Wall clock time and date at job start Wed Apr 1 2020 04:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 N 1.41593 * 113.99939 * 2 1 4 4 C 1.34783 * 119.99922 * 180.02562 * 3 2 1 5 5 O 1.21276 * 119.99934 * 359.97438 * 4 3 2 6 6 C 1.50693 * 119.99843 * 180.02562 * 4 3 2 7 7 N 1.46504 * 109.47216 * 179.97438 * 6 4 3 8 8 S 1.65596 * 120.00388 * 164.99635 * 7 6 4 9 9 O 1.42094 * 106.40332 * 311.46455 * 8 7 6 10 10 O 1.42097 * 106.40324 * 178.53879 * 8 7 6 11 11 C 1.76209 * 107.21484 * 64.99992 * 8 7 6 12 12 C 1.38638 * 119.75122 * 115.25905 * 11 8 7 13 13 C 1.37606 * 120.25721 * 180.29818 * 12 11 8 14 14 C 1.40744 * 119.76944 * 359.72232 * 13 12 11 15 15 C 1.41397 * 120.23414 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00269 * 150.20771 * 15 14 13 17 17 C 1.39944 * 120.00151 * 330.20047 * 15 14 13 18 18 N 1.30829 * 120.00447 * 161.74049 * 17 15 14 19 19 Si 1.86800 * 119.99955 * 341.73918 * 17 15 14 20 20 H 1.48503 * 109.47260 * 95.41137 * 19 17 15 21 21 H 1.48499 * 109.47274 * 215.41340 * 19 17 15 22 22 H 1.48503 * 109.47017 * 335.41038 * 19 17 15 23 23 C 1.40676 * 119.52867 * 359.97438 * 14 13 12 24 24 C 1.37757 * 119.72807 * 0.02562 * 23 14 13 25 25 Cl 1.73603 * 119.88434 * 179.97438 * 24 23 14 26 26 H 1.08998 * 109.47403 * 299.99881 * 1 2 3 27 27 H 1.08999 * 109.47176 * 60.00190 * 1 2 3 28 28 H 1.09006 * 109.47447 * 179.97438 * 1 2 3 29 29 H 0.97000 * 120.00250 * 0.02562 * 3 2 1 30 30 H 1.09003 * 109.47672 * 59.99708 * 6 4 3 31 31 H 1.09002 * 109.47568 * 299.99716 * 6 4 3 32 32 H 0.97005 * 119.99530 * 344.99609 * 7 6 4 33 33 H 1.07997 * 119.87331 * 359.97438 * 12 11 8 34 34 H 1.08002 * 120.11652 * 179.69763 * 13 12 11 35 35 H 0.96995 * 120.00087 * 180.02562 * 18 17 15 36 36 H 1.07994 * 120.13291 * 180.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0049 1.2935 0.0000 4 6 3.3453 1.4344 -0.0005 5 8 4.0582 0.4532 -0.0005 6 6 3.9582 2.8111 0.0001 7 7 5.4187 2.6954 -0.0001 8 16 6.3535 4.0111 -0.3708 9 8 5.8143 4.5631 -1.5639 10 8 7.7052 3.5895 -0.2510 11 6 6.0921 5.2096 0.8942 12 6 7.1407 5.5725 1.7254 13 6 6.9467 6.5029 2.7205 14 6 5.6794 7.0913 2.8896 15 6 5.4692 8.0487 3.9087 16 1 4.7316 8.8262 3.7753 17 6 6.2168 7.9887 5.0902 18 7 6.2967 9.0378 5.8678 19 14 7.1006 6.4107 5.5571 20 1 8.5109 6.4783 5.0968 21 1 7.0689 6.2434 7.0323 22 1 6.4247 5.2557 4.9134 23 6 4.6236 6.7208 2.0369 24 6 4.8402 5.7874 1.0473 25 17 3.5401 5.3268 -0.0069 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.4347 2.0783 0.0004 30 1 3.6370 3.3515 0.8905 31 1 3.6362 3.3526 -0.8894 32 1 5.8381 1.8481 0.2170 33 1 8.1123 5.1195 1.5946 34 1 7.7639 6.7803 3.3698 35 1 6.8152 8.9963 6.6865 36 1 3.6474 7.1665 2.1577 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665890718.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:06 Heat of formation + Delta-G solvation = -77.165461 kcal Electronic energy + Delta-G solvation = -26152.406582 eV Core-core repulsion = 21985.315732 eV Total energy + Delta-G solvation = -4167.090850 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.042 amu Computer time = 3.46 seconds Orbital eigenvalues (eV) -39.74607 -38.26904 -37.48950 -36.80262 -36.17760 -35.31167 -34.52048 -34.15688 -32.61873 -31.09243 -29.97521 -27.62853 -26.24479 -26.05300 -22.16869 -21.62708 -21.22740 -19.29486 -18.64747 -18.08805 -17.96685 -17.22233 -16.38227 -16.18322 -16.00809 -15.62085 -15.15615 -14.90329 -14.75905 -14.57526 -14.17827 -13.84323 -13.49583 -13.27344 -13.13384 -12.94850 -12.66688 -12.54456 -11.91760 -11.70219 -11.57868 -11.53102 -11.50590 -11.36199 -11.13920 -11.06801 -10.80545 -10.59806 -10.18247 -10.09872 -9.78774 -9.54125 -9.34531 -9.15686 -8.42177 -8.05275 -7.53736 -5.15672 0.89560 1.68030 1.71154 2.19668 2.38102 2.50397 2.80524 2.92746 2.99593 3.43482 3.58725 3.87683 4.18874 4.28198 4.38283 4.79512 4.81437 4.82559 4.91475 5.12659 5.14994 5.23888 5.60155 5.74928 6.01857 6.19748 6.22792 6.46697 6.52070 6.71088 6.85275 6.92194 6.96502 7.20943 7.31797 7.46205 7.74373 8.01462 8.02961 8.16287 9.43688 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.013009 B = 0.003738 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.919159 B = 7488.120144 C = 8183.713754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.001 4.001 2 O -0.147 6.147 3 N -0.600 5.600 4 C 0.522 3.478 5 O -0.515 6.515 6 C 0.111 3.889 7 N -1.110 6.110 8 S 2.703 3.297 9 O -0.964 6.964 10 O -0.973 6.973 11 C -0.796 4.796 12 C 0.027 3.973 13 C -0.250 4.250 14 C 0.117 3.883 15 C -0.399 4.399 16 H 0.104 0.896 17 C 0.079 3.921 18 N -0.767 5.767 19 Si 0.915 3.085 20 H -0.260 1.260 21 H -0.282 1.282 22 H -0.238 1.238 23 C -0.202 4.202 24 C 0.087 3.913 25 Cl -0.099 7.099 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.111 0.889 29 H 0.410 0.590 30 H 0.110 0.890 31 H 0.116 0.884 32 H 0.424 0.576 33 H 0.124 0.876 34 H 0.113 0.887 35 H 0.297 0.703 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.472 -8.744 -4.605 13.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 O -0.150 6.150 3 N -0.305 5.305 4 C 0.308 3.692 5 O -0.388 6.388 6 C -0.020 4.020 7 N -0.870 5.870 8 S 2.798 3.202 9 O -0.954 6.954 10 O -0.963 6.963 11 C -0.890 4.890 12 C 0.006 3.994 13 C -0.270 4.270 14 C 0.112 3.888 15 C -0.424 4.424 16 H 0.122 0.878 17 C -0.146 4.146 18 N -0.387 5.387 19 Si 0.739 3.261 20 H -0.186 1.186 21 H -0.209 1.209 22 H -0.160 1.160 23 C -0.223 4.223 24 C 0.059 3.941 25 Cl -0.070 7.070 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.129 0.871 29 H 0.250 0.750 30 H 0.128 0.872 31 H 0.133 0.867 32 H 0.261 0.739 33 H 0.142 0.858 34 H 0.130 0.870 35 H 0.108 0.892 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.461 -9.284 -5.252 13.615 hybrid contribution -0.662 -0.120 1.105 1.294 sum -9.123 -9.404 -4.146 13.742 Atomic orbital electron populations 1.23309 0.80490 1.04612 1.01433 1.90591 1.20138 1.06921 1.97322 1.47593 1.05596 0.98733 1.78539 1.21072 0.79853 0.92373 0.75904 1.90703 1.60020 1.39838 1.48248 1.21852 0.82212 0.92298 1.05637 1.55523 1.13340 1.29028 1.89158 1.01190 0.72178 0.72523 0.74329 1.93550 1.79701 1.77968 1.44135 1.93518 1.33166 1.82028 1.87632 1.29161 1.00431 1.29698 1.29738 1.20229 0.95660 0.92501 0.90971 1.21129 0.97303 1.05563 1.03016 1.17749 0.90367 0.89351 0.91338 1.19900 1.16219 1.08420 0.97894 0.87834 1.26440 0.93721 0.98653 0.95829 1.69653 1.28628 1.29425 1.10954 0.86209 0.80501 0.81979 0.77376 1.18572 1.20896 1.16041 1.20954 0.99338 1.02351 0.99607 1.19990 0.85884 0.97083 0.91164 1.98300 1.52087 1.90263 1.66377 0.92409 0.92502 0.87119 0.75011 0.87237 0.86686 0.73928 0.85794 0.86961 0.89162 0.86186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.01 11.30 101.05 1.14 1.14 16 2 O -0.15 -1.69 11.47 -29.66 -0.34 -2.03 16 3 N -0.60 -6.48 6.39 31.22 0.20 -6.28 16 4 C 0.52 7.26 8.04 -10.99 -0.09 7.17 16 5 O -0.52 -9.10 16.13 -12.63 -0.20 -9.30 16 6 C 0.11 1.48 4.58 -5.19 -0.02 1.45 16 7 N -1.11 -17.11 5.93 -11.65 -0.07 -17.18 16 8 S 2.70 48.98 5.44 -107.50 -0.58 48.40 16 9 O -0.96 -18.79 15.94 -57.17 -0.91 -19.70 16 10 O -0.97 -19.49 16.94 -57.17 -0.97 -20.46 16 11 C -0.80 -15.62 5.91 -39.25 -0.23 -15.86 16 12 C 0.03 0.54 9.52 -39.66 -0.38 0.16 16 13 C -0.25 -5.38 7.18 -38.87 -0.28 -5.66 16 14 C 0.12 2.57 5.10 -106.83 -0.55 2.02 16 15 C -0.40 -9.14 9.57 -37.74 -0.36 -9.50 16 16 H 0.10 2.44 8.06 -52.49 -0.42 2.02 16 17 C 0.08 1.76 5.40 -17.34 -0.09 1.66 16 18 N -0.77 -17.36 13.93 55.55 0.77 -16.59 16 19 Si 0.92 17.92 24.52 -169.99 -4.17 13.75 16 20 H -0.26 -4.96 6.71 56.52 0.38 -4.58 16 21 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 22 H -0.24 -4.79 6.86 56.52 0.39 -4.40 16 23 C -0.20 -4.07 9.57 -38.84 -0.37 -4.44 16 24 C 0.09 1.65 6.08 -39.58 -0.24 1.41 16 25 Cl -0.10 -1.51 20.53 -51.86 -1.06 -2.57 16 26 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 28 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.41 2.84 8.54 -40.82 -0.35 2.49 16 30 H 0.11 1.34 6.14 -51.93 -0.32 1.02 16 31 H 0.12 1.43 5.86 -51.93 -0.30 1.13 16 32 H 0.42 6.30 7.70 -34.47 -0.27 6.04 16 33 H 0.12 2.32 7.31 -52.49 -0.38 1.94 16 34 H 0.11 2.34 4.73 -52.49 -0.25 2.09 16 35 H 0.30 6.00 8.30 -40.82 -0.34 5.67 16 36 H 0.12 2.21 8.06 -52.49 -0.42 1.79 16 LS Contribution 329.27 15.07 4.96 4.96 Total: -1.00 -30.40 329.27 -7.00 -37.40 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -3.15 Total: 10.05 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: -1.47 Total: -20.44 kcal Atomic # 7 Polarization: -40.95 SS G_CDS: 0.90 Total: -40.05 kcal Atomic # 8 Polarization: -49.07 SS G_CDS: -2.42 Total: -51.49 kcal Atomic # 14 Polarization: 17.92 SS G_CDS: -4.17 Total: 13.75 kcal Atomic # 16 Polarization: 48.98 SS G_CDS: -0.58 Total: 48.40 kcal Atomic # 17 Polarization: -1.51 SS G_CDS: -1.06 Total: -2.57 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.40 -7.00 -37.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665890718.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.768 kcal (2) G-P(sol) polarization free energy of solvation -30.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.46 seconds