Wall clock time and date at job start Wed Apr 1 2020 06:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42102 * 110.54544 * 2 1 4 4 O 1.42095 * 110.54367 * 223.25042 * 2 1 3 5 5 N 1.65598 * 104.45023 * 111.62532 * 2 1 3 6 6 C 1.46496 * 120.00426 * 64.99950 * 5 2 1 7 7 C 1.52998 * 109.47558 * 165.00095 * 6 5 2 8 8 N 1.46497 * 109.47292 * 180.02562 * 7 6 5 9 9 S 1.65600 * 120.00233 * 165.29977 * 8 7 6 10 10 O 1.42099 * 106.40077 * 312.75539 * 9 8 7 11 11 O 1.42104 * 106.40197 * 179.83814 * 9 8 7 12 12 C 1.76202 * 107.21645 * 66.29679 * 9 8 7 13 13 C 1.37638 * 120.12545 * 113.66314 * 12 9 8 14 14 C 1.38612 * 120.24592 * 180.31955 * 13 12 9 15 15 C 1.38651 * 120.50190 * 359.67333 * 14 13 12 16 16 C 1.37597 * 120.24977 * 359.97438 * 15 14 13 17 17 C 1.40696 * 120.12863 * 293.35372 * 12 9 8 18 18 C 1.41398 * 120.24195 * 359.97438 * 17 12 9 19 19 H 1.07996 * 119.99806 * 327.75148 * 18 17 12 20 20 C 1.39944 * 119.99604 * 147.75066 * 18 17 12 21 21 N 1.30823 * 120.00350 * 341.32944 * 20 18 17 22 22 Si 1.86805 * 119.99354 * 161.32936 * 20 18 17 23 23 H 1.48500 * 109.46661 * 179.97438 * 22 20 18 24 24 H 1.48499 * 109.47259 * 299.99524 * 22 20 18 25 25 H 1.48495 * 109.47140 * 60.00141 * 22 20 18 26 26 H 1.09007 * 109.46799 * 308.37742 * 1 2 3 27 27 H 1.08994 * 109.46882 * 68.37386 * 1 2 3 28 28 H 1.09001 * 109.46713 * 188.37743 * 1 2 3 29 29 H 0.97000 * 120.00070 * 244.99860 * 5 2 1 30 30 H 1.09008 * 109.46773 * 44.99853 * 6 5 2 31 31 H 1.08998 * 109.46907 * 285.00121 * 6 5 2 32 32 H 1.08998 * 109.47107 * 60.00005 * 7 6 5 33 33 H 1.08998 * 109.47033 * 299.99949 * 7 6 5 34 34 H 0.97006 * 119.99687 * 345.29884 * 8 7 6 35 35 H 1.08007 * 119.87968 * 0.02562 * 13 12 9 36 36 H 1.08008 * 119.74981 * 179.69430 * 14 13 12 37 37 H 1.08000 * 119.87754 * 180.02562 * 15 14 13 38 38 H 1.08000 * 120.13363 * 180.02562 * 16 15 14 39 39 H 0.96998 * 119.99613 * 354.94186 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3126 -0.9692 -0.9117 5 7 2.2272 -0.5910 1.4907 6 6 1.8908 -1.9706 1.8508 7 6 2.6876 -2.3830 3.0902 8 7 2.3516 -3.7628 3.4499 9 16 3.3093 -4.5985 4.5114 10 8 4.6500 -4.3981 4.0854 11 8 2.7230 -5.8851 4.6535 12 6 3.1621 -3.8086 6.0796 13 6 2.5654 -4.4664 7.1311 14 6 2.4423 -3.8449 8.3640 15 6 2.9236 -2.5587 8.5549 16 6 3.5302 -1.8848 7.5199 17 6 3.6599 -2.5056 6.2635 18 6 4.2812 -1.8228 5.1924 19 1 4.8388 -2.3754 4.4508 20 6 4.1734 -0.4310 5.0935 21 7 3.2296 0.1999 5.7436 22 14 5.3773 0.5258 4.0330 23 1 5.0505 1.9731 4.0961 24 1 6.7587 0.3076 4.5323 25 1 5.2793 0.0576 2.6273 26 1 -0.3633 0.6381 0.8057 27 1 -0.3633 0.3787 -0.9553 28 1 -0.3633 -1.0167 0.1497 29 1 2.6921 -0.0237 2.1255 30 1 2.1394 -2.6334 1.0219 31 1 0.8243 -2.0405 2.0647 32 1 2.4390 -1.7203 3.9191 33 1 3.7541 -2.3131 2.8763 34 1 1.5681 -4.1870 3.0662 35 1 2.1873 -5.4688 6.9938 36 1 1.9683 -4.3667 9.1822 37 1 2.8228 -2.0843 9.5198 38 1 3.9048 -0.8832 7.6708 39 1 2.5604 -0.3018 6.2349 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667105347.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:59:23 Heat of formation + Delta-G solvation = -131.166544 kcal Electronic energy + Delta-G solvation = -27557.030896 eV Core-core repulsion = 23525.475185 eV Total energy + Delta-G solvation = -4031.555712 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 5.04 seconds Orbital eigenvalues (eV) -38.07666 -37.20273 -36.72812 -36.24647 -35.97867 -35.01312 -34.28052 -33.47540 -30.33494 -29.65253 -29.57309 -27.48961 -25.57318 -22.57204 -21.85769 -21.31756 -19.55002 -18.84603 -18.29449 -17.73944 -17.20572 -16.47849 -16.24622 -16.02526 -15.43016 -14.99569 -14.91641 -14.68737 -14.57776 -14.09022 -13.83758 -13.50063 -13.35712 -13.32297 -12.86017 -12.50363 -12.29724 -12.15761 -12.08018 -11.98495 -11.89022 -11.56892 -11.36385 -11.30848 -11.21970 -11.15306 -11.07951 -10.85361 -10.61455 -10.52337 -9.92768 -9.51875 -9.46628 -9.39758 -8.79002 -8.34701 -7.89877 -7.54621 -4.97323 0.17738 1.37346 2.09994 2.52408 2.64246 3.04089 3.07358 3.23081 3.72046 3.74733 3.86830 4.09686 4.22024 4.54052 4.56605 4.80910 4.88622 5.02849 5.22121 5.32055 5.44330 5.49953 5.71993 5.82189 5.95171 6.06154 6.18018 6.29098 6.51519 6.59332 6.76684 6.97871 7.04104 7.17649 7.25673 7.44055 7.50789 7.57220 7.69633 7.85815 8.26413 8.45608 9.68241 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.012483 B = 0.004673 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.450940 B = 5990.616010 C = 7096.348783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.674 4.674 2 S 2.614 3.386 3 O -0.958 6.958 4 O -0.957 6.957 5 N -1.115 6.115 6 C 0.103 3.897 7 C 0.114 3.886 8 N -1.119 6.119 9 S 2.710 3.290 10 O -0.971 6.971 11 O -0.996 6.996 12 C -0.777 4.777 13 C 0.011 3.989 14 C -0.256 4.256 15 C -0.057 4.057 16 C -0.207 4.207 17 C 0.169 3.831 18 C -0.535 4.535 19 H 0.119 0.881 20 C 0.043 3.957 21 N -0.781 5.781 22 Si 1.039 2.961 23 H -0.266 1.266 24 H -0.266 1.266 25 H -0.260 1.260 26 H 0.131 0.869 27 H 0.126 0.874 28 H 0.127 0.873 29 H 0.423 0.577 30 H 0.084 0.916 31 H 0.066 0.934 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.407 0.593 35 H 0.111 0.889 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.112 0.888 39 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.282 1.565 -6.861 10.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.824 4.824 2 S 2.705 3.295 3 O -0.948 6.948 4 O -0.947 6.947 5 N -0.876 5.876 6 C -0.025 4.025 7 C -0.013 4.013 8 N -0.876 5.876 9 S 2.807 3.193 10 O -0.961 6.961 11 O -0.987 6.987 12 C -0.872 4.872 13 C -0.009 4.009 14 C -0.276 4.276 15 C -0.076 4.076 16 C -0.226 4.226 17 C 0.165 3.835 18 C -0.563 4.563 19 H 0.136 0.864 20 C -0.181 4.181 21 N -0.403 5.403 22 Si 0.860 3.140 23 H -0.190 1.190 24 H -0.191 1.191 25 H -0.185 1.185 26 H 0.149 0.851 27 H 0.144 0.856 28 H 0.146 0.854 29 H 0.259 0.741 30 H 0.103 0.897 31 H 0.084 0.916 32 H 0.114 0.886 33 H 0.111 0.889 34 H 0.239 0.761 35 H 0.129 0.871 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.130 0.870 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.733 2.635 -8.293 10.420 hybrid contribution -1.641 -1.050 1.818 2.665 sum -7.375 1.585 -6.475 9.941 Atomic orbital electron populations 1.30539 1.28767 1.11667 1.11429 1.04710 0.77575 0.73930 0.73270 1.93627 1.77862 1.37599 1.85716 1.93614 1.76911 1.61794 1.62370 1.55430 1.74242 1.21331 1.36613 1.21594 0.99385 0.81839 0.99666 1.21971 1.00634 0.82343 0.96366 1.55449 1.44276 1.24744 1.63176 1.00795 0.73071 0.71711 0.73748 1.93488 1.34836 1.85885 1.81845 1.93464 1.78942 1.38760 1.87503 1.29874 1.26156 1.11760 1.19377 1.20336 0.91379 0.96864 0.92341 1.20517 1.12535 0.97061 0.97519 1.20880 0.95153 0.94298 0.97241 1.21393 1.06725 1.01136 0.93388 1.17068 0.85389 0.88800 0.92290 1.21552 1.28723 0.95555 1.10445 0.86366 1.27047 0.98224 0.95459 0.97376 1.70507 1.08632 1.42096 1.19110 0.83994 0.76377 0.76881 0.76721 1.19007 1.19072 1.18504 0.85074 0.85558 0.85387 0.74107 0.89747 0.91575 0.88605 0.88900 0.76084 0.87120 0.88356 0.88497 0.87026 0.88344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -4.62 10.89 101.05 1.10 -3.52 16 2 S 2.61 29.53 6.10 -107.50 -0.66 28.87 16 3 O -0.96 -14.06 18.08 -57.54 -1.04 -15.11 16 4 O -0.96 -13.76 17.50 -57.54 -1.01 -14.77 16 5 N -1.11 -13.87 5.88 -10.61 -0.06 -13.93 16 6 C 0.10 1.26 6.27 -4.04 -0.03 1.23 16 7 C 0.11 1.85 4.42 -4.04 -0.02 1.83 16 8 N -1.12 -18.00 6.00 -10.62 -0.06 -18.06 16 9 S 2.71 54.98 5.44 -107.50 -0.58 54.40 16 10 O -0.97 -22.31 15.05 -57.17 -0.86 -23.17 16 11 O -1.00 -21.20 16.97 -57.17 -0.97 -22.17 16 12 C -0.78 -17.18 5.96 -38.87 -0.23 -17.41 16 13 C 0.01 0.23 9.53 -39.66 -0.38 -0.15 16 14 C -0.26 -5.19 10.05 -39.29 -0.39 -5.59 16 15 C -0.06 -1.17 10.02 -39.66 -0.40 -1.57 16 16 C -0.21 -4.66 7.82 -38.87 -0.30 -4.96 16 17 C 0.17 3.92 5.17 -106.82 -0.55 3.37 16 18 C -0.54 -12.05 4.68 -37.74 -0.18 -12.23 16 19 H 0.12 2.74 4.32 -52.49 -0.23 2.51 16 20 C 0.04 0.91 4.06 -17.34 -0.07 0.84 16 21 N -0.78 -17.04 12.50 55.55 0.69 -16.35 16 22 Si 1.04 19.16 29.97 -169.99 -5.09 14.07 16 23 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 24 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 25 H -0.26 -4.45 7.11 56.52 0.40 -4.05 16 26 H 0.13 0.78 8.14 -51.92 -0.42 0.36 16 27 H 0.13 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.13 0.69 8.14 -51.92 -0.42 0.27 16 29 H 0.42 5.60 8.62 -34.47 -0.30 5.31 16 30 H 0.08 0.96 7.69 -51.92 -0.40 0.56 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.10 1.68 5.71 -51.93 -0.30 1.39 16 33 H 0.09 1.65 6.21 -51.93 -0.32 1.33 16 34 H 0.41 5.10 8.65 -34.47 -0.30 4.80 16 35 H 0.11 2.16 7.32 -52.48 -0.38 1.78 16 36 H 0.10 1.73 8.06 -52.48 -0.42 1.31 16 37 H 0.10 1.73 8.06 -52.49 -0.42 1.30 16 38 H 0.11 2.54 6.73 -52.49 -0.35 2.19 16 39 H 0.30 6.75 6.38 -40.82 -0.26 6.49 16 LS Contribution 344.00 15.07 5.18 5.18 Total: -1.00 -32.17 344.00 -10.08 -42.25 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: -4.17 Total: 16.94 kcal Atomic # 6 Polarization: -36.71 SS G_CDS: -1.45 Total: -38.16 kcal Atomic # 7 Polarization: -48.91 SS G_CDS: 0.57 Total: -48.34 kcal Atomic # 8 Polarization: -71.34 SS G_CDS: -3.88 Total: -75.21 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.09 Total: 14.07 kcal Atomic # 16 Polarization: 84.51 SS G_CDS: -1.24 Total: 83.27 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.17 -10.08 -42.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667105347.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.918 kcal (2) G-P(sol) polarization free energy of solvation -32.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.04 seconds