Wall clock time and date at job start Wed Apr 1 2020 05:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30642 * 1 3 3 Si 1.86801 * 119.99661 * 2 1 4 4 H 1.48507 * 109.46750 * 272.26826 * 3 2 1 5 5 H 1.48500 * 109.47436 * 32.26715 * 3 2 1 6 6 H 1.48498 * 109.47331 * 152.27226 * 3 2 1 7 7 C 1.40308 * 120.00298 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99783 * 349.03237 * 7 2 1 9 9 C 1.40536 * 119.99934 * 169.03965 * 7 2 1 10 10 C 1.44187 * 123.71470 * 331.11266 * 9 7 2 11 11 C 1.32766 * 114.43190 * 180.28989 * 10 9 7 12 12 S 1.75467 * 111.36221 * 359.77447 * 11 10 9 13 13 C 1.39543 * 123.71601 * 150.98285 * 9 7 2 14 14 C 1.46236 * 125.22912 * 359.97438 * 13 9 7 15 15 O 1.21763 * 119.99931 * 359.72721 * 14 13 9 16 16 N 1.34773 * 120.00059 * 179.72453 * 14 13 9 17 17 N 1.40100 * 119.99824 * 180.02562 * 16 14 13 18 18 C 1.34773 * 120.00246 * 179.97438 * 17 16 14 19 19 S 1.71201 * 120.00589 * 180.02562 * 18 17 16 20 20 N 1.34786 * 119.99644 * 0.02562 * 18 17 16 21 21 C 1.39333 * 119.99817 * 185.13951 * 20 18 17 22 22 C 1.39061 * 119.69794 * 174.54043 * 21 20 18 23 23 C 1.38347 * 119.10241 * 180.02562 * 22 21 20 24 24 C 1.38852 * 118.49279 * 0.02562 * 23 22 21 25 25 C 1.38054 * 119.31998 * 0.25226 * 24 23 22 26 26 N 1.31947 * 120.84960 * 359.47799 * 25 24 23 27 27 H 0.96996 * 120.00552 * 359.97438 * 1 2 3 28 28 H 1.08003 * 122.78639 * 0.02845 * 10 9 7 29 29 H 1.07999 * 124.31690 * 179.81491 * 11 10 9 30 30 H 0.96997 * 120.00140 * 359.97438 * 16 14 13 31 31 H 0.97005 * 120.00327 * 359.97438 * 17 16 14 32 32 H 0.97002 * 119.99887 * 5.13496 * 20 18 17 33 33 H 1.08005 * 120.45032 * 0.04806 * 22 21 20 34 34 H 1.07991 * 120.75123 * 180.02562 * 23 22 21 35 35 H 1.08001 * 120.33556 * 179.97438 * 24 23 22 36 36 H 1.08005 * 119.57602 * 179.72164 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 2.4398 2.0741 -1.3991 5 1 1.4626 2.6384 0.7474 6 1 3.5611 1.4270 0.6514 7 6 2.0080 -1.2151 -0.0005 8 1 1.4828 -2.1419 0.1770 9 6 3.3942 -1.2260 -0.2320 10 6 4.0798 -0.2416 -1.0320 11 6 5.3898 -0.4321 -1.1334 12 16 5.9004 -1.8520 -0.2378 13 6 4.2589 -2.1891 0.2893 14 6 3.8593 -3.3101 1.1391 15 8 2.6902 -3.4538 1.4475 16 7 4.7851 -4.1843 1.5810 17 7 4.4021 -5.2585 2.3947 18 6 5.3277 -6.1330 2.8361 19 16 4.8597 -7.4462 3.8299 20 7 6.6220 -5.9737 2.4952 21 6 7.5621 -6.9348 2.8611 22 6 8.8728 -6.8232 2.4100 23 6 9.7960 -7.7847 2.7804 24 6 9.3749 -8.8294 3.5923 25 6 8.0565 -8.8808 3.9985 26 7 7.1992 -7.9465 3.6336 27 1 -0.4851 0.8400 0.0004 28 1 3.5694 0.5800 -1.5125 29 1 6.0562 0.2059 -1.6949 30 1 5.7164 -4.0701 1.3350 31 1 3.4707 -5.3730 2.6404 32 1 6.8988 -5.1901 1.9950 33 1 9.1661 -5.9969 1.7793 34 1 10.8210 -7.7239 2.4458 35 1 10.0706 -9.5965 3.8990 36 1 7.7234 -9.6940 4.6263 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001637304770.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:04 Heat of formation + Delta-G solvation = 93.367891 kcal Electronic energy + Delta-G solvation = -24183.932818 eV Core-core repulsion = 20501.715321 eV Total energy + Delta-G solvation = -3682.217497 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 348.046 amu Computer time = 17.27 seconds Orbital eigenvalues (eV) -41.84685 -40.88955 -39.29675 -38.05112 -36.41652 -35.30293 -33.38673 -33.27343 -31.18664 -30.72381 -28.58674 -25.87704 -24.53398 -24.32211 -23.36560 -22.61719 -21.38607 -20.64355 -19.93544 -19.20805 -18.11079 -17.52470 -17.40699 -17.07398 -16.93506 -16.71823 -16.39753 -16.01745 -15.80338 -15.41607 -15.14204 -15.10771 -14.52981 -14.45871 -13.96029 -13.92426 -13.44663 -13.17432 -12.83231 -12.75481 -12.62253 -12.39837 -12.34057 -11.83124 -11.52747 -11.27119 -10.94528 -10.79549 -10.72147 -10.71081 -9.63501 -9.29656 -9.17577 -9.09672 -8.88122 -7.60220 -6.65108 -0.35397 -0.01210 0.15151 0.47198 0.66847 1.01005 1.13535 1.17138 1.33413 1.35573 1.41447 1.48834 1.61474 2.00390 2.22060 3.01262 3.04334 3.12672 3.56133 3.93363 4.03695 4.18122 4.23858 4.27986 4.37928 4.56027 4.81510 4.85742 4.88594 4.98936 5.09563 5.21712 5.29031 5.35528 5.49081 5.67933 5.88693 5.96827 6.10905 6.20159 6.36127 6.56993 7.22323 7.28691 7.93192 Molecular weight = 348.05amu Principal moments of inertia in cm(-1) A = 0.019676 B = 0.002698 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.740148 B =10374.126387 C =11622.394035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.035 3.965 3 Si 0.973 3.027 4 H -0.231 1.231 5 H -0.275 1.275 6 H -0.239 1.239 7 C -0.397 4.397 8 H 0.066 0.934 9 C 0.105 3.895 10 C -0.197 4.197 11 C -0.142 4.142 12 S 0.054 5.946 13 C -0.454 4.454 14 C 0.595 3.405 15 O -0.582 6.582 16 N -0.550 5.550 17 N -0.454 5.454 18 C 0.549 3.451 19 S -0.570 6.570 20 N -0.605 5.605 21 C 0.305 3.695 22 C -0.187 4.187 23 C -0.053 4.053 24 C -0.180 4.180 25 C 0.094 3.906 26 N -0.456 5.456 27 H 0.306 0.694 28 H 0.141 0.859 29 H 0.200 0.800 30 H 0.423 0.577 31 H 0.450 0.550 32 H 0.419 0.581 33 H 0.162 0.838 34 H 0.176 0.824 35 H 0.164 0.836 36 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.778 -3.906 -0.670 23.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.186 4.186 3 Si 0.792 3.208 4 H -0.155 1.155 5 H -0.201 1.201 6 H -0.162 1.162 7 C -0.427 4.427 8 H 0.084 0.916 9 C 0.094 3.906 10 C -0.229 4.229 11 C -0.276 4.276 12 S 0.311 5.689 13 C -0.575 4.575 14 C 0.393 3.607 15 O -0.464 6.464 16 N -0.303 5.303 17 N -0.181 5.181 18 C 0.189 3.811 19 S -0.441 6.441 20 N -0.234 5.234 21 C 0.074 3.926 22 C -0.210 4.210 23 C -0.079 4.079 24 C -0.201 4.201 25 C -0.065 4.065 26 N -0.170 5.170 27 H 0.117 0.883 28 H 0.159 0.841 29 H 0.217 0.783 30 H 0.266 0.734 31 H 0.300 0.700 32 H 0.260 0.740 33 H 0.180 0.820 34 H 0.193 0.807 35 H 0.182 0.818 36 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 21.866 -5.383 0.598 22.527 hybrid contribution -1.077 2.062 -1.092 2.570 sum 20.789 -3.321 -0.494 21.058 Atomic orbital electron populations 1.69585 1.09924 1.32987 1.30835 1.27450 0.95726 1.05354 0.90033 0.85496 0.79729 0.74358 0.81185 1.15500 1.20098 1.16224 1.19672 0.91852 0.95610 1.35580 0.91562 1.18176 0.92639 0.90522 0.89279 1.21409 0.95333 1.02095 1.04081 1.25583 0.98227 1.00969 1.02855 1.82314 1.06592 1.26181 1.53779 1.22460 0.97269 1.11703 1.26019 1.17247 0.83871 0.80501 0.79064 1.90787 1.19285 1.75282 1.61000 1.45376 1.11545 1.22030 1.51338 1.45102 1.11017 1.18025 1.43909 1.22286 0.82961 0.89180 0.86694 1.93297 1.82613 1.24545 1.43596 1.41992 1.03567 1.24142 1.53665 1.18728 0.87039 0.90086 0.96729 1.21806 0.90810 1.03812 1.04617 1.21805 1.00691 0.91501 0.93894 1.22528 0.97310 1.00681 0.99629 1.23421 0.90176 0.96437 0.96472 1.70298 1.34224 1.01906 1.10614 0.88271 0.84146 0.78344 0.73365 0.70039 0.73951 0.82046 0.80694 0.81805 0.81964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.51 13.92 21.89 0.30 -41.21 16 2 C 0.03 1.72 5.51 85.37 0.47 2.19 16 3 Si 0.97 35.95 24.48 68.60 1.68 37.63 16 4 H -0.23 -7.32 6.70 99.48 0.67 -6.65 16 5 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16 6 H -0.24 -8.77 6.50 99.48 0.65 -8.13 16 7 C -0.40 -21.46 8.93 23.33 0.21 -21.25 16 8 H 0.07 4.20 6.48 -2.91 -0.02 4.18 16 9 C 0.11 4.91 5.24 -20.89 -0.11 4.80 16 10 C -0.20 -7.31 7.35 22.61 0.17 -7.15 16 11 C -0.14 -4.15 11.07 66.64 0.74 -3.42 16 12 S 0.05 1.62 22.25 -56.49 -1.26 0.36 16 13 C -0.45 -19.42 6.51 24.66 0.16 -19.26 16 14 C 0.60 26.37 7.88 86.32 0.68 27.05 16 15 O -0.58 -31.23 14.38 -4.55 -0.07 -31.30 16 16 N -0.55 -18.51 6.25 -176.67 -1.10 -19.62 16 17 N -0.45 -15.42 6.26 -59.11 -0.37 -15.79 16 18 C 0.55 17.56 7.94 179.05 1.42 18.98 16 19 S -0.57 -21.85 26.88 -56.49 -1.52 -23.37 16 20 N -0.60 -14.80 5.34 -194.96 -1.04 -15.84 16 21 C 0.31 7.24 7.40 132.94 0.98 8.22 16 22 C -0.19 -2.78 9.94 22.49 0.22 -2.56 16 23 C -0.05 -0.58 10.17 22.44 0.23 -0.35 16 24 C -0.18 -2.32 10.10 22.37 0.23 -2.09 16 25 C 0.09 1.93 11.17 84.63 0.95 2.87 16 26 N -0.46 -12.71 6.11 -193.07 -1.18 -13.89 16 27 H 0.31 13.67 8.29 -92.71 -0.77 12.90 16 28 H 0.14 4.84 4.56 -2.91 -0.01 4.82 16 29 H 0.20 3.85 8.06 -2.91 -0.02 3.83 16 30 H 0.42 11.11 5.79 -213.32 -1.24 9.88 16 31 H 0.45 16.83 7.98 -213.31 -1.70 15.13 16 32 H 0.42 7.66 6.64 -92.71 -0.62 7.05 16 33 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 34 H 0.18 0.60 8.06 -2.92 -0.02 0.58 16 35 H 0.16 1.01 8.06 -2.91 -0.02 0.99 16 36 H 0.16 2.88 8.06 -2.91 -0.02 2.85 16 Total: -1.00 -74.63 335.42 -0.66 -75.29 By element: Atomic # 1 Polarization: 42.15 SS G_CDS: -2.45 Total: 39.70 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: 6.34 Total: 8.04 kcal Atomic # 7 Polarization: -102.95 SS G_CDS: -3.39 Total: -106.35 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: -0.07 Total: -31.30 kcal Atomic # 14 Polarization: 35.95 SS G_CDS: 1.68 Total: 37.63 kcal Atomic # 16 Polarization: -20.24 SS G_CDS: -2.78 Total: -23.01 kcal Total: -74.63 -0.66 -75.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001637304770.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.659 kcal (2) G-P(sol) polarization free energy of solvation -74.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 17.27 seconds