.49574 4.50302 4.59032 4.61083 4.62300 4.84803 4.88290 5.00897 5.06570 5.15983 5.30522 5.62325 6.28220 6.37800 6.38213 7.01781 7.18633 7.65382 8.26965 8.84295 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.012929 B = 0.004703 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.136344 B = 5952.293800 C = 7672.991761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.400 6.400 3 C 0.042 3.958 4 C 0.089 3.911 5 N -0.446 5.446 6 C -0.342 4.342 7 H 0.086 0.914 8 C 0.029 3.971 9 N -0.867 5.867 10 Si 0.958 3.042 11 H -0.290 1.290 12 H -0.286 1.286 13 H -0.259 1.259 14 C 0.524 3.476 15 O -0.588 6.588 16 C -0.192 4.192 17 C 0.024 3.976 18 C -0.821 4.821 19 S 2.757 3.243 20 N -1.229 6.229 21 O -0.983 6.983 22 O -0.981 6.981 23 S 0.343 5.657 24 C -0.139 4.139 25 C -0.081 4.081 26 H 0.061 0.939 27 H 0.036 0.964 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.041 0.959 31 H 0.075 0.925 32 H 0.100 0.900 33 H 0.260 0.740 34 H 0.171 0.829 35 H 0.431 0.569 36 H 0.434 0.566 37 H 0.102 0.898 38 H 0.067 0.933 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.585 15.124 8.907 17.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.319 6.319 3 C -0.036 4.036 4 C -0.034 4.034 5 N -0.166 5.166 6 C -0.470 4.470 7 H 0.103 0.897 8 C -0.177 4.177 9 N -0.503 5.503 10 Si 0.784 3.216 11 H -0.217 1.217 12 H -0.211 1.211 13 H -0.183 1.183 14 C 0.312 3.688 15 O -0.472 6.472 16 C -0.208 4.208 17 C -0.011 4.011 18 C -1.020 5.020 19 S 2.840 3.160 20 N -0.912 5.912 21 O -0.972 6.972 22 O -0.971 6.971 23 S 0.611 5.389 24 C -0.261 4.261 25 C -0.139 4.139 26 H 0.080 0.920 27 H 0.054 0.946 28 H 0.108 0.892 29 H 0.110 0.890 30 H 0.059 0.941 31 H 0.093 0.907 32 H 0.118 0.882 33 H 0.069 0.931 34 H 0.188 0.812 35 H 0.262 0.738 36 H 0.268 0.732 37 H 0.121 0.879 38 H 0.086 0.914 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.944 16.466 7.514 18.337 hybrid contribution -0.386 -2.980 -0.174 3.010 sum -3.330 13.486 7.339 15.711 Atomic orbital electron populations 1.22900 0.80454 1.03335 1.00545 1.88051 1.20637 1.27874 1.95380 1.23269 0.94016 0.85392 1.00894 1.22047 0.93047 0.99439 0.88885 1.43281 1.58156 1.05261 1.09879 1.19259 1.02852 0.81531 1.43339 0.89680 1.25873 0.93476 1.01330 0.97016 1.69977 1.00679 1.42335 1.37312 0.85565 0.76937 0.80082 0.79064 1.21660 1.21113 1.18304 1.17760 0.81939 0.84796 0.84271 1.90556 1.54015 1.74938 1.27651 1.20695 0.98193 0.95671 1.06279 1.21478 0.97377 0.90427 0.91848 1.35313 1.20658 1.16661 1.29409 0.99943 0.71917 0.71278 0.72884 1.52577 1.57681 1.52969 1.27943 1.93583 1.34731 1.82127 1.86795 1.93582 1.82663 1.42004 1.78812 1.82373 1.11808 0.98894 1.45786 1.25207 0.99822 1.00977 1.00078 1.20396 0.93525 1.01071 0.98912 0.92012 0.94572 0.89224 0.88990 0.94069 0.90656 0.88176 0.93122 0.81163 0.73806 0.73195 0.87943 0.91405 0.91267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.64 11.01 113.37 1.25 1.89 16 2 O -0.40 -14.68 9.18 -148.98 -1.37 -16.04 16 3 C 0.04 1.34 5.17 71.99 0.37 1.71 16 4 C 0.09 3.37 5.35 86.38 0.46 3.83 16 5 N -0.45 -22.29 2.52 -639.57 -1.61 -23.90 16 6 C -0.34 -19.14 8.75 84.06 0.74 -18.41 16 7 H 0.09 4.76 6.87 -2.91 -0.02 4.74 16 8 C 0.03 1.66 4.21 84.93 0.36 2.02 16 9 N -0.87 -51.12 12.20 21.67 0.26 -50.86 16 10 Si 0.96 46.51 29.62 68.60 2.03 48.54 16 11 H -0.29 -14.63 7.11 99.48 0.71 -13.92 16 12 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 13 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 14 C 0.52 26.90 6.41 86.57 0.55 27.46 16 15 O -0.59 -35.26 13.99 -4.23 -0.06 -35.32 16 16 C -0.19 -7.66 5.21 -19.87 -0.10 -7.77 16 17 C 0.02 0.74 7.57 22.67 0.17 0.91 16 18 C -0.82 -20.95 6.48 66.64 0.43 -20.52 16 19 S 2.76 57.75 6.40 -56.49 -0.36 57.39 16 20 N -1.23 -13.33 9.55 37.02 0.35 -12.98 16 21 O -0.98 -26.49 17.83 -128.00 -2.28 -28.78 16 22 O -0.98 -24.92 17.83 -128.00 -2.28 -27.20 16 23 S 0.34 8.52 22.74 -56.49 -1.28 7.24 16 24 C -0.14 -4.80 6.33 25.19 0.16 -4.64 16 25 C -0.08 -2.79 9.36 71.24 0.67 -2.13 16 26 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.04 0.95 8.14 -2.39 -0.02 0.94 16 28 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 29 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.04 1.38 6.49 -2.39 -0.02 1.36 16 31 H 0.08 2.88 8.09 -2.39 -0.02 2.86 16 32 H 0.10 3.17 4.96 -2.39 -0.01 3.15 16 33 H 0.26 14.85 8.32 -92.71 -0.77 14.08 16 34 H 0.17 4.94 3.98 -2.91 -0.01 4.93 16 35 H 0.43 2.93 8.92 -96.75 -0.86 2.07 16 36 H 0.43 2.66 8.96 -96.75 -0.87 1.79 16 37 H 0.10 2.54 8.12 -2.39 -0.02 2.52 16 38 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 39 H 0.07 2.76 7.59 -2.39 -0.02 2.74 16 Total: -1.00 -83.65 352.00 -2.13 -85.79 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -0.59 Total: 11.77 kcal Atomic # 6 Polarization: -20.71 SS G_CDS: 5.06 Total: -15.65 kcal Atomic # 7 Polarization: -86.75 SS G_CDS: -0.99 Total: -87.74 kcal Atomic # 8 Polarization: -101.34 SS G_CDS: -5.99 Total: -107.33 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Atomic # 16 Polarization: 66.27 SS G_CDS: -1.65 Total: 64.63 kcal Total: -83.65 -2.13 -85.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001625826186.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.966 kcal (2) G-P(sol) polarization free energy of solvation -83.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds