Wall clock time and date at job start Wed Apr 1 2020 05:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46496 * 120.00596 * 2 1 4 4 C 1.52998 * 109.47171 * 270.00124 * 3 2 1 5 5 N 1.46906 * 109.47020 * 179.97438 * 4 3 2 6 6 C 1.46902 * 110.99573 * 179.97438 * 5 4 3 7 7 C 1.50707 * 109.46656 * 179.97438 * 6 5 4 8 8 S 1.75880 * 125.20323 * 270.02311 * 7 6 5 9 9 C 1.75882 * 90.97930 * 179.97438 * 8 7 6 10 10 C 1.33404 * 109.61140 * 0.02562 * 9 8 7 11 11 C 1.33441 * 125.19386 * 89.71969 * 7 6 5 12 12 Cl 1.73598 * 122.55267 * 0.02562 * 11 7 6 13 13 C 1.34781 * 119.99985 * 180.02562 * 2 1 3 14 14 O 1.21279 * 120.00451 * 180.02562 * 13 2 1 15 15 C 1.50706 * 119.99666 * 0.02562 * 13 2 1 16 16 S 1.80996 * 109.47132 * 180.02562 * 15 13 2 17 17 C 1.76195 * 100.00318 * 179.97438 * 16 15 13 18 18 H 1.07996 * 119.99613 * 359.97438 * 17 16 15 19 19 C 1.38800 * 120.00054 * 179.97438 * 17 16 15 20 20 N 1.31624 * 120.00360 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99565 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.46943 * 90.00254 * 21 19 17 23 23 H 1.48505 * 109.46468 * 209.99897 * 21 19 17 24 24 H 1.48495 * 109.47151 * 329.99834 * 21 19 17 25 25 H 1.08999 * 109.47105 * 89.99368 * 1 2 3 26 26 H 1.08995 * 109.47455 * 209.99951 * 1 2 3 27 27 H 1.09000 * 109.46963 * 330.00420 * 1 2 3 28 28 H 1.08995 * 109.47879 * 149.99519 * 3 2 1 29 29 H 1.09008 * 109.46699 * 30.00069 * 3 2 1 30 30 H 1.09002 * 109.47142 * 59.99877 * 4 3 2 31 31 H 1.09000 * 109.46991 * 299.99621 * 4 3 2 32 32 H 1.00896 * 111.00309 * 56.04370 * 5 4 3 33 33 H 1.08990 * 109.47358 * 299.99539 * 6 5 4 34 34 H 1.09004 * 109.47457 * 60.00221 * 6 5 4 35 35 H 1.08006 * 125.19536 * 179.97438 * 9 8 7 36 36 H 1.07995 * 122.54713 * 180.02562 * 10 9 8 37 37 H 1.09000 * 109.46861 * 299.99789 * 15 13 2 38 38 H 1.08992 * 109.47199 * 59.99818 * 15 13 2 39 39 H 0.96994 * 120.00328 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4526 1.7103 -1.4425 5 7 3.1867 2.9828 -1.4424 6 6 3.4505 3.4383 -2.8139 7 6 4.2028 4.7436 -2.7736 8 16 3.4637 6.3394 -2.7470 9 6 5.0467 7.1049 -2.7071 10 6 5.9971 6.1688 -2.7160 11 6 5.5314 4.8650 -2.7470 12 17 6.5951 3.4931 -2.7561 13 6 2.1389 -1.1672 -0.0005 14 8 3.3517 -1.1673 -0.0001 15 6 1.3853 -2.4723 -0.0017 16 16 2.5614 -3.8481 -0.0014 17 6 1.4413 -5.2083 -0.0021 18 1 0.3761 -5.0305 -0.0021 19 6 1.9280 -6.5081 -0.0026 20 7 3.2263 -6.7248 -0.0031 21 14 0.7404 -7.9501 -0.0041 22 1 0.4264 -8.3313 -1.4045 23 1 1.3614 -9.1034 0.6956 24 1 -0.5106 -7.5617 0.6956 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 3.1499 1.1383 0.5139 29 1 1.6085 2.0283 0.5139 30 1 1.5002 1.8407 -1.9563 31 1 3.0417 0.9506 -1.9563 32 1 4.0441 2.9056 -0.9162 33 1 4.0470 2.6908 -3.3367 34 1 2.5052 3.5802 -3.3378 35 1 5.2225 8.1702 -2.6803 36 1 7.0497 6.4094 -2.6953 37 1 0.7583 -2.5306 0.8880 38 1 0.7590 -2.5294 -0.8919 39 1 3.5664 -7.6332 -0.0031 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663825029.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:37 Heat of formation + Delta-G solvation = -4.194978 kcal Electronic energy + Delta-G solvation = -22228.307099 eV Core-core repulsion = 18642.966453 eV Total energy + Delta-G solvation = -3585.340647 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 348.047 amu Computer time = 3.07 seconds Orbital eigenvalues (eV) -39.53755 -38.80814 -36.70777 -36.28437 -35.09543 -32.43472 -31.74060 -29.74725 -27.97849 -26.47438 -25.55443 -25.12239 -23.14344 -22.38767 -19.82714 -19.22989 -17.89566 -17.65515 -16.66785 -16.33014 -16.20963 -15.74145 -15.33116 -14.86545 -14.80517 -14.16067 -13.97302 -13.90315 -13.67358 -13.55607 -13.24963 -12.88619 -12.68539 -12.51983 -12.44327 -12.15166 -12.10733 -11.77737 -11.68240 -11.42239 -11.13623 -11.10885 -11.06909 -11.02705 -10.75976 -9.81217 -9.40870 -9.21389 -9.07165 -8.81656 -8.74051 -8.54814 -8.23160 -6.50824 -6.22067 -3.92784 0.41342 0.92247 1.38318 2.06141 2.24548 2.89514 3.03846 3.21828 3.24990 3.29686 3.56665 4.04260 4.19830 4.34270 4.63398 4.72477 4.80408 4.97855 5.10752 5.12335 5.13503 5.20779 5.27361 5.36896 5.42857 5.47278 5.56339 5.59263 5.68869 5.75246 5.80963 5.87713 5.93566 6.12756 6.49076 6.70366 7.02761 7.51224 7.59134 8.34669 8.54075 9.23145 10.85348 Molecular weight = 348.05amu Principal moments of inertia in cm(-1) A = 0.021832 B = 0.001863 C = 0.001754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.209374 B =15026.435726 C =15957.645898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.624 5.624 3 C 0.122 3.878 4 C 0.043 3.957 5 N -0.680 5.680 6 C 0.126 3.874 7 C -0.169 4.169 8 S 0.164 5.836 9 C -0.211 4.211 10 C -0.128 4.128 11 C -0.052 4.052 12 Cl -0.045 7.045 13 C 0.532 3.468 14 O -0.515 6.515 15 C -0.150 4.150 16 S -0.063 6.063 17 C -0.535 4.535 18 H 0.072 0.928 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 H 0.053 0.947 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.042 0.958 32 H 0.347 0.653 33 H 0.059 0.941 34 H 0.087 0.913 35 H 0.172 0.828 36 H 0.149 0.851 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.579 29.357 -5.645 29.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.360 5.360 3 C -0.002 4.002 4 C -0.087 4.087 5 N -0.312 5.312 6 C -0.004 4.004 7 C -0.288 4.288 8 S 0.427 5.573 9 C -0.347 4.347 10 C -0.159 4.159 11 C -0.092 4.092 12 Cl -0.017 7.017 13 C 0.320 3.680 14 O -0.389 6.389 15 C -0.301 4.301 16 S 0.164 5.836 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.203 1.203 23 H -0.207 1.207 24 H -0.197 1.197 25 H 0.072 0.928 26 H 0.094 0.906 27 H 0.088 0.912 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.092 0.908 31 H 0.060 0.940 32 H 0.165 0.835 33 H 0.077 0.923 34 H 0.105 0.895 35 H 0.190 0.810 36 H 0.166 0.834 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.608 30.014 -5.573 30.570 hybrid contribution 0.064 -2.054 -0.319 2.080 sum -1.544 27.960 -5.892 28.616 Atomic orbital electron populations 1.21783 0.79488 1.03213 1.01740 1.47818 1.06926 1.05547 1.75750 1.21251 0.98470 0.84740 0.95759 1.22355 0.98696 0.89338 0.98337 1.60521 1.27536 1.30641 1.12526 1.20359 0.98813 0.89912 0.91321 1.24335 0.95294 1.00061 1.09127 1.84413 1.07109 0.94890 1.70855 1.25609 0.95736 1.03664 1.09707 1.19898 1.01592 0.90053 1.04354 1.19867 0.90303 0.90002 1.09057 1.98399 1.64619 1.41626 1.97020 1.20384 0.87958 0.84624 0.75027 1.90694 1.13746 1.86806 1.47633 1.23557 1.04542 0.97220 1.04733 1.85401 1.08104 0.93381 1.96705 1.22855 0.94301 0.92198 1.58958 0.90934 1.24996 0.95677 0.98387 0.94548 1.70014 1.11747 1.21660 1.46840 0.86168 0.80272 0.80721 0.78344 1.20279 1.20743 1.19682 0.92836 0.90611 0.91249 0.89945 0.89955 0.90766 0.93990 0.83489 0.92339 0.89470 0.81048 0.83364 0.89207 0.89279 0.92183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.82 10.28 59.85 0.62 1.44 16 2 N -0.62 -8.65 2.87 -181.58 -0.52 -9.17 16 3 C 0.12 1.45 5.71 -4.05 -0.02 1.43 16 4 C 0.04 0.48 6.01 -3.82 -0.02 0.45 16 5 N -0.68 -6.77 6.49 -115.05 -0.75 -7.51 16 6 C 0.13 1.16 5.87 -4.97 -0.03 1.13 16 7 C -0.17 -1.50 6.02 -35.98 -0.22 -1.71 16 8 S 0.16 1.16 23.33 -107.50 -2.51 -1.35 16 9 C -0.21 -1.32 11.23 29.04 0.33 -0.99 16 10 C -0.13 -0.96 10.07 -41.18 -0.41 -1.38 16 11 C -0.05 -0.47 6.27 -41.17 -0.26 -0.73 16 12 Cl -0.05 -0.46 28.17 -51.86 -1.46 -1.92 16 13 C 0.53 10.07 7.69 -10.98 -0.08 9.98 16 14 O -0.51 -11.70 15.44 5.56 0.09 -11.61 16 15 C -0.15 -3.04 4.71 36.01 0.17 -2.87 16 16 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 17 C -0.53 -15.24 9.50 30.94 0.29 -14.94 16 18 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 19 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 20 N -0.87 -26.22 13.22 55.49 0.73 -25.48 16 21 Si 0.92 21.40 29.55 -169.99 -5.02 16.37 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 24 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.08 0.79 6.44 -51.93 -0.33 0.45 16 27 H 0.07 0.53 7.89 -51.93 -0.41 0.12 16 28 H 0.08 1.14 7.42 -51.93 -0.39 0.75 16 29 H 0.08 0.80 7.89 -51.92 -0.41 0.39 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.35 3.64 8.72 -39.29 -0.34 3.30 16 33 H 0.06 0.59 7.52 -51.93 -0.39 0.20 16 34 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.17 0.62 8.06 -52.48 -0.42 0.20 16 36 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 37 H 0.09 1.68 7.40 -51.91 -0.38 1.30 16 38 H 0.09 1.68 8.11 -51.92 -0.42 1.26 16 39 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 376.02 15.07 5.67 5.67 Total: -1.00 -33.93 376.02 -10.89 -44.82 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -5.16 Total: 0.30 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: 0.26 Total: -6.20 kcal Atomic # 7 Polarization: -41.63 SS G_CDS: -0.53 Total: -42.16 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.09 Total: -11.61 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -0.55 SS G_CDS: -4.72 Total: -5.27 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -1.46 Total: -1.92 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.93 -10.89 -44.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663825029.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.621 kcal (2) G-P(sol) polarization free energy of solvation -33.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.07 seconds