Wall clock time and date at job start Wed Apr 1 2020 04:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86801 * 119.99900 * 2 1 4 4 H 1.48502 * 109.46963 * 273.30826 * 3 2 1 5 5 H 1.48494 * 109.47148 * 33.30958 * 3 2 1 6 6 H 1.48497 * 109.47251 * 153.31318 * 3 2 1 7 7 C 1.39947 * 120.00211 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99661 * 27.37472 * 7 2 1 9 9 C 1.41403 * 119.99993 * 207.37510 * 7 2 1 10 10 C 1.40737 * 120.24324 * 36.23321 * 9 7 2 11 11 C 1.37593 * 119.74019 * 180.27278 * 10 9 7 12 12 C 1.38655 * 120.25146 * 359.71093 * 11 10 9 13 13 C 1.38612 * 120.50399 * 0.02562 * 12 11 10 14 14 C 1.37646 * 120.24242 * 359.97438 * 13 12 11 15 15 S 1.76200 * 120.12219 * 180.02562 * 14 13 12 16 16 O 1.42096 * 106.40812 * 333.08052 * 15 14 13 17 17 O 1.42107 * 106.40054 * 200.15963 * 15 14 13 18 18 O 1.52207 * 107.21897 * 86.62112 * 15 14 13 19 19 C 1.35976 * 113.99713 * 74.99615 * 18 15 14 20 20 C 1.38698 * 119.98766 * 270.02030 * 19 18 15 21 21 C 1.38224 * 120.08439 * 179.75851 * 20 19 18 22 22 C 1.38528 * 120.09728 * 0.44853 * 21 20 19 23 23 C 1.39261 * 119.91830 * 359.54880 * 22 21 20 24 24 C 1.38526 * 119.88123 * 0.22982 * 23 22 21 25 25 O 1.36508 * 108.64606 * 180.24648 * 23 22 21 26 26 C 1.43990 * 105.49926 * 342.70625 * 25 23 22 27 27 O 1.36597 * 131.46104 * 179.85437 * 22 21 20 28 28 H 0.96999 * 120.00268 * 359.97438 * 1 2 3 29 29 H 1.07993 * 120.12725 * 0.02562 * 10 9 7 30 30 H 1.08001 * 119.87494 * 179.72503 * 11 10 9 31 31 H 1.08003 * 119.74604 * 180.02562 * 12 11 10 32 32 H 1.07989 * 119.87839 * 180.02562 * 13 12 11 33 33 H 1.07998 * 119.95727 * 0.02562 * 20 19 18 34 34 H 1.07995 * 119.94949 * 180.33962 * 21 20 19 35 35 H 1.08002 * 120.00573 * 180.02562 * 24 23 22 36 36 H 1.09001 * 110.56728 * 268.58054 * 26 25 23 37 37 H 1.08993 * 110.56966 * 145.70761 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4197 2.0868 -1.3978 5 1 1.4764 2.6314 0.7688 6 1 3.5730 1.4210 0.6288 7 6 2.0080 -1.2120 0.0005 8 1 1.5587 -2.0951 -0.4291 9 6 3.3032 -1.2802 0.5637 10 6 3.6188 -0.5260 1.7092 11 6 4.8841 -0.5960 2.2453 12 6 5.8447 -1.4101 1.6647 13 6 5.5435 -2.1614 0.5395 14 6 4.2842 -2.1070 -0.0137 15 16 3.9046 -3.0640 -1.4437 16 8 5.1302 -3.2526 -2.1375 17 8 2.7606 -2.4640 -2.0359 18 8 3.4673 -4.4400 -0.9619 19 6 2.2148 -4.4687 -0.4334 20 6 2.0296 -4.2463 0.9231 21 6 0.7568 -4.2700 1.4616 22 6 -0.3364 -4.5252 0.6498 23 6 -0.1528 -4.7486 -0.7124 24 6 1.1233 -4.7198 -1.2507 25 8 -1.3715 -4.9686 -1.2868 26 6 -2.2592 -5.2826 -0.1974 27 8 -1.6711 -4.6053 0.9289 28 1 -0.4850 0.8400 0.0004 29 1 2.8719 0.1081 2.1634 30 1 5.1299 -0.0147 3.1217 31 1 6.8352 -1.4591 2.0925 32 1 6.2992 -2.7924 0.0958 33 1 2.8804 -4.0501 1.5586 34 1 0.6145 -4.0912 2.5171 35 1 1.2680 -4.8925 -2.3070 36 1 -2.2882 -6.3584 -0.0250 37 1 -3.2596 -4.8983 -0.3958 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001660445478.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:58 Heat of formation + Delta-G solvation = -121.058634 kcal Electronic energy + Delta-G solvation = -29586.293393 eV Core-core repulsion = 25387.439290 eV Total energy + Delta-G solvation = -4198.854102 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.059 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.27421 -41.69074 -39.51745 -38.25515 -37.86352 -37.33559 -36.84102 -35.53278 -32.42490 -31.85978 -31.63728 -30.57728 -27.11619 -26.79216 -24.62198 -24.36387 -23.60648 -22.88416 -21.79620 -19.66452 -19.59510 -19.06558 -18.98192 -18.61247 -18.15479 -17.69944 -17.03427 -16.83551 -16.24385 -15.96019 -15.72453 -15.52314 -15.28813 -15.02979 -14.96211 -14.61166 -14.41122 -14.06492 -13.99356 -13.92634 -13.67205 -13.61628 -13.37405 -13.18453 -13.01964 -12.90061 -12.66286 -12.46920 -12.22938 -12.01045 -11.72132 -11.62619 -11.05872 -11.02163 -10.05188 -9.84228 -9.36426 -9.14970 -8.94324 -6.49971 -0.74484 0.04711 0.15441 0.38271 0.85714 1.30521 1.42453 1.46996 1.49655 1.85183 2.13020 2.32486 2.48116 2.58533 2.80296 3.32594 3.34422 3.47862 3.71971 3.79375 3.93436 4.03639 4.15066 4.24881 4.33248 4.43497 4.45042 4.70076 4.82454 4.84621 4.91919 4.99539 5.03292 5.06990 5.28289 5.32598 5.48213 5.66269 5.82999 5.95469 5.99200 6.17257 6.46849 6.62770 6.79192 8.07297 Molecular weight = 348.06amu Principal moments of inertia in cm(-1) A = 0.011204 B = 0.006142 C = 0.004981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2498.529522 B = 4557.698525 C = 5619.729901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.068 3.932 3 Si 0.907 3.093 4 H -0.279 1.279 5 H -0.256 1.256 6 H -0.215 1.215 7 C -0.446 4.446 8 H 0.106 0.894 9 C 0.142 3.858 10 C -0.217 4.217 11 C -0.048 4.048 12 C -0.245 4.245 13 C 0.002 3.998 14 C -0.800 4.800 15 S 2.673 3.327 16 O -0.987 6.987 17 O -0.967 6.967 18 O -0.666 6.666 19 C 0.070 3.930 20 C -0.084 4.084 21 C -0.076 4.076 22 C 0.052 3.948 23 C 0.037 3.963 24 C -0.100 4.100 25 O -0.320 6.320 26 C 0.202 3.798 27 O -0.313 6.313 28 H 0.296 0.704 29 H 0.107 0.893 30 H 0.135 0.865 31 H 0.134 0.866 32 H 0.123 0.877 33 H 0.163 0.837 34 H 0.172 0.828 35 H 0.148 0.852 36 H 0.120 0.880 37 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.133 -7.259 5.685 9.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.153 4.153 3 Si 0.728 3.272 4 H -0.206 1.206 5 H -0.180 1.180 6 H -0.137 1.137 7 C -0.473 4.473 8 H 0.123 0.877 9 C 0.137 3.863 10 C -0.237 4.237 11 C -0.066 4.066 12 C -0.265 4.265 13 C -0.017 4.017 14 C -0.895 4.895 15 S 2.776 3.224 16 O -0.985 6.985 17 O -0.966 6.966 18 O -0.624 6.624 19 C 0.028 3.972 20 C -0.104 4.104 21 C -0.095 4.095 22 C 0.006 3.994 23 C -0.008 4.008 24 C -0.121 4.121 25 O -0.237 6.237 26 C 0.092 3.908 27 O -0.229 6.229 28 H 0.107 0.893 29 H 0.125 0.875 30 H 0.153 0.847 31 H 0.152 0.848 32 H 0.141 0.859 33 H 0.181 0.819 34 H 0.190 0.810 35 H 0.165 0.835 36 H 0.137 0.863 37 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -2.595 -7.484 4.872 9.299 hybrid contribution 0.092 1.138 -0.144 1.150 sum -2.504 -6.346 4.728 8.300 Atomic orbital electron populations 1.69770 1.09272 1.31792 1.31375 1.26658 0.94889 1.03631 0.90127 0.86269 0.83445 0.77838 0.79647 1.20556 1.17959 1.13677 1.20141 0.97522 0.98968 1.30658 0.87672 1.17148 0.89987 0.89122 0.90055 1.21339 0.97975 1.05844 0.98518 1.21263 0.92323 0.95122 0.97903 1.20925 1.00505 1.04734 1.00365 1.20608 0.92906 0.94718 0.93499 1.29981 1.03218 1.29044 1.27235 1.01852 0.72903 0.72453 0.75241 1.93464 1.46831 1.85439 1.72759 1.93643 1.49770 1.75653 1.77499 1.85738 1.37075 1.58298 1.81335 1.17405 0.78677 1.08574 0.92506 1.21183 0.98835 0.97643 0.92736 1.20037 0.87267 1.00770 1.01379 1.19990 0.85200 1.01392 0.92800 1.19249 0.86970 1.03852 0.90740 1.19922 0.87949 1.02745 1.01461 1.87333 1.16349 1.86596 1.33387 1.26288 0.94485 0.99536 0.70478 1.87364 1.15750 1.75984 1.43842 0.89297 0.87536 0.84737 0.84818 0.85939 0.81905 0.81048 0.83462 0.86300 0.82130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -40.34 13.93 21.83 0.30 -40.04 16 2 C 0.07 3.38 5.21 85.26 0.44 3.82 16 3 Si 0.91 38.24 26.47 68.60 1.82 40.06 16 4 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 5 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 6 H -0.21 -8.74 5.33 99.48 0.53 -8.21 16 7 C -0.45 -22.34 6.79 23.46 0.16 -22.18 16 8 H 0.11 5.57 4.14 -2.91 -0.01 5.56 16 9 C 0.14 6.48 4.25 -21.29 -0.09 6.39 16 10 C -0.22 -8.89 6.71 22.73 0.15 -8.74 16 11 C -0.05 -1.68 10.02 22.22 0.22 -1.46 16 12 C -0.25 -8.51 10.05 22.46 0.23 -8.28 16 13 C 0.00 0.08 9.51 22.22 0.21 0.30 16 14 C -0.80 -35.07 5.25 22.73 0.12 -34.95 16 15 S 2.67 119.81 5.28 -56.49 -0.30 119.51 16 16 O -0.99 -46.56 17.36 -118.78 -2.06 -48.62 16 17 O -0.97 -48.53 12.91 -118.78 -1.53 -50.06 16 18 O -0.67 -26.65 10.16 -62.56 -0.64 -27.29 16 19 C 0.07 2.72 3.63 22.48 0.08 2.80 16 20 C -0.08 -2.91 7.46 22.38 0.17 -2.75 16 21 C -0.08 -2.45 10.05 22.34 0.22 -2.22 16 22 C 0.05 1.77 7.15 22.59 0.16 1.93 16 23 C 0.04 1.32 7.15 22.58 0.16 1.48 16 24 C -0.10 -3.81 9.03 22.44 0.20 -3.61 16 25 O -0.32 -10.22 11.40 -76.15 -0.87 -11.09 16 26 C 0.20 4.48 8.89 113.37 1.01 5.49 16 27 O -0.31 -9.40 11.41 -77.19 -0.88 -10.28 16 28 H 0.30 13.48 8.30 -92.71 -0.77 12.71 16 29 H 0.11 4.23 6.38 -2.91 -0.02 4.21 16 30 H 0.13 3.74 8.06 -2.91 -0.02 3.71 16 31 H 0.13 3.73 8.06 -2.91 -0.02 3.71 16 32 H 0.12 4.35 7.69 -2.92 -0.02 4.33 16 33 H 0.16 5.16 7.95 -2.91 -0.02 5.14 16 34 H 0.17 4.45 8.06 -2.91 -0.02 4.42 16 35 H 0.15 5.27 8.06 -2.91 -0.02 5.24 16 36 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.16 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -65.75 322.58 0.26 -65.50 By element: Atomic # 1 Polarization: 23.34 SS G_CDS: 0.97 Total: 24.30 kcal Atomic # 6 Polarization: -65.43 SS G_CDS: 3.45 Total: -61.98 kcal Atomic # 7 Polarization: -40.34 SS G_CDS: 0.30 Total: -40.04 kcal Atomic # 8 Polarization: -141.37 SS G_CDS: -5.98 Total: -147.35 kcal Atomic # 14 Polarization: 38.24 SS G_CDS: 1.82 Total: 40.06 kcal Atomic # 16 Polarization: 119.81 SS G_CDS: -0.30 Total: 119.51 kcal Total: -65.75 0.26 -65.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660445478.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.562 kcal (2) G-P(sol) polarization free energy of solvation -65.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds