Wall clock time and date at job start Wed Apr 1 2020 04:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 N 1.41593 * 113.99939 * 2 1 4 4 C 1.34783 * 119.99922 * 180.02562 * 3 2 1 5 5 O 1.21276 * 119.99934 * 359.97438 * 4 3 2 6 6 C 1.50693 * 119.99843 * 180.02562 * 4 3 2 7 7 N 1.46504 * 109.47216 * 179.97438 * 6 4 3 8 8 S 1.65596 * 120.00388 * 164.99635 * 7 6 4 9 9 O 1.42094 * 106.40332 * 311.46455 * 8 7 6 10 10 O 1.42097 * 106.40324 * 178.53879 * 8 7 6 11 11 C 1.76209 * 107.21484 * 64.99992 * 8 7 6 12 12 C 1.38638 * 119.75122 * 115.25905 * 11 8 7 13 13 C 1.37606 * 120.25721 * 180.29818 * 12 11 8 14 14 C 1.40744 * 119.76944 * 359.72232 * 13 12 11 15 15 C 1.41397 * 120.23414 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00269 * 150.20771 * 15 14 13 17 17 C 1.39944 * 120.00151 * 330.20047 * 15 14 13 18 18 N 1.30829 * 120.00447 * 161.74049 * 17 15 14 19 19 Si 1.86800 * 119.99955 * 341.73918 * 17 15 14 20 20 H 1.48503 * 109.47260 * 95.41137 * 19 17 15 21 21 H 1.48499 * 109.47274 * 215.41340 * 19 17 15 22 22 H 1.48503 * 109.47017 * 335.41038 * 19 17 15 23 23 C 1.40676 * 119.52867 * 359.97438 * 14 13 12 24 24 C 1.37757 * 119.72807 * 0.02562 * 23 14 13 25 25 Cl 1.73603 * 119.88434 * 179.97438 * 24 23 14 26 26 H 1.08998 * 109.47403 * 299.99881 * 1 2 3 27 27 H 1.08999 * 109.47176 * 60.00190 * 1 2 3 28 28 H 1.09006 * 109.47447 * 179.97438 * 1 2 3 29 29 H 0.97000 * 120.00250 * 0.02562 * 3 2 1 30 30 H 1.09003 * 109.47672 * 59.99708 * 6 4 3 31 31 H 1.09002 * 109.47568 * 299.99716 * 6 4 3 32 32 H 0.97005 * 119.99530 * 344.99609 * 7 6 4 33 33 H 1.07997 * 119.87331 * 359.97438 * 12 11 8 34 34 H 1.08002 * 120.11652 * 179.69763 * 13 12 11 35 35 H 0.96995 * 120.00087 * 180.02562 * 18 17 15 36 36 H 1.07994 * 120.13291 * 180.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0049 1.2935 0.0000 4 6 3.3453 1.4344 -0.0005 5 8 4.0582 0.4532 -0.0005 6 6 3.9582 2.8111 0.0001 7 7 5.4187 2.6954 -0.0001 8 16 6.3535 4.0111 -0.3708 9 8 5.8143 4.5631 -1.5639 10 8 7.7052 3.5895 -0.2510 11 6 6.0921 5.2096 0.8942 12 6 7.1407 5.5725 1.7254 13 6 6.9467 6.5029 2.7205 14 6 5.6794 7.0913 2.8896 15 6 5.4692 8.0487 3.9087 16 1 4.7316 8.8262 3.7753 17 6 6.2168 7.9887 5.0902 18 7 6.2967 9.0378 5.8678 19 14 7.1006 6.4107 5.5571 20 1 8.5109 6.4783 5.0968 21 1 7.0689 6.2434 7.0323 22 1 6.4247 5.2557 4.9134 23 6 4.6236 6.7208 2.0369 24 6 4.8402 5.7874 1.0473 25 17 3.5401 5.3268 -0.0069 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.4347 2.0783 0.0004 30 1 3.6370 3.3515 0.8905 31 1 3.6362 3.3526 -0.8894 32 1 5.8381 1.8481 0.2170 33 1 8.1123 5.1195 1.5946 34 1 7.7639 6.7803 3.3698 35 1 6.8152 8.9963 6.6865 36 1 3.6474 7.1665 2.1577 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665890718.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:05 Heat of formation + Delta-G solvation = -100.922390 kcal Electronic energy + Delta-G solvation = -26153.436760 eV Core-core repulsion = 21985.315732 eV Total energy + Delta-G solvation = -4168.121027 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.042 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.80558 -39.86307 -38.42021 -38.24106 -37.62753 -36.85381 -35.79445 -35.75521 -33.57033 -32.72921 -31.56939 -28.52288 -27.71337 -27.01944 -23.77095 -23.20266 -22.30218 -20.66769 -19.75227 -19.60447 -19.27338 -18.58553 -17.56236 -17.49581 -17.25753 -16.92484 -16.48648 -16.31484 -15.95129 -15.65618 -15.39192 -15.07858 -14.92892 -14.70231 -14.65994 -14.34650 -14.09027 -13.46428 -13.25237 -13.12470 -13.06156 -12.98462 -12.91974 -12.78073 -12.56199 -12.24883 -12.16053 -12.09435 -11.74394 -11.60284 -11.26431 -10.89843 -10.63204 -10.06506 -10.05002 -9.60738 -9.18471 -6.86569 -0.55284 0.09130 0.57922 0.81479 0.96529 1.23578 1.35749 1.37189 1.44409 1.98777 2.04363 2.29209 2.75742 3.15371 3.23655 3.46284 3.72253 4.05000 4.06333 4.17143 4.35810 4.39689 4.42330 4.50063 4.61113 4.65331 4.73841 4.90176 5.11580 5.23364 5.32193 5.61477 5.63777 5.82702 5.92287 6.05826 6.16171 6.36766 6.48331 7.08293 7.84977 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.013009 B = 0.003738 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.919159 B = 7488.120144 C = 8183.713754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.009 4.009 2 O -0.177 6.177 3 N -0.584 5.584 4 C 0.524 3.476 5 O -0.559 6.559 6 C 0.105 3.895 7 N -1.104 6.104 8 S 2.726 3.274 9 O -0.974 6.974 10 O -0.990 6.990 11 C -0.797 4.797 12 C 0.019 3.981 13 C -0.265 4.265 14 C 0.110 3.890 15 C -0.432 4.432 16 H 0.083 0.917 17 C 0.056 3.944 18 N -0.801 5.801 19 Si 0.954 3.046 20 H -0.252 1.252 21 H -0.269 1.269 22 H -0.247 1.247 23 C -0.212 4.212 24 C 0.084 3.916 25 Cl -0.061 7.061 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.128 0.872 29 H 0.428 0.572 30 H 0.124 0.876 31 H 0.127 0.873 32 H 0.428 0.572 33 H 0.140 0.860 34 H 0.115 0.885 35 H 0.306 0.694 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.595 -10.240 -5.542 15.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 O -0.181 6.181 3 N -0.289 5.289 4 C 0.310 3.690 5 O -0.435 6.435 6 C -0.025 4.025 7 N -0.867 5.867 8 S 2.819 3.181 9 O -0.964 6.964 10 O -0.980 6.980 11 C -0.889 4.889 12 C -0.001 4.001 13 C -0.285 4.285 14 C 0.105 3.895 15 C -0.458 4.458 16 H 0.101 0.899 17 C -0.166 4.166 18 N -0.423 5.423 19 Si 0.775 3.225 20 H -0.177 1.177 21 H -0.195 1.195 22 H -0.170 1.170 23 C -0.232 4.232 24 C 0.056 3.944 25 Cl -0.032 7.032 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.146 0.854 29 H 0.272 0.728 30 H 0.141 0.859 31 H 0.144 0.856 32 H 0.266 0.734 33 H 0.158 0.842 34 H 0.133 0.867 35 H 0.118 0.882 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.641 -10.732 -6.177 15.694 hybrid contribution -0.504 0.205 1.170 1.290 sum -10.145 -10.528 -5.007 15.454 Atomic orbital electron populations 1.23633 0.77756 1.06214 1.02909 1.90581 1.23174 1.06880 1.97450 1.47362 1.05155 0.99766 1.76652 1.20997 0.80625 0.91781 0.75582 1.90687 1.61268 1.40990 1.50604 1.22045 0.80955 0.92698 1.06766 1.55229 1.14294 1.28226 1.88941 1.00492 0.71754 0.72265 0.73562 1.93535 1.79875 1.78546 1.44468 1.93494 1.34583 1.82251 1.87690 1.29579 1.00467 1.29719 1.29158 1.20505 0.96740 0.92191 0.90632 1.21278 0.97323 1.06131 1.03757 1.17918 0.91111 0.89087 0.91347 1.19849 1.17304 1.09347 0.99334 0.89924 1.26926 0.93915 1.00351 0.95452 1.69656 1.30167 1.30556 1.11936 0.85634 0.79968 0.79083 0.77772 1.17722 1.19530 1.17027 1.21138 0.99589 1.02703 0.99793 1.20088 0.86911 0.96178 0.91223 1.98307 1.50253 1.89755 1.64899 0.90985 0.90899 0.85404 0.72824 0.85867 0.85577 0.73352 0.84238 0.86719 0.88228 0.84939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.08 11.30 113.37 1.28 1.20 16 2 O -0.18 -3.70 11.47 -21.37 -0.25 -3.95 16 3 N -0.58 -11.21 6.39 -173.53 -1.11 -12.32 16 4 C 0.52 13.55 8.04 87.65 0.71 14.25 16 5 O -0.56 -19.11 16.13 14.38 0.23 -18.88 16 6 C 0.11 2.54 4.58 85.63 0.39 2.93 16 7 N -1.10 -31.75 5.93 -190.79 -1.13 -32.89 16 8 S 2.73 93.13 5.44 -56.49 -0.31 92.83 16 9 O -0.97 -35.62 15.94 -128.00 -2.04 -37.66 16 10 O -0.99 -37.84 16.94 -128.00 -2.17 -40.01 16 11 C -0.80 -29.82 5.91 22.48 0.13 -29.69 16 12 C 0.02 0.76 9.52 22.22 0.21 0.97 16 13 C -0.26 -11.27 7.18 22.73 0.16 -11.11 16 14 C 0.11 4.84 5.10 -21.29 -0.11 4.73 16 15 C -0.43 -20.36 9.57 23.46 0.22 -20.13 16 16 H 0.08 4.10 8.06 -2.91 -0.02 4.07 16 17 C 0.06 2.52 5.40 85.26 0.46 2.98 16 18 N -0.80 -37.11 13.93 21.83 0.30 -36.80 16 19 Si 0.95 36.45 24.52 68.60 1.68 38.13 16 20 H -0.25 -9.22 6.71 99.48 0.67 -8.56 16 21 H -0.27 -9.62 7.11 99.48 0.71 -8.92 16 22 H -0.25 -9.71 6.86 99.48 0.68 -9.03 16 23 C -0.21 -8.36 9.57 22.75 0.22 -8.14 16 24 C 0.08 3.04 6.08 22.27 0.14 3.18 16 25 Cl -0.06 -1.69 20.53 -2.72 -0.06 -1.75 16 26 H 0.07 0.47 8.14 -2.39 -0.02 0.46 16 27 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.13 0.77 8.14 -2.38 -0.02 0.75 16 29 H 0.43 4.60 8.54 -92.71 -0.79 3.81 16 30 H 0.12 2.64 6.14 -2.39 -0.01 2.63 16 31 H 0.13 2.75 5.86 -2.39 -0.01 2.73 16 32 H 0.43 12.04 7.70 -96.74 -0.75 11.30 16 33 H 0.14 5.00 7.31 -2.91 -0.02 4.98 16 34 H 0.12 4.74 4.73 -2.91 -0.01 4.73 16 35 H 0.31 12.56 8.30 -92.71 -0.77 11.79 16 36 H 0.13 4.78 8.06 -2.91 -0.02 4.76 16 Total: -1.00 -64.74 329.27 -1.44 -66.19 By element: Atomic # 1 Polarization: 26.36 SS G_CDS: -0.42 Total: 25.94 kcal Atomic # 6 Polarization: -42.65 SS G_CDS: 3.82 Total: -38.83 kcal Atomic # 7 Polarization: -80.07 SS G_CDS: -1.94 Total: -82.00 kcal Atomic # 8 Polarization: -96.27 SS G_CDS: -4.22 Total: -100.49 kcal Atomic # 14 Polarization: 36.45 SS G_CDS: 1.68 Total: 38.13 kcal Atomic # 16 Polarization: 93.13 SS G_CDS: -0.31 Total: 92.83 kcal Atomic # 17 Polarization: -1.69 SS G_CDS: -0.06 Total: -1.75 kcal Total: -64.74 -1.44 -66.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665890718.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.734 kcal (2) G-P(sol) polarization free energy of solvation -64.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds