Wall clock time and date at job start Wed Apr 1 2020 06:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46502 * 109.46850 * 114.70000 * 3 2 1 5 5 C 1.36932 * 120.00230 * 281.59646 * 4 3 2 6 6 H 1.08002 * 120.00480 * 144.43038 * 5 4 3 7 7 C 1.38811 * 119.99996 * 324.43561 * 5 4 3 8 8 N 1.31623 * 120.00437 * 155.87748 * 7 5 4 9 9 Si 1.86800 * 120.00012 * 335.87756 * 7 5 4 10 10 H 1.48504 * 109.47497 * 95.42934 * 9 7 5 11 11 H 1.48501 * 109.47189 * 215.42534 * 9 7 5 12 12 H 1.48496 * 109.47028 * 335.42707 * 9 7 5 13 13 S 1.65599 * 119.99917 * 101.60460 * 4 3 2 14 14 O 1.42098 * 106.40494 * 150.92983 * 13 4 3 15 15 O 1.42093 * 106.40489 * 18.00423 * 13 4 3 16 16 C 1.76210 * 107.21507 * 264.46790 * 13 4 3 17 17 C 1.38088 * 119.92353 * 356.02228 * 16 13 4 18 18 C 1.38050 * 120.31019 * 179.97438 * 17 16 13 19 19 C 1.39757 * 120.14836 * 359.97438 * 18 17 16 20 20 C 1.43205 * 120.07527 * 180.02562 * 19 18 17 21 21 N 7.66052 * 67.55438 * 151.20660 * 2 1 3 22 22 C 1.39341 * 119.84779 * 359.74903 * 19 18 17 23 23 C 1.39390 * 119.69232 * 0.50368 * 22 19 18 24 24 C 1.47746 * 120.07764 * 179.76857 * 23 22 19 25 25 O 1.21463 * 119.99931 * 184.04274 * 24 23 22 26 26 O 1.34708 * 119.99871 * 4.32389 * 24 23 22 27 27 C 1.45198 * 116.99887 * 179.97438 * 26 24 23 28 28 H 4.40637 * 5.51411 * 180.02562 * 4 1 2 29 29 H 1.08997 * 109.47345 * 354.70007 * 3 2 1 30 30 H 1.08997 * 109.46952 * 234.69743 * 3 2 1 31 31 H 0.96993 * 120.00298 * 180.02562 * 8 7 5 32 32 H 1.08001 * 119.84459 * 359.97438 * 17 16 13 33 33 H 1.07997 * 119.92084 * 180.02562 * 18 17 16 34 34 H 1.08001 * 120.15938 * 180.28271 * 22 19 18 35 35 H 1.09002 * 109.47044 * 179.97438 * 27 26 24 36 36 H 1.08998 * 109.47149 * 299.99573 * 27 26 24 37 37 H 1.08996 * 109.47195 * 60.00479 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.5781 -1.2549 5 6 3.1378 -0.1743 -2.3990 6 1 2.9282 0.2898 -3.3513 7 6 3.4110 -1.5338 -2.3347 8 7 2.9719 -2.3387 -3.2790 9 14 4.4020 -2.2209 -0.9081 10 1 3.4778 -2.7271 0.1383 11 1 5.2594 -3.3331 -1.3911 12 1 5.2565 -1.1490 -0.3373 13 16 3.6813 2.1406 -1.2897 14 8 4.6566 2.2013 -2.3213 15 8 3.9518 2.5012 0.0578 16 6 2.3376 3.1522 -1.8153 17 6 1.1406 2.5706 -2.1838 18 6 0.0825 3.3556 -2.5963 19 6 0.2163 4.7459 -2.6431 20 6 -0.8824 5.5587 -3.0707 21 7 -1.7509 6.2048 -3.4102 22 6 1.4195 5.3398 -2.2671 23 6 2.4853 4.5408 -1.8567 24 6 3.7665 5.1613 -1.4611 25 8 4.7171 4.4617 -1.1743 26 8 3.8786 6.5028 -1.4130 27 6 5.1666 7.0428 -1.0156 28 1 -1.0501 0.0001 0.0003 29 1 3.0098 -1.0224 0.0949 30 1 3.0090 0.5947 0.8387 31 1 3.1624 -3.2887 -3.2339 32 1 1.0316 1.4967 -2.1492 33 1 -0.8510 2.8941 -2.8828 34 1 1.5269 6.4141 -2.2969 35 1 5.1205 8.1318 -1.0188 36 1 5.4140 6.6922 -0.0137 37 1 5.9320 6.7099 -1.7166 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663550667.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:56:51 Heat of formation + Delta-G solvation = -25.776927 kcal Electronic energy + Delta-G solvation = -28654.999800 eV Core-core repulsion = 24492.570173 eV Total energy + Delta-G solvation = -4162.429626 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.066 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -42.06756 -40.40970 -38.29334 -38.06618 -37.92839 -37.59304 -36.58847 -34.26637 -33.23762 -33.10023 -32.90842 -28.84987 -28.39632 -26.17283 -25.70743 -25.28011 -22.85150 -20.50795 -20.40183 -20.18603 -19.18997 -18.78234 -18.38891 -18.09377 -17.71595 -17.52630 -17.39190 -16.59735 -16.25412 -15.80663 -15.36623 -15.26679 -15.15600 -14.89233 -14.79389 -14.70325 -14.60559 -14.26102 -14.09870 -13.93761 -13.68467 -13.19083 -13.09906 -12.98398 -12.95800 -12.87113 -12.67553 -12.48919 -12.11747 -11.99612 -11.97803 -11.87676 -11.31238 -11.10808 -10.68920 -10.66318 -10.48644 -10.21252 -8.42720 -6.05511 -1.19974 -0.54108 -0.46182 0.95719 1.21971 1.24377 1.37728 1.44376 1.45449 1.63455 1.78723 2.08478 2.26540 2.39377 2.46942 2.50590 2.72339 2.99181 3.26590 3.47269 3.66368 3.73883 3.79517 3.92217 4.06443 4.22486 4.26519 4.30595 4.35404 4.46711 4.57302 4.66629 4.69085 4.80880 4.95572 5.05482 5.26594 5.28297 5.70072 6.16581 6.20230 6.24719 6.85778 7.05030 7.12649 8.71021 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.011620 B = 0.005114 C = 0.004021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2409.013702 B = 5473.776536 C = 6962.334181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.229 4.229 3 C 0.199 3.801 4 N -0.876 5.876 5 C -0.316 4.316 6 H 0.090 0.910 7 C 0.041 3.959 8 N -0.892 5.892 9 Si 0.894 3.106 10 H -0.245 1.245 11 H -0.284 1.284 12 H -0.267 1.267 13 S 2.674 3.326 14 O -0.981 6.981 15 O -0.989 6.989 16 C -0.595 4.595 17 C -0.037 4.037 18 C -0.028 4.028 19 C 0.015 3.985 20 C 0.282 3.718 21 N -0.423 5.423 22 C -0.011 4.011 23 C -0.061 4.061 24 C 0.493 3.507 25 O -0.522 6.522 26 O -0.333 6.333 27 C 0.022 3.978 28 H 0.259 0.741 29 H 0.077 0.923 30 H 0.113 0.887 31 H 0.278 0.722 32 H 0.163 0.837 33 H 0.190 0.810 34 H 0.189 0.811 35 H 0.152 0.848 36 H 0.065 0.935 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.748 14.276 5.076 16.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.231 4.231 3 C 0.074 3.926 4 N -0.709 5.709 5 C -0.448 4.448 6 H 0.108 0.892 7 C -0.165 4.165 8 N -0.530 5.530 9 Si 0.720 3.280 10 H -0.171 1.171 11 H -0.211 1.211 12 H -0.192 1.192 13 S 2.770 3.230 14 O -0.971 6.971 15 O -0.979 6.979 16 C -0.682 4.682 17 C -0.056 4.056 18 C -0.049 4.049 19 C 0.011 3.989 20 C -0.034 4.034 21 N -0.098 5.098 22 C -0.032 4.032 23 C -0.064 4.064 24 C 0.339 3.661 25 O -0.414 6.414 26 O -0.248 6.248 27 C -0.071 4.071 28 H 0.275 0.725 29 H 0.094 0.906 30 H 0.131 0.869 31 H 0.087 0.913 32 H 0.180 0.820 33 H 0.207 0.793 34 H 0.206 0.794 35 H 0.170 0.830 36 H 0.084 0.916 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.908 15.335 4.779 17.484 hybrid contribution 0.882 -1.030 0.327 1.394 sum -6.026 14.305 5.106 16.341 Atomic orbital electron populations 1.25653 0.96235 0.98681 0.98014 1.23559 0.94898 1.02458 1.02229 1.18610 0.86178 1.00467 0.87314 1.53251 1.75745 1.27845 1.14028 1.18439 1.48863 0.91721 0.85732 0.89218 1.25672 0.95776 0.96405 0.98683 1.69887 1.41944 1.04956 1.36243 0.86634 0.80922 0.78957 0.81479 1.17092 1.21076 1.19196 1.02794 0.73888 0.73104 0.73251 1.93446 1.56796 1.86590 1.60302 1.93419 1.83666 1.83858 1.36923 1.31260 1.18573 1.06853 1.11534 1.21302 0.89712 1.02402 0.92167 1.21954 1.00052 0.91035 0.91817 1.15957 0.89261 0.91721 1.01919 1.24996 0.92385 0.92789 0.93209 1.81265 1.10621 1.09088 1.08849 1.21708 0.88601 1.02007 0.90896 1.18397 0.92825 0.90940 1.04223 1.21479 0.87834 0.82787 0.74023 1.90894 1.40974 1.63455 1.46028 1.86470 1.39847 1.19249 1.79252 1.23831 0.80735 1.01509 1.01013 0.72475 0.90602 0.86892 0.91260 0.81996 0.79311 0.79352 0.83011 0.91635 0.91676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.53 19.09 74.32 1.42 -3.11 16 2 C -0.23 -8.08 12.40 31.13 0.39 -7.69 16 3 C 0.20 8.19 5.32 84.58 0.45 8.64 16 4 N -0.88 -40.58 1.55 -352.51 -0.55 -41.13 16 5 C -0.32 -16.35 8.63 84.03 0.73 -15.62 16 6 H 0.09 4.89 8.06 -2.91 -0.02 4.87 16 7 C 0.04 2.17 5.31 84.86 0.45 2.62 16 8 N -0.89 -48.98 13.97 21.65 0.30 -48.68 16 9 Si 0.89 41.29 25.07 68.60 1.72 43.01 16 10 H -0.25 -10.21 6.69 99.48 0.67 -9.54 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 12 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 13 S 2.67 123.93 3.90 -56.49 -0.22 123.71 16 14 O -0.98 -52.79 16.14 -119.55 -1.93 -54.72 16 15 O -0.99 -47.23 14.81 -119.08 -1.76 -48.99 16 16 C -0.59 -21.10 5.86 22.59 0.13 -20.96 16 17 C -0.04 -1.07 9.54 22.19 0.21 -0.86 16 18 C -0.03 -0.54 9.75 22.59 0.22 -0.32 16 19 C 0.01 0.27 5.73 -21.40 -0.12 0.15 16 20 C 0.28 5.10 15.32 88.35 1.35 6.45 16 21 N -0.42 -9.34 18.53 18.99 0.35 -8.99 16 22 C -0.01 -0.23 9.32 22.81 0.21 -0.01 16 23 C -0.06 -1.85 5.87 -20.13 -0.12 -1.97 16 24 C 0.49 16.38 7.84 70.34 0.55 16.93 16 25 O -0.52 -22.16 11.55 30.16 0.35 -21.81 16 26 O -0.33 -7.93 9.82 -56.18 -0.55 -8.48 16 27 C 0.02 0.39 10.56 113.37 1.20 1.58 16 28 H 0.26 4.09 7.80 -4.41 -0.03 4.06 16 29 H 0.08 3.23 2.77 -2.39 -0.01 3.23 16 30 H 0.11 4.31 6.76 -2.39 -0.02 4.30 16 31 H 0.28 14.27 8.31 -92.71 -0.77 13.50 16 32 H 0.16 5.10 5.32 -2.91 -0.02 5.08 16 33 H 0.19 2.19 8.06 -2.91 -0.02 2.17 16 34 H 0.19 2.50 7.61 -2.91 -0.02 2.47 16 35 H 0.15 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.06 1.26 8.13 -2.39 -0.02 1.24 16 37 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -76.40 345.88 5.89 -70.51 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: 1.11 Total: 9.73 kcal Atomic # 6 Polarization: -21.24 SS G_CDS: 7.07 Total: -14.17 kcal Atomic # 7 Polarization: -98.90 SS G_CDS: 0.11 Total: -98.79 kcal Atomic # 8 Polarization: -130.11 SS G_CDS: -3.90 Total: -134.00 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 1.72 Total: 43.01 kcal Atomic # 16 Polarization: 123.93 SS G_CDS: -0.22 Total: 123.71 kcal Total: -76.40 5.89 -70.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663550667.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.737 kcal (2) G-P(sol) polarization free energy of solvation -76.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds