Wall clock time and date at job start Wed Apr 1 2020 04:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86801 * 119.99900 * 2 1 4 4 H 1.48502 * 109.46963 * 273.30826 * 3 2 1 5 5 H 1.48494 * 109.47148 * 33.30958 * 3 2 1 6 6 H 1.48497 * 109.47251 * 153.31318 * 3 2 1 7 7 C 1.39947 * 120.00211 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99661 * 27.37472 * 7 2 1 9 9 C 1.41403 * 119.99993 * 207.37510 * 7 2 1 10 10 C 1.40737 * 120.24324 * 36.23321 * 9 7 2 11 11 C 1.37593 * 119.74019 * 180.27278 * 10 9 7 12 12 C 1.38655 * 120.25146 * 359.71093 * 11 10 9 13 13 C 1.38612 * 120.50399 * 0.02562 * 12 11 10 14 14 C 1.37646 * 120.24242 * 359.97438 * 13 12 11 15 15 S 1.76200 * 120.12219 * 180.02562 * 14 13 12 16 16 O 1.42096 * 106.40812 * 333.08052 * 15 14 13 17 17 O 1.42107 * 106.40054 * 200.15963 * 15 14 13 18 18 O 1.52207 * 107.21897 * 86.62112 * 15 14 13 19 19 C 1.35976 * 113.99713 * 74.99615 * 18 15 14 20 20 C 1.38698 * 119.98766 * 270.02030 * 19 18 15 21 21 C 1.38224 * 120.08439 * 179.75851 * 20 19 18 22 22 C 1.38528 * 120.09728 * 0.44853 * 21 20 19 23 23 C 1.39261 * 119.91830 * 359.54880 * 22 21 20 24 24 C 1.38526 * 119.88123 * 0.22982 * 23 22 21 25 25 O 1.36508 * 108.64606 * 180.24648 * 23 22 21 26 26 C 1.43990 * 105.49926 * 342.70625 * 25 23 22 27 27 O 1.36597 * 131.46104 * 179.85437 * 22 21 20 28 28 H 0.96999 * 120.00268 * 359.97438 * 1 2 3 29 29 H 1.07993 * 120.12725 * 0.02562 * 10 9 7 30 30 H 1.08001 * 119.87494 * 179.72503 * 11 10 9 31 31 H 1.08003 * 119.74604 * 180.02562 * 12 11 10 32 32 H 1.07989 * 119.87839 * 180.02562 * 13 12 11 33 33 H 1.07998 * 119.95727 * 0.02562 * 20 19 18 34 34 H 1.07995 * 119.94949 * 180.33962 * 21 20 19 35 35 H 1.08002 * 120.00573 * 180.02562 * 24 23 22 36 36 H 1.09001 * 110.56728 * 268.58054 * 26 25 23 37 37 H 1.08993 * 110.56966 * 145.70761 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4197 2.0868 -1.3978 5 1 1.4764 2.6314 0.7688 6 1 3.5730 1.4210 0.6288 7 6 2.0080 -1.2120 0.0005 8 1 1.5587 -2.0951 -0.4291 9 6 3.3032 -1.2802 0.5637 10 6 3.6188 -0.5260 1.7092 11 6 4.8841 -0.5960 2.2453 12 6 5.8447 -1.4101 1.6647 13 6 5.5435 -2.1614 0.5395 14 6 4.2842 -2.1070 -0.0137 15 16 3.9046 -3.0640 -1.4437 16 8 5.1302 -3.2526 -2.1375 17 8 2.7606 -2.4640 -2.0359 18 8 3.4673 -4.4400 -0.9619 19 6 2.2148 -4.4687 -0.4334 20 6 2.0296 -4.2463 0.9231 21 6 0.7568 -4.2700 1.4616 22 6 -0.3364 -4.5252 0.6498 23 6 -0.1528 -4.7486 -0.7124 24 6 1.1233 -4.7198 -1.2507 25 8 -1.3715 -4.9686 -1.2868 26 6 -2.2592 -5.2826 -0.1974 27 8 -1.6711 -4.6053 0.9289 28 1 -0.4850 0.8400 0.0004 29 1 2.8719 0.1081 2.1634 30 1 5.1299 -0.0147 3.1217 31 1 6.8352 -1.4591 2.0925 32 1 6.2992 -2.7924 0.0958 33 1 2.8804 -4.0501 1.5586 34 1 0.6145 -4.0912 2.5171 35 1 1.2680 -4.8925 -2.3070 36 1 -2.2882 -6.3584 -0.0250 37 1 -3.2596 -4.8983 -0.3958 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001660445478.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:59 Heat of formation + Delta-G solvation = -101.369978 kcal Electronic energy + Delta-G solvation = -29585.439628 eV Core-core repulsion = 25387.439290 eV Total energy + Delta-G solvation = -4198.000338 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.059 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.03852 -40.19512 -37.85597 -36.63430 -36.32611 -36.11110 -35.02659 -33.80514 -30.77202 -30.42108 -30.06453 -29.26470 -25.71807 -25.40302 -23.20438 -23.00422 -21.99415 -21.20405 -20.29963 -18.13872 -17.89093 -17.72312 -17.57719 -17.11312 -16.77257 -16.20542 -15.46807 -15.35660 -14.79419 -14.35155 -14.31712 -14.12758 -13.70556 -13.58783 -13.39773 -13.06172 -12.87706 -12.80993 -12.60954 -12.35130 -12.16224 -11.99167 -11.80912 -11.43916 -11.26385 -11.19751 -10.97690 -10.92895 -10.71715 -10.54303 -10.21472 -10.00889 -9.32736 -9.31444 -8.67680 -8.22435 -7.84397 -7.67874 -7.19506 -4.72903 0.82194 1.39775 1.64993 2.06279 2.53296 2.78836 2.99959 3.13283 3.17685 3.32117 3.59037 3.72923 3.85501 4.27388 4.53129 4.65360 4.69358 4.91922 5.01212 5.12410 5.17934 5.24597 5.37355 5.65901 5.66890 5.84309 5.96313 6.16447 6.19046 6.24453 6.36365 6.41068 6.46473 6.63410 6.75352 6.95929 7.12471 7.24758 7.29422 7.47428 7.60164 7.84612 8.22526 8.33171 8.54338 9.77022 Molecular weight = 348.06amu Principal moments of inertia in cm(-1) A = 0.011204 B = 0.006142 C = 0.004981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2498.529522 B = 4557.698525 C = 5619.729901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.761 5.761 2 C 0.099 3.901 3 Si 0.871 3.129 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.219 1.219 7 C -0.415 4.415 8 H 0.123 0.877 9 C 0.143 3.857 10 C -0.198 4.198 11 C -0.055 4.055 12 C -0.259 4.259 13 C 0.019 3.981 14 C -0.795 4.795 15 S 2.662 3.338 16 O -0.967 6.967 17 O -0.940 6.940 18 O -0.675 6.675 19 C 0.095 3.905 20 C -0.086 4.086 21 C -0.074 4.074 22 C 0.052 3.948 23 C 0.047 3.953 24 C -0.083 4.083 25 O -0.304 6.304 26 C 0.213 3.787 27 O -0.304 6.304 28 H 0.290 0.710 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.107 0.893 33 H 0.153 0.847 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.082 0.918 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.034 -7.388 3.592 8.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.382 5.382 2 C -0.127 4.127 3 Si 0.693 3.307 4 H -0.190 1.190 5 H -0.199 1.199 6 H -0.142 1.142 7 C -0.441 4.441 8 H 0.140 0.860 9 C 0.138 3.862 10 C -0.218 4.218 11 C -0.074 4.074 12 C -0.280 4.280 13 C -0.001 4.001 14 C -0.889 4.889 15 S 2.763 3.237 16 O -0.965 6.965 17 O -0.938 6.938 18 O -0.633 6.633 19 C 0.053 3.947 20 C -0.106 4.106 21 C -0.093 4.093 22 C 0.007 3.993 23 C 0.003 3.997 24 C -0.104 4.104 25 O -0.220 6.220 26 C 0.101 3.899 27 O -0.220 6.220 28 H 0.101 0.899 29 H 0.120 0.880 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.125 0.875 33 H 0.171 0.829 34 H 0.163 0.837 35 H 0.163 0.837 36 H 0.099 0.901 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.493 -7.607 2.778 8.820 hybrid contribution 0.313 1.331 0.448 1.438 sum -3.180 -6.277 3.226 7.741 Atomic orbital electron populations 1.69756 1.08483 1.30992 1.28928 1.26142 0.94427 1.01790 0.90337 0.86804 0.83806 0.79710 0.80375 1.18990 1.19933 1.14173 1.20184 0.96395 0.98938 1.28539 0.85962 1.17033 0.90452 0.88929 0.89810 1.21180 0.96614 1.05369 0.98670 1.20817 0.93414 0.95803 0.97347 1.20442 0.99039 1.06797 1.01688 1.20279 0.93247 0.93876 0.92694 1.29938 1.02385 1.29076 1.27467 1.02292 0.73735 0.72397 0.75250 1.93501 1.46143 1.84956 1.71915 1.93675 1.48823 1.74692 1.76659 1.85795 1.36385 1.59863 1.81260 1.17145 0.79114 1.06723 0.91671 1.21023 0.97951 0.98294 0.93294 1.19719 0.87842 1.01620 1.00100 1.19779 0.84298 1.02244 0.92964 1.19130 0.86638 1.03821 0.90156 1.19773 0.87348 1.02159 1.01099 1.87363 1.16605 1.86457 1.31609 1.25606 0.94370 0.97329 0.72550 1.87388 1.16649 1.75482 1.42439 0.89894 0.87989 0.88498 0.88357 0.87467 0.82894 0.83678 0.83733 0.90065 0.85299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.79 13.93 55.55 0.77 -18.01 16 2 C 0.10 2.41 5.21 -17.34 -0.09 2.32 16 3 Si 0.87 18.80 26.47 -169.99 -4.50 14.30 16 4 H -0.26 -5.85 7.11 56.52 0.40 -5.44 16 5 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.22 -4.71 5.33 56.52 0.30 -4.40 16 7 C -0.41 -10.25 6.79 -37.74 -0.26 -10.50 16 8 H 0.12 3.13 4.14 -52.49 -0.22 2.91 16 9 C 0.14 3.32 4.25 -106.82 -0.45 2.87 16 10 C -0.20 -4.30 6.71 -38.87 -0.26 -4.56 16 11 C -0.06 -1.09 10.02 -39.66 -0.40 -1.48 16 12 C -0.26 -5.07 10.05 -39.29 -0.39 -5.46 16 13 C 0.02 0.39 9.51 -39.66 -0.38 0.01 16 14 C -0.79 -17.76 5.25 -38.87 -0.20 -17.96 16 15 S 2.66 58.87 5.28 -107.50 -0.57 58.30 16 16 O -0.97 -22.70 17.36 -66.81 -1.16 -23.86 16 17 O -0.94 -22.77 12.91 -66.81 -0.86 -23.63 16 18 O -0.67 -13.27 10.16 -51.79 -0.53 -13.79 16 19 C 0.10 1.81 3.63 -39.26 -0.14 1.67 16 20 C -0.09 -1.49 7.46 -39.42 -0.29 -1.78 16 21 C -0.07 -1.21 10.05 -39.48 -0.40 -1.61 16 22 C 0.05 0.90 7.15 -39.09 -0.28 0.62 16 23 C 0.05 0.84 7.15 -39.10 -0.28 0.56 16 24 C -0.08 -1.53 9.03 -39.32 -0.36 -1.89 16 25 O -0.30 -4.89 11.40 -45.72 -0.52 -5.41 16 26 C 0.21 2.55 8.89 101.05 0.90 3.45 16 27 O -0.30 -4.73 11.41 -46.01 -0.52 -5.25 16 28 H 0.29 6.47 8.30 -40.82 -0.34 6.13 16 29 H 0.10 2.13 6.38 -52.49 -0.34 1.79 16 30 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 31 H 0.10 1.66 8.06 -52.48 -0.42 1.24 16 32 H 0.11 2.04 7.69 -52.49 -0.40 1.63 16 33 H 0.15 2.47 7.95 -52.49 -0.42 2.05 16 34 H 0.15 1.98 8.06 -52.49 -0.42 1.56 16 35 H 0.14 2.43 8.06 -52.49 -0.42 2.01 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.13 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 322.58 15.07 4.86 4.86 Total: -1.00 -30.30 322.58 -9.46 -39.76 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -3.14 Total: 6.50 kcal Atomic # 6 Polarization: -30.48 SS G_CDS: -3.28 Total: -33.76 kcal Atomic # 7 Polarization: -18.79 SS G_CDS: 0.77 Total: -18.01 kcal Atomic # 8 Polarization: -68.35 SS G_CDS: -3.60 Total: -71.94 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -4.50 Total: 14.30 kcal Atomic # 16 Polarization: 58.87 SS G_CDS: -0.57 Total: 58.30 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.30 -9.46 -39.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660445478.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.614 kcal (2) G-P(sol) polarization free energy of solvation -30.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds