Wall clock time and date at job start Wed Apr 1 2020 05:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46496 * 120.00596 * 2 1 4 4 C 1.52998 * 109.47171 * 270.00124 * 3 2 1 5 5 N 1.46906 * 109.47020 * 179.97438 * 4 3 2 6 6 C 1.46902 * 110.99573 * 179.97438 * 5 4 3 7 7 C 1.50707 * 109.46656 * 179.97438 * 6 5 4 8 8 S 1.75880 * 125.20323 * 270.02311 * 7 6 5 9 9 C 1.75882 * 90.97930 * 179.97438 * 8 7 6 10 10 C 1.33404 * 109.61140 * 0.02562 * 9 8 7 11 11 C 1.33441 * 125.19386 * 89.71969 * 7 6 5 12 12 Cl 1.73598 * 122.55267 * 0.02562 * 11 7 6 13 13 C 1.34781 * 119.99985 * 180.02562 * 2 1 3 14 14 O 1.21279 * 120.00451 * 180.02562 * 13 2 1 15 15 C 1.50706 * 119.99666 * 0.02562 * 13 2 1 16 16 S 1.80996 * 109.47132 * 180.02562 * 15 13 2 17 17 C 1.76195 * 100.00318 * 179.97438 * 16 15 13 18 18 H 1.07996 * 119.99613 * 359.97438 * 17 16 15 19 19 C 1.38800 * 120.00054 * 179.97438 * 17 16 15 20 20 N 1.31624 * 120.00360 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99565 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.46943 * 90.00254 * 21 19 17 23 23 H 1.48505 * 109.46468 * 209.99897 * 21 19 17 24 24 H 1.48495 * 109.47151 * 329.99834 * 21 19 17 25 25 H 1.08999 * 109.47105 * 89.99368 * 1 2 3 26 26 H 1.08995 * 109.47455 * 209.99951 * 1 2 3 27 27 H 1.09000 * 109.46963 * 330.00420 * 1 2 3 28 28 H 1.08995 * 109.47879 * 149.99519 * 3 2 1 29 29 H 1.09008 * 109.46699 * 30.00069 * 3 2 1 30 30 H 1.09002 * 109.47142 * 59.99877 * 4 3 2 31 31 H 1.09000 * 109.46991 * 299.99621 * 4 3 2 32 32 H 1.00896 * 111.00309 * 56.04370 * 5 4 3 33 33 H 1.08990 * 109.47358 * 299.99539 * 6 5 4 34 34 H 1.09004 * 109.47457 * 60.00221 * 6 5 4 35 35 H 1.08006 * 125.19536 * 179.97438 * 9 8 7 36 36 H 1.07995 * 122.54713 * 180.02562 * 10 9 8 37 37 H 1.09000 * 109.46861 * 299.99789 * 15 13 2 38 38 H 1.08992 * 109.47199 * 59.99818 * 15 13 2 39 39 H 0.96994 * 120.00328 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4526 1.7103 -1.4425 5 7 3.1867 2.9828 -1.4424 6 6 3.4505 3.4383 -2.8139 7 6 4.2028 4.7436 -2.7736 8 16 3.4637 6.3394 -2.7470 9 6 5.0467 7.1049 -2.7071 10 6 5.9971 6.1688 -2.7160 11 6 5.5314 4.8650 -2.7470 12 17 6.5951 3.4931 -2.7561 13 6 2.1389 -1.1672 -0.0005 14 8 3.3517 -1.1673 -0.0001 15 6 1.3853 -2.4723 -0.0017 16 16 2.5614 -3.8481 -0.0014 17 6 1.4413 -5.2083 -0.0021 18 1 0.3761 -5.0305 -0.0021 19 6 1.9280 -6.5081 -0.0026 20 7 3.2263 -6.7248 -0.0031 21 14 0.7404 -7.9501 -0.0041 22 1 0.4264 -8.3313 -1.4045 23 1 1.3614 -9.1034 0.6956 24 1 -0.5106 -7.5617 0.6956 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 3.1499 1.1383 0.5139 29 1 1.6085 2.0283 0.5139 30 1 1.5002 1.8407 -1.9563 31 1 3.0417 0.9506 -1.9563 32 1 4.0441 2.9056 -0.9162 33 1 4.0470 2.6908 -3.3367 34 1 2.5052 3.5802 -3.3378 35 1 5.2225 8.1702 -2.6803 36 1 7.0497 6.4094 -2.6953 37 1 0.7583 -2.5306 0.8880 38 1 0.7590 -2.5294 -0.8919 39 1 3.5664 -7.6332 -0.0031 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663825029.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:19 Heat of formation + Delta-G solvation = -26.637030 kcal Electronic energy + Delta-G solvation = -22229.280260 eV Core-core repulsion = 18642.966453 eV Total energy + Delta-G solvation = -3586.313807 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 348.047 amu Computer time = 18.46 seconds Orbital eigenvalues (eV) -40.88875 -39.46977 -37.66402 -37.02307 -36.22087 -34.59399 -32.66778 -30.95348 -29.01239 -27.70125 -27.35580 -26.00178 -23.84461 -23.34196 -20.67670 -20.41560 -19.55406 -18.54203 -18.04899 -17.34439 -17.01413 -16.88951 -16.76137 -16.45199 -16.06941 -15.52171 -15.09529 -14.71563 -14.49741 -14.44817 -14.33588 -14.23901 -14.04163 -13.57205 -13.34046 -13.22994 -13.16535 -12.94694 -12.90063 -12.74142 -12.61394 -12.41045 -12.11592 -12.01809 -11.78698 -11.71677 -11.15032 -10.92980 -10.27536 -9.86975 -9.76767 -9.54777 -9.34979 -8.68648 -8.35322 -6.13946 -0.18520 0.30709 0.83935 1.24932 1.42076 1.43962 1.47325 1.55403 1.56753 1.58138 2.08792 2.26883 2.98767 3.16083 3.29201 3.64078 3.74323 3.93920 4.05591 4.14219 4.21616 4.25295 4.33973 4.46490 4.46990 4.52722 4.60374 4.70792 4.79379 4.82543 4.92625 4.97979 5.05536 5.17605 5.40939 5.49847 5.78090 6.13331 6.18942 6.26321 7.05733 7.13185 8.73926 Molecular weight = 348.05amu Principal moments of inertia in cm(-1) A = 0.021832 B = 0.001863 C = 0.001754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.209374 B =15026.435726 C =15957.645898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.609 5.609 3 C 0.122 3.878 4 C 0.054 3.946 5 N -0.672 5.672 6 C 0.128 3.872 7 C -0.190 4.190 8 S 0.188 5.812 9 C -0.197 4.197 10 C -0.147 4.147 11 C -0.060 4.060 12 Cl -0.065 7.065 13 C 0.529 3.471 14 O -0.565 6.565 15 C -0.123 4.123 16 S -0.156 6.156 17 C -0.545 4.545 18 H 0.084 0.916 19 C 0.012 3.988 20 N -0.912 5.912 21 Si 1.000 3.000 22 H -0.268 1.268 23 H -0.278 1.278 24 H -0.256 1.256 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.103 0.897 28 H 0.058 0.942 29 H 0.117 0.883 30 H 0.092 0.908 31 H 0.008 0.992 32 H 0.342 0.658 33 H 0.043 0.957 34 H 0.099 0.901 35 H 0.202 0.798 36 H 0.160 0.840 37 H 0.109 0.891 38 H 0.107 0.893 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.563 31.392 -5.679 32.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.343 5.343 3 C -0.001 4.001 4 C -0.076 4.076 5 N -0.303 5.303 6 C -0.002 4.002 7 C -0.309 4.309 8 S 0.452 5.548 9 C -0.333 4.333 10 C -0.176 4.176 11 C -0.101 4.101 12 Cl -0.036 7.036 13 C 0.316 3.684 14 O -0.444 6.444 15 C -0.274 4.274 16 S 0.071 5.929 17 C -0.692 4.692 18 H 0.102 0.898 19 C -0.193 4.193 20 N -0.548 5.548 21 Si 0.821 3.179 22 H -0.193 1.193 23 H -0.203 1.203 24 H -0.180 1.180 25 H 0.089 0.911 26 H 0.093 0.907 27 H 0.122 0.878 28 H 0.077 0.923 29 H 0.135 0.865 30 H 0.110 0.890 31 H 0.026 0.974 32 H 0.159 0.841 33 H 0.061 0.939 34 H 0.117 0.883 35 H 0.219 0.781 36 H 0.178 0.822 37 H 0.127 0.873 38 H 0.125 0.875 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.644 32.104 -5.613 32.921 hybrid contribution 0.937 -2.461 -0.318 2.652 sum -3.707 29.643 -5.931 30.458 Atomic orbital electron populations 1.22135 0.76551 1.04965 1.03414 1.47805 1.08676 1.04490 1.73358 1.21392 0.97951 0.84326 0.96399 1.22210 0.99016 0.88926 0.97468 1.60577 1.27203 1.29482 1.13021 1.20336 0.99222 0.89987 0.90663 1.24377 0.95440 1.00918 1.10177 1.84309 1.07165 0.93250 1.70113 1.26002 0.94911 1.04897 1.07508 1.20048 1.02647 0.89519 1.05426 1.20110 0.90293 0.90106 1.09627 1.98391 1.65278 1.42850 1.97128 1.20199 0.87297 0.85623 0.75245 1.90680 1.15751 1.87519 1.50416 1.23374 1.02661 0.94923 1.06422 1.85607 1.12827 0.97455 1.97035 1.23191 0.94627 0.92570 1.58847 0.89812 1.26156 0.97623 1.01756 0.93744 1.70186 1.14165 1.22458 1.48020 0.84939 0.77902 0.76250 0.78801 1.19312 1.20342 1.18026 0.91139 0.90678 0.87798 0.92315 0.86525 0.88977 0.97398 0.84065 0.93864 0.88285 0.78104 0.82248 0.87286 0.87476 0.92019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.18 10.28 127.77 1.31 2.49 16 2 N -0.61 -15.88 2.87 -846.77 -2.43 -18.31 16 3 C 0.12 2.76 5.71 86.38 0.49 3.25 16 4 C 0.05 1.17 6.01 86.30 0.52 1.68 16 5 N -0.67 -12.96 6.49 -517.91 -3.36 -16.32 16 6 C 0.13 2.31 5.87 85.56 0.50 2.81 16 7 C -0.19 -3.22 6.02 24.60 0.15 -3.08 16 8 S 0.19 2.25 23.33 -56.49 -1.32 0.94 16 9 C -0.20 -1.98 11.23 66.73 0.75 -1.23 16 10 C -0.15 -2.01 10.07 21.23 0.21 -1.80 16 11 C -0.06 -1.09 6.27 21.24 0.13 -0.95 16 12 Cl -0.06 -1.37 28.17 -2.72 -0.08 -1.45 16 13 C 0.53 20.08 7.69 87.66 0.67 20.75 16 14 O -0.57 -26.83 15.44 -3.03 -0.05 -26.87 16 15 C -0.12 -4.94 4.71 71.24 0.34 -4.60 16 16 S -0.16 -8.81 20.57 -56.49 -1.16 -9.97 16 17 C -0.54 -31.24 9.50 67.95 0.65 -30.60 16 18 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 19 C 0.01 0.68 5.49 84.86 0.47 1.14 16 20 N -0.91 -56.50 13.22 21.65 0.29 -56.21 16 21 Si 1.00 43.68 29.55 68.60 2.03 45.71 16 22 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 23 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 24 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 25 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.07 1.30 6.44 -2.39 -0.02 1.29 16 27 H 0.10 1.08 7.89 -2.39 -0.02 1.07 16 28 H 0.06 1.64 7.42 -2.39 -0.02 1.62 16 29 H 0.12 1.88 7.89 -2.38 -0.02 1.86 16 30 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.01 0.22 8.14 -2.39 -0.02 0.20 16 32 H 0.34 7.29 8.72 -89.70 -0.78 6.51 16 33 H 0.04 0.91 7.52 -2.39 -0.02 0.89 16 34 H 0.10 1.51 8.14 -2.38 -0.02 1.50 16 35 H 0.20 0.74 8.06 -2.91 -0.02 0.71 16 36 H 0.16 1.74 8.06 -2.91 -0.02 1.71 16 37 H 0.11 3.95 7.40 -2.40 -0.02 3.93 16 38 H 0.11 3.90 8.11 -2.40 -0.02 3.88 16 39 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -77.45 376.02 0.40 -77.05 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: 0.29 Total: 15.57 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: 6.19 Total: -10.12 kcal Atomic # 7 Polarization: -85.34 SS G_CDS: -5.51 Total: -90.85 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: -0.05 Total: -26.87 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: -6.56 SS G_CDS: -2.48 Total: -9.04 kcal Atomic # 17 Polarization: -1.37 SS G_CDS: -0.08 Total: -1.45 kcal Total: -77.45 0.40 -77.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663825029.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.414 kcal (2) G-P(sol) polarization free energy of solvation -77.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 18.46 seconds