Wall clock time and date at job start Wed Apr 1 2020 06:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42102 * 110.54544 * 2 1 4 4 O 1.42095 * 110.54367 * 223.25042 * 2 1 3 5 5 N 1.65598 * 104.45023 * 111.62532 * 2 1 3 6 6 C 1.46496 * 120.00426 * 64.99950 * 5 2 1 7 7 C 1.52998 * 109.47558 * 165.00095 * 6 5 2 8 8 N 1.46497 * 109.47292 * 180.02562 * 7 6 5 9 9 S 1.65600 * 120.00233 * 165.29977 * 8 7 6 10 10 O 1.42099 * 106.40077 * 312.75539 * 9 8 7 11 11 O 1.42104 * 106.40197 * 179.83814 * 9 8 7 12 12 C 1.76202 * 107.21645 * 66.29679 * 9 8 7 13 13 C 1.37638 * 120.12545 * 113.66314 * 12 9 8 14 14 C 1.38612 * 120.24592 * 180.31955 * 13 12 9 15 15 C 1.38651 * 120.50190 * 359.67333 * 14 13 12 16 16 C 1.37597 * 120.24977 * 359.97438 * 15 14 13 17 17 C 1.40696 * 120.12863 * 293.35372 * 12 9 8 18 18 C 1.41398 * 120.24195 * 359.97438 * 17 12 9 19 19 H 1.07996 * 119.99806 * 327.75148 * 18 17 12 20 20 C 1.39944 * 119.99604 * 147.75066 * 18 17 12 21 21 N 1.30823 * 120.00350 * 341.32944 * 20 18 17 22 22 Si 1.86805 * 119.99354 * 161.32936 * 20 18 17 23 23 H 1.48500 * 109.46661 * 179.97438 * 22 20 18 24 24 H 1.48499 * 109.47259 * 299.99524 * 22 20 18 25 25 H 1.48495 * 109.47140 * 60.00141 * 22 20 18 26 26 H 1.09007 * 109.46799 * 308.37742 * 1 2 3 27 27 H 1.08994 * 109.46882 * 68.37386 * 1 2 3 28 28 H 1.09001 * 109.46713 * 188.37743 * 1 2 3 29 29 H 0.97000 * 120.00070 * 244.99860 * 5 2 1 30 30 H 1.09008 * 109.46773 * 44.99853 * 6 5 2 31 31 H 1.08998 * 109.46907 * 285.00121 * 6 5 2 32 32 H 1.08998 * 109.47107 * 60.00005 * 7 6 5 33 33 H 1.08998 * 109.47033 * 299.99949 * 7 6 5 34 34 H 0.97006 * 119.99687 * 345.29884 * 8 7 6 35 35 H 1.08007 * 119.87968 * 0.02562 * 13 12 9 36 36 H 1.08008 * 119.74981 * 179.69430 * 14 13 12 37 37 H 1.08000 * 119.87754 * 180.02562 * 15 14 13 38 38 H 1.08000 * 120.13363 * 180.02562 * 16 15 14 39 39 H 0.96998 * 119.99613 * 354.94186 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3126 -0.9692 -0.9117 5 7 2.2272 -0.5910 1.4907 6 6 1.8908 -1.9706 1.8508 7 6 2.6876 -2.3830 3.0902 8 7 2.3516 -3.7628 3.4499 9 16 3.3093 -4.5985 4.5114 10 8 4.6500 -4.3981 4.0854 11 8 2.7230 -5.8851 4.6535 12 6 3.1621 -3.8086 6.0796 13 6 2.5654 -4.4664 7.1311 14 6 2.4423 -3.8449 8.3640 15 6 2.9236 -2.5587 8.5549 16 6 3.5302 -1.8848 7.5199 17 6 3.6599 -2.5056 6.2635 18 6 4.2812 -1.8228 5.1924 19 1 4.8388 -2.3754 4.4508 20 6 4.1734 -0.4310 5.0935 21 7 3.2296 0.1999 5.7436 22 14 5.3773 0.5258 4.0330 23 1 5.0505 1.9731 4.0961 24 1 6.7587 0.3076 4.5323 25 1 5.2793 0.0576 2.6273 26 1 -0.3633 0.6381 0.8057 27 1 -0.3633 0.3787 -0.9553 28 1 -0.3633 -1.0167 0.1497 29 1 2.6921 -0.0237 2.1255 30 1 2.1394 -2.6334 1.0219 31 1 0.8243 -2.0405 2.0647 32 1 2.4390 -1.7203 3.9191 33 1 3.7541 -2.3131 2.8763 34 1 1.5681 -4.1870 3.0662 35 1 2.1873 -5.4688 6.9938 36 1 1.9683 -4.3667 9.1822 37 1 2.8228 -2.0843 9.5198 38 1 3.9048 -0.8832 7.6708 39 1 2.5604 -0.3018 6.2349 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667105347.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:59:19 Heat of formation + Delta-G solvation = -158.621470 kcal Electronic energy + Delta-G solvation = -27558.221431 eV Core-core repulsion = 23525.475185 eV Total energy + Delta-G solvation = -4032.746246 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 3.75 seconds Orbital eigenvalues (eV) -39.71763 -38.30780 -38.12817 -37.57649 -36.97244 -36.72461 -35.87369 -34.68585 -31.98684 -31.23374 -30.24643 -28.65471 -27.21338 -23.88226 -23.35119 -22.97251 -20.57638 -20.33898 -19.87804 -18.80422 -18.61495 -17.88743 -17.30151 -17.05096 -16.93802 -16.58693 -16.21354 -16.00588 -15.68678 -15.54204 -15.42258 -14.95608 -14.49847 -14.11992 -13.97855 -13.90874 -13.52462 -13.37612 -13.28512 -13.15283 -13.10640 -13.04269 -13.01841 -12.94812 -12.79750 -12.72403 -12.28528 -12.14214 -11.97880 -11.92324 -11.55705 -11.09437 -11.02771 -10.44194 -10.18484 -10.00647 -9.58274 -9.23651 -6.67797 -0.65510 -0.20509 0.42443 0.86305 1.51311 1.55490 1.72346 1.77467 2.21081 2.37809 2.59074 2.92181 2.92856 3.29851 3.35842 3.68651 3.81327 4.10766 4.23227 4.23605 4.25609 4.34541 4.50788 4.62487 4.70968 4.73851 4.83787 4.97399 5.05321 5.11804 5.33020 5.38849 5.51467 5.60366 5.79804 5.87127 5.96624 6.00470 6.17822 6.32052 6.58348 6.77124 7.98513 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.012483 B = 0.004673 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.450940 B = 5990.616010 C = 7096.348783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.646 4.646 2 S 2.614 3.386 3 O -0.999 6.999 4 O -0.996 6.996 5 N -1.124 6.124 6 C 0.102 3.898 7 C 0.110 3.890 8 N -1.102 6.102 9 S 2.727 3.273 10 O -1.002 7.002 11 O -1.006 7.006 12 C -0.794 4.794 13 C -0.003 4.003 14 C -0.256 4.256 15 C -0.056 4.056 16 C -0.230 4.230 17 C 0.149 3.851 18 C -0.547 4.547 19 H 0.107 0.893 20 C 0.032 3.968 21 N -0.788 5.788 22 Si 1.060 2.940 23 H -0.261 1.261 24 H -0.269 1.269 25 H -0.245 1.245 26 H 0.149 0.851 27 H 0.150 0.850 28 H 0.153 0.847 29 H 0.417 0.583 30 H 0.093 0.907 31 H 0.108 0.892 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.425 0.575 35 H 0.125 0.875 36 H 0.130 0.870 37 H 0.125 0.875 38 H 0.101 0.899 39 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.578 1.409 -7.132 12.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.800 4.800 2 S 2.711 3.289 3 O -0.990 6.990 4 O -0.986 6.986 5 N -0.884 5.884 6 C -0.025 4.025 7 C -0.018 4.018 8 N -0.864 5.864 9 S 2.823 3.177 10 O -0.992 6.992 11 O -0.997 6.997 12 C -0.887 4.887 13 C -0.023 4.023 14 C -0.276 4.276 15 C -0.074 4.074 16 C -0.250 4.250 17 C 0.144 3.856 18 C -0.574 4.574 19 H 0.125 0.875 20 C -0.190 4.190 21 N -0.410 5.410 22 Si 0.878 3.122 23 H -0.185 1.185 24 H -0.194 1.194 25 H -0.169 1.169 26 H 0.167 0.833 27 H 0.168 0.832 28 H 0.171 0.829 29 H 0.252 0.748 30 H 0.111 0.889 31 H 0.126 0.874 32 H 0.100 0.900 33 H 0.089 0.911 34 H 0.262 0.738 35 H 0.143 0.857 36 H 0.147 0.853 37 H 0.143 0.857 38 H 0.119 0.881 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.001 2.455 -8.553 11.966 hybrid contribution -1.033 -1.063 1.949 2.449 sum -9.035 1.392 -6.604 11.277 Atomic orbital electron populations 1.30283 1.22067 1.14055 1.13632 1.04493 0.79848 0.72372 0.72180 1.93571 1.80254 1.39214 1.85977 1.93560 1.79384 1.62373 1.63318 1.55444 1.75158 1.21330 1.36446 1.21682 1.01035 0.81917 0.97889 1.21899 1.00278 0.81705 0.97894 1.54968 1.44579 1.24758 1.62090 1.00131 0.72657 0.71398 0.73525 1.93449 1.37166 1.86327 1.82231 1.93439 1.78986 1.39553 1.87720 1.30179 1.26191 1.11563 1.20809 1.20661 0.91394 0.97624 0.92615 1.20919 1.11675 0.96944 0.98057 1.21221 0.93846 0.94454 0.97912 1.21427 1.08309 1.01167 0.94059 1.17313 0.85937 0.89536 0.92779 1.21503 1.29351 0.96101 1.10436 0.87550 1.27655 0.98424 0.95548 0.97357 1.70560 1.08919 1.41809 1.19753 0.83747 0.75066 0.76500 0.76862 1.18487 1.19369 1.16864 0.83306 0.83195 0.82856 0.74833 0.88862 0.87434 0.90048 0.91123 0.73815 0.85677 0.85251 0.85664 0.88077 0.89173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -6.09 10.89 113.37 1.23 -4.85 16 2 S 2.61 55.54 6.10 -56.49 -0.34 55.20 16 3 O -1.00 -29.10 18.08 -127.65 -2.31 -31.41 16 4 O -1.00 -27.94 17.50 -127.65 -2.23 -30.17 16 5 N -1.12 -26.72 5.88 -187.49 -1.10 -27.82 16 6 C 0.10 2.30 6.27 86.38 0.54 2.85 16 7 C 0.11 3.51 4.42 86.38 0.38 3.89 16 8 N -1.10 -34.42 6.00 -187.50 -1.12 -35.55 16 9 S 2.73 110.32 5.44 -56.49 -0.31 110.01 16 10 O -1.00 -46.93 15.05 -128.00 -1.93 -48.85 16 11 O -1.01 -41.97 16.97 -128.00 -2.17 -44.14 16 12 C -0.79 -35.04 5.96 22.73 0.14 -34.90 16 13 C 0.00 -0.13 9.53 22.22 0.21 0.08 16 14 C -0.26 -9.86 10.05 22.46 0.23 -9.63 16 15 C -0.06 -2.22 10.02 22.22 0.22 -2.00 16 16 C -0.23 -10.40 7.82 22.73 0.18 -10.23 16 17 C 0.15 6.98 5.17 -21.29 -0.11 6.87 16 18 C -0.55 -25.17 4.68 23.46 0.11 -25.06 16 19 H 0.11 5.11 4.32 -2.91 -0.01 5.09 16 20 C 0.03 1.37 4.06 85.26 0.35 1.72 16 21 N -0.79 -34.78 12.50 21.83 0.27 -34.50 16 22 Si 1.06 39.00 29.97 68.60 2.06 41.05 16 23 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 24 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 25 H -0.25 -8.31 7.11 99.48 0.71 -7.60 16 26 H 0.15 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.15 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.15 0.81 8.14 -2.39 -0.02 0.80 16 29 H 0.42 10.98 8.62 -96.75 -0.83 10.15 16 30 H 0.09 1.93 7.69 -2.38 -0.02 1.91 16 31 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.08 2.87 5.71 -2.39 -0.01 2.86 16 33 H 0.07 2.57 6.21 -2.39 -0.01 2.55 16 34 H 0.43 9.81 8.65 -96.74 -0.84 8.97 16 35 H 0.13 4.69 7.32 -2.91 -0.02 4.66 16 36 H 0.13 4.12 8.06 -2.91 -0.02 4.09 16 37 H 0.13 4.18 8.06 -2.91 -0.02 4.15 16 38 H 0.10 4.69 6.73 -2.91 -0.02 4.67 16 39 H 0.29 13.36 6.38 -92.71 -0.59 12.77 16 Total: -1.00 -70.81 344.00 -6.08 -76.89 By element: Atomic # 1 Polarization: 40.94 SS G_CDS: -0.37 Total: 40.58 kcal Atomic # 6 Polarization: -74.75 SS G_CDS: 3.48 Total: -71.27 kcal Atomic # 7 Polarization: -95.92 SS G_CDS: -1.96 Total: -97.88 kcal Atomic # 8 Polarization: -145.94 SS G_CDS: -8.64 Total: -154.58 kcal Atomic # 14 Polarization: 39.00 SS G_CDS: 2.06 Total: 41.05 kcal Atomic # 16 Polarization: 165.86 SS G_CDS: -0.65 Total: 165.21 kcal Total: -70.81 -6.08 -76.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667105347.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.732 kcal (2) G-P(sol) polarization free energy of solvation -70.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.75 seconds