Wall clock time and date at job start Wed Apr 1 2020 06:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09007 * 109.46913 * 2 1 4 4 O 1.42900 * 109.47034 * 240.00393 * 2 1 3 5 5 C 1.52998 * 109.47239 * 120.00081 * 2 1 3 6 6 H 1.08993 * 109.47082 * 296.86614 * 5 2 1 7 7 N 1.46506 * 109.46685 * 56.86034 * 5 2 1 8 8 S 1.65596 * 119.99742 * 214.59089 * 7 5 2 9 9 O 1.42100 * 106.40130 * 178.85044 * 8 7 5 10 10 O 1.42094 * 106.40600 * 311.76998 * 8 7 5 11 11 C 1.76197 * 107.21775 * 65.31373 * 8 7 5 12 12 C 1.33389 * 125.20679 * 94.21922 * 11 8 7 13 13 C 1.38426 * 114.92012 * 179.97438 * 12 11 8 14 14 C 1.33380 * 114.92212 * 0.02562 * 13 12 11 15 15 S 1.75879 * 109.59521 * 359.75640 * 14 13 12 16 16 C 1.50697 * 109.46953 * 176.86013 * 5 2 1 17 17 O 1.21290 * 120.00167 * 250.56259 * 16 5 2 18 18 N 1.34777 * 119.99835 * 70.84256 * 16 5 2 19 19 C 1.46499 * 119.99662 * 182.65127 * 18 16 5 20 20 C 1.37099 * 119.99865 * 2.65835 * 18 16 5 21 21 H 1.07999 * 120.00047 * 3.18440 * 20 18 16 22 22 C 1.38952 * 119.99617 * 183.19532 * 20 18 16 23 23 N 1.31413 * 120.00272 * 7.16820 * 22 20 18 24 24 Si 1.86795 * 119.99565 * 187.17577 * 22 20 18 25 25 H 1.48502 * 109.47346 * 89.99945 * 24 22 20 26 26 H 1.48506 * 109.47058 * 209.99231 * 24 22 20 27 27 H 1.48500 * 109.47372 * 329.99424 * 24 22 20 28 28 H 1.09000 * 109.47370 * 304.47062 * 1 2 3 29 29 H 1.09003 * 109.46968 * 64.46646 * 1 2 3 30 30 H 1.08995 * 109.47286 * 184.46710 * 1 2 3 31 31 H 0.96705 * 114.00182 * 300.00013 * 4 2 1 32 32 H 0.97003 * 119.99770 * 34.59932 * 7 5 2 33 33 H 1.07996 * 122.53734 * 359.96684 * 12 11 8 34 34 H 1.08000 * 122.53523 * 180.02562 * 13 12 11 35 35 H 1.08006 * 125.20378 * 180.02562 * 14 13 12 36 36 H 1.08991 * 109.47677 * 354.46161 * 19 18 16 37 37 H 1.09007 * 109.46496 * 114.46173 * 19 18 16 38 38 H 1.08998 * 109.47078 * 234.45307 * 19 18 16 39 39 H 0.97000 * 119.99938 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0401 -0.7212 1.2492 6 1 1.7233 -0.1761 2.1382 7 7 1.4909 -2.0789 1.2875 8 16 1.1116 -2.7779 2.7400 9 8 0.5847 -4.0634 2.4413 10 8 2.2339 -2.5759 3.5878 11 6 -0.2123 -1.8472 3.4369 12 6 -1.5079 -2.1365 3.3062 13 6 -2.3685 -1.2596 3.9439 14 6 -1.7718 -0.2581 4.5919 15 16 -0.0274 -0.3983 4.4167 16 6 3.5450 -0.7890 1.2108 17 8 4.0997 -1.8510 1.0224 18 7 4.2747 0.3297 1.3916 19 6 5.7356 0.2745 1.2966 20 6 3.6498 1.5191 1.6644 21 1 2.5771 1.5502 1.7855 22 6 4.3967 2.6846 1.7850 23 7 5.6795 2.6754 1.4999 24 14 3.5773 4.2644 2.3525 25 1 3.6534 4.3575 3.8326 26 1 4.2732 5.4282 1.7469 27 1 2.1539 4.2635 1.9291 28 1 -0.3634 0.5816 0.8472 29 1 -0.3633 0.4430 -0.9273 30 1 -0.3633 -1.0245 0.0800 31 1 1.7210 -1.5952 -1.2330 32 1 1.3495 -2.5684 0.4620 33 1 -1.8588 -2.9901 2.7453 34 1 -3.4417 -1.3776 3.9187 35 1 -2.2817 0.5178 5.1439 36 1 6.0529 -0.7609 1.1735 37 1 6.0662 0.8603 0.4388 38 1 6.1745 0.6834 2.2066 39 1 6.2010 3.4890 1.5845 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001627266682.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:48:18 Heat of formation + Delta-G solvation = -127.005035 kcal Electronic energy + Delta-G solvation = -28132.683931 eV Core-core repulsion = 24101.308676 eV Total energy + Delta-G solvation = -4031.375255 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.99738 -38.85188 -38.54042 -38.29145 -37.07865 -36.78238 -35.31054 -33.38287 -31.62606 -30.88355 -29.34942 -27.50906 -25.79122 -25.43184 -22.77438 -21.59633 -21.14860 -20.27478 -19.88405 -19.22458 -18.75674 -18.54000 -17.41236 -16.95805 -16.61858 -16.31241 -16.12665 -16.00345 -15.87765 -15.63127 -15.22200 -14.64426 -14.36681 -14.19077 -13.86375 -13.54268 -13.47075 -13.39832 -13.36042 -13.26543 -13.24184 -13.23363 -12.79044 -12.72455 -12.63760 -12.55024 -12.37116 -12.04065 -11.78093 -11.70044 -11.41118 -11.14556 -11.01886 -10.35816 -9.99541 -9.88355 -9.61049 -8.18894 -5.86274 -0.84302 -0.46319 0.38724 0.87283 1.45272 1.49050 1.51907 1.61143 1.91567 2.01178 2.30396 2.58777 2.96470 3.16766 3.38851 3.50470 3.74052 3.89486 4.03101 4.04954 4.30997 4.37669 4.42090 4.45445 4.57969 4.85795 4.88983 4.93709 5.04217 5.16801 5.18684 5.30859 5.35681 5.39269 5.42205 5.78458 5.88367 6.41634 6.79857 7.12304 7.60278 8.00767 8.76485 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.011470 B = 0.005412 C = 0.004576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2440.514562 B = 5172.303994 C = 6117.610047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.108 3.892 3 H 0.111 0.889 4 O -0.566 6.566 5 C 0.133 3.867 6 H 0.109 0.891 7 N -1.082 6.082 8 S 2.726 3.274 9 O -0.973 6.973 10 O -0.990 6.990 11 C -0.813 4.813 12 C 0.023 3.977 13 C -0.164 4.164 14 C -0.148 4.148 15 S 0.164 5.836 16 C 0.434 3.566 17 O -0.633 6.633 18 N -0.456 5.456 19 C 0.139 3.861 20 C -0.353 4.353 21 H 0.121 0.879 22 C -0.011 4.011 23 N -0.902 5.902 24 Si 0.987 3.013 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.242 1.242 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.379 0.621 32 H 0.426 0.574 33 H 0.173 0.827 34 H 0.188 0.812 35 H 0.208 0.792 36 H 0.025 0.975 37 H 0.056 0.944 38 H 0.049 0.951 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.198 -0.951 2.980 21.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.046 3.954 3 H 0.129 0.871 4 O -0.372 6.372 5 C 0.022 3.978 6 H 0.127 0.873 7 N -0.842 5.842 8 S 2.817 3.183 9 O -0.963 6.963 10 O -0.980 6.980 11 C -1.018 5.018 12 C -0.013 4.013 13 C -0.193 4.193 14 C -0.286 4.286 15 S 0.429 5.571 16 C 0.221 3.779 17 O -0.521 6.521 18 N -0.174 5.174 19 C -0.005 4.005 20 C -0.480 4.480 21 H 0.139 0.861 22 C -0.212 4.212 23 N -0.542 5.542 24 Si 0.810 3.190 25 H -0.200 1.200 26 H -0.211 1.211 27 H -0.164 1.164 28 H 0.098 0.902 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.228 0.772 32 H 0.263 0.737 33 H 0.191 0.809 34 H 0.205 0.795 35 H 0.225 0.775 36 H 0.044 0.956 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -18.759 -0.497 3.830 19.153 hybrid contribution -1.103 -0.316 -0.298 1.186 sum -19.862 -0.812 3.532 20.190 Atomic orbital electron populations 1.22468 0.92405 1.04218 1.04224 1.22235 0.95362 0.96476 0.81284 0.87097 1.86663 1.78080 1.29363 1.43088 1.21152 0.90465 0.82900 1.03318 0.87309 1.54899 1.78200 1.25946 1.25205 1.00538 0.72885 0.72511 0.72415 1.93534 1.81124 1.37165 1.84521 1.93596 1.50788 1.86206 1.67395 1.35342 1.19043 1.20925 1.26531 1.20493 0.89077 0.98275 0.93479 1.20770 1.03263 0.94838 1.00475 1.26728 0.95673 1.03513 1.02640 1.84988 1.06733 1.18850 1.46515 1.20820 0.90642 0.83644 0.82763 1.90470 1.73496 1.30387 1.57750 1.43901 1.06109 1.07909 1.59451 1.21243 0.80911 0.96479 1.01869 1.20194 0.94566 0.84479 1.48747 0.86122 1.26257 0.96139 1.02738 0.96100 1.70339 1.07878 1.29484 1.46455 0.85004 0.79519 0.76196 0.78313 1.19998 1.21091 1.16446 0.90172 0.90029 0.90393 0.77237 0.73684 0.80934 0.79466 0.77473 0.95589 0.92541 0.93262 0.92125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.63 9.42 71.98 0.68 -2.95 16 2 C 0.11 3.38 3.17 30.59 0.10 3.48 16 3 H 0.11 3.96 6.23 -2.38 -0.01 3.94 16 4 O -0.57 -18.98 12.87 -148.98 -1.92 -20.89 16 5 C 0.13 4.91 1.60 44.24 0.07 4.98 16 6 H 0.11 3.85 6.33 -2.39 -0.02 3.84 16 7 N -1.08 -34.39 4.02 -172.52 -0.69 -35.08 16 8 S 2.73 91.65 5.81 -56.49 -0.33 91.32 16 9 O -0.97 -33.59 17.72 -128.00 -2.27 -35.85 16 10 O -0.99 -43.77 17.70 -128.00 -2.27 -46.04 16 11 C -0.81 -20.52 6.42 66.72 0.43 -20.09 16 12 C 0.02 0.41 9.82 21.22 0.21 0.62 16 13 C -0.16 -2.03 10.18 21.21 0.22 -1.82 16 14 C -0.15 -2.02 11.23 66.72 0.75 -1.27 16 15 S 0.16 3.92 22.73 -56.49 -1.28 2.63 16 16 C 0.43 21.69 6.55 87.66 0.57 22.27 16 17 O -0.63 -35.45 15.80 -3.06 -0.05 -35.50 16 18 N -0.46 -24.12 3.03 -658.90 -1.99 -26.11 16 19 C 0.14 7.55 8.87 127.77 1.13 8.68 16 20 C -0.35 -17.31 8.27 84.04 0.70 -16.62 16 21 H 0.12 5.15 5.26 -2.91 -0.02 5.13 16 22 C -0.01 -0.54 5.41 84.93 0.46 -0.08 16 23 N -0.90 -47.34 9.53 21.66 0.21 -47.13 16 24 Si 0.99 37.19 29.56 68.60 2.03 39.22 16 25 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 26 H -0.29 -10.87 7.11 99.48 0.71 -10.17 16 27 H -0.24 -8.00 7.11 99.48 0.71 -7.29 16 28 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.08 1.31 7.33 -2.39 -0.02 1.29 16 31 H 0.38 9.79 7.66 -74.05 -0.57 9.22 16 32 H 0.43 11.13 7.44 -96.74 -0.72 10.41 16 33 H 0.17 2.38 8.00 -2.91 -0.02 2.35 16 34 H 0.19 0.94 8.06 -2.91 -0.02 0.91 16 35 H 0.21 1.32 8.06 -2.91 -0.02 1.30 16 36 H 0.03 1.41 6.91 -2.39 -0.02 1.39 16 37 H 0.06 3.14 7.01 -2.38 -0.02 3.12 16 38 H 0.05 2.73 7.12 -2.39 -0.02 2.72 16 39 H 0.27 13.33 8.31 -92.71 -0.77 12.56 16 Total: -1.00 -78.71 351.02 -3.41 -82.13 By element: Atomic # 1 Polarization: 34.27 SS G_CDS: -0.16 Total: 34.11 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: 5.31 Total: -2.80 kcal Atomic # 7 Polarization: -105.84 SS G_CDS: -2.48 Total: -108.32 kcal Atomic # 8 Polarization: -131.78 SS G_CDS: -6.50 Total: -138.28 kcal Atomic # 14 Polarization: 37.19 SS G_CDS: 2.03 Total: 39.22 kcal Atomic # 16 Polarization: 95.57 SS G_CDS: -1.61 Total: 93.96 kcal Total: -78.71 -3.41 -82.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001627266682.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.879 kcal (2) G-P(sol) polarization free energy of solvation -78.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds