Wall clock time and date at job start Wed Apr 1 2020 04:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34229 * 116.99646 * 2 1 4 4 O 1.20825 * 120.00495 * 359.97438 * 3 2 1 5 5 C 1.50707 * 119.99793 * 180.02562 * 3 2 1 6 6 C 1.52997 * 109.46981 * 180.02562 * 5 3 2 7 7 N 1.46500 * 109.47180 * 180.02562 * 6 5 3 8 8 C 1.36937 * 119.99346 * 274.99679 * 7 6 5 9 9 H 1.08005 * 120.00083 * 142.16794 * 8 7 6 10 10 C 1.38813 * 120.00435 * 322.15922 * 8 7 6 11 11 N 1.31615 * 120.00304 * 157.71605 * 10 8 7 12 12 Si 1.86798 * 119.99823 * 337.72491 * 10 8 7 13 13 H 1.48498 * 109.47366 * 95.31376 * 12 10 8 14 14 H 1.48497 * 109.47182 * 215.31197 * 12 10 8 15 15 H 1.48503 * 109.47286 * 335.31314 * 12 10 8 16 16 S 1.65596 * 120.00657 * 94.99626 * 7 6 5 17 17 O 1.42102 * 106.40044 * 341.36681 * 16 7 6 18 18 O 1.42099 * 106.40552 * 208.45067 * 16 7 6 19 19 C 1.76196 * 107.21922 * 94.90563 * 16 7 6 20 20 C 1.38712 * 120.40274 * 85.10738 * 19 16 7 21 21 C 1.38563 * 118.44170 * 180.02562 * 20 19 16 22 22 C 1.38399 * 119.14281 * 359.97438 * 21 20 19 23 23 Cl 1.73599 * 119.63066 * 179.97438 * 22 21 20 24 24 N 1.31945 * 120.73255 * 359.97438 * 22 21 20 25 25 C 1.31903 * 121.71012 * 0.04640 * 24 22 21 26 26 H 1.09003 * 109.46790 * 60.00358 * 1 2 3 27 27 H 1.08996 * 109.47065 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47416 * 300.00208 * 1 2 3 29 29 H 1.08997 * 109.47162 * 60.00342 * 5 3 2 30 30 H 1.09003 * 109.46762 * 299.99825 * 5 3 2 31 31 H 1.08999 * 109.47609 * 59.99425 * 6 5 3 32 32 H 1.09003 * 109.46977 * 299.99385 * 6 5 3 33 33 H 0.96997 * 120.00759 * 180.02562 * 11 10 8 34 34 H 1.08004 * 120.77901 * 359.97438 * 20 19 16 35 35 H 1.07993 * 120.42721 * 179.72378 * 21 20 19 36 36 H 1.08002 * 119.61151 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0000 2.7421 0.0002 7 7 5.4630 2.8189 -0.0010 8 6 6.1530 2.7507 1.1798 9 1 7.0920 2.2190 1.2267 10 6 5.6459 3.3650 2.3167 11 7 6.0308 2.9629 3.5093 12 14 4.4169 4.7622 2.1538 13 1 3.0376 4.2242 2.2685 14 1 4.6517 5.7562 3.2317 15 1 4.5843 5.4172 0.8315 16 16 6.2823 2.9881 -1.4301 17 8 5.3829 2.5939 -2.4573 18 8 7.5544 2.3849 -1.2374 19 6 6.5778 4.7097 -1.6613 20 6 7.6835 5.3159 -1.0835 21 6 7.8763 6.6723 -1.2912 22 6 6.9656 7.3720 -2.0636 23 17 7.1945 9.0718 -2.3315 24 7 5.9254 6.7614 -2.5984 25 6 5.7114 5.4720 -2.4207 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 3.9557 0.7811 -0.8908 30 1 3.9564 0.7807 0.8892 31 1 3.6106 3.2358 0.8906 32 1 3.6100 3.2368 -0.8894 33 1 5.6762 3.3918 4.3037 34 1 8.3775 4.7443 -0.4850 35 1 8.7240 7.1777 -0.8528 36 1 4.8486 5.0068 -2.8740 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671024966.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:46 Heat of formation + Delta-G solvation = -115.249340 kcal Electronic energy + Delta-G solvation = -26723.583899 eV Core-core repulsion = 22554.841608 eV Total energy + Delta-G solvation = -4168.742291 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.042 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -40.25659 -39.92853 -36.93262 -36.67990 -36.20644 -36.02225 -34.79049 -32.71446 -32.49717 -31.01222 -30.72867 -27.65573 -25.12246 -23.73219 -23.62985 -23.46080 -20.61054 -18.77073 -17.97728 -17.62772 -17.22606 -16.79521 -16.61676 -16.53504 -16.36243 -16.08075 -15.42600 -14.43266 -14.40316 -14.26575 -13.97206 -13.53059 -13.24726 -13.12867 -12.92525 -12.83336 -12.71186 -12.38078 -11.89844 -11.80880 -11.61615 -11.41137 -11.24767 -11.10957 -11.08136 -10.91843 -10.70163 -10.61256 -10.48582 -10.30574 -10.17657 -9.91655 -9.48281 -9.31485 -9.09740 -8.51103 -6.98414 -4.45159 0.68768 1.26329 1.31402 1.76402 2.43960 2.84512 2.93380 3.02000 3.05878 3.54104 3.76889 3.94322 4.42781 4.51877 4.61344 4.84984 5.00977 5.01999 5.13443 5.18642 5.19841 5.33888 5.37422 5.48443 5.55713 5.71987 5.84801 5.85838 6.03726 6.10062 6.27116 6.54611 6.54843 6.64694 7.10738 7.68675 7.90946 7.95354 8.53348 8.60008 10.05780 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.012315 B = 0.004112 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.135081 B = 6808.328068 C = 7153.248560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.360 6.360 3 C 0.469 3.531 4 O -0.512 6.512 5 C -0.125 4.125 6 C 0.131 3.869 7 N -0.822 5.822 8 C -0.254 4.254 9 H 0.131 0.869 10 C 0.072 3.928 11 N -0.808 5.808 12 Si 0.867 3.133 13 H -0.259 1.259 14 H -0.280 1.280 15 H -0.257 1.257 16 S 2.535 3.465 17 O -0.995 6.995 18 O -0.963 6.963 19 C -0.708 4.708 20 C 0.036 3.964 21 C -0.179 4.179 22 C 0.201 3.799 23 Cl -0.039 7.039 24 N -0.497 5.497 25 C 0.199 3.801 26 H 0.061 0.939 27 H 0.098 0.902 28 H 0.061 0.939 29 H 0.113 0.887 30 H 0.124 0.876 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.286 0.714 34 H 0.161 0.839 35 H 0.148 0.852 36 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.273 1.265 -3.472 4.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.277 6.277 3 C 0.312 3.688 4 O -0.400 6.400 5 C -0.165 4.165 6 C 0.004 3.996 7 N -0.645 5.645 8 C -0.403 4.403 9 H 0.149 0.851 10 C -0.146 4.146 11 N -0.442 5.442 12 Si 0.693 3.307 13 H -0.185 1.185 14 H -0.207 1.207 15 H -0.181 1.181 16 S 2.636 3.364 17 O -0.985 6.985 18 O -0.953 6.953 19 C -0.787 4.787 20 C 0.009 3.991 21 C -0.200 4.200 22 C 0.037 3.963 23 Cl -0.011 7.011 24 N -0.209 5.209 25 C 0.041 3.959 26 H 0.080 0.920 27 H 0.116 0.884 28 H 0.079 0.921 29 H 0.131 0.869 30 H 0.142 0.858 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.178 0.822 35 H 0.166 0.834 36 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -3.759 1.676 -4.734 6.272 hybrid contribution -0.242 1.521 0.681 1.684 sum -4.001 3.197 -4.053 6.530 Atomic orbital electron populations 1.23216 0.76952 1.03333 1.02423 1.86534 1.23004 1.33810 1.84323 1.23917 0.92223 0.81099 0.71589 1.90649 1.67417 1.36318 1.45637 1.21801 0.86322 1.00953 1.07402 1.21117 0.80899 0.94240 1.03334 1.53996 1.11574 1.76787 1.22134 1.19491 1.09401 1.28740 0.82681 0.85141 1.25816 0.97268 0.96413 0.95127 1.69802 1.39409 1.36838 0.98174 0.87037 0.81488 0.82422 0.79753 1.18469 1.20660 1.18064 1.11482 0.74344 0.75430 0.75193 1.93366 1.64294 1.82065 1.58770 1.93412 1.41810 1.74387 1.85700 1.33391 1.03406 1.33902 1.08002 1.21405 0.93544 0.93152 0.90988 1.21932 1.01156 0.95441 1.01496 1.21807 0.92543 0.87301 0.94689 1.98389 1.95768 1.11529 1.95409 1.67030 1.19515 1.11818 1.22536 1.22416 0.96306 0.86964 0.90240 0.92029 0.88364 0.92052 0.86851 0.85762 0.90931 0.89829 0.90286 0.82171 0.83404 0.80796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 101.05 1.07 1.44 16 2 O -0.36 -5.18 10.57 -39.25 -0.41 -5.59 16 3 C 0.47 7.80 7.96 36.01 0.29 8.09 16 4 O -0.51 -9.65 15.73 -18.75 -0.29 -9.95 16 5 C -0.13 -2.10 6.11 -27.88 -0.17 -2.27 16 6 C 0.13 2.51 3.60 -4.04 -0.01 2.50 16 7 N -0.82 -16.84 2.46 -59.91 -0.15 -16.99 16 8 C -0.25 -5.61 9.56 -15.06 -0.14 -5.76 16 9 H 0.13 3.09 7.65 -52.48 -0.40 2.69 16 10 C 0.07 1.62 5.32 -17.43 -0.09 1.53 16 11 N -0.81 -18.90 13.97 55.49 0.78 -18.13 16 12 Si 0.87 18.17 25.05 -169.99 -4.26 13.91 16 13 H -0.26 -5.39 6.68 56.52 0.38 -5.01 16 14 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 15 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 16 S 2.53 51.82 5.62 -107.50 -0.60 51.21 16 17 O -1.00 -20.93 16.00 -57.17 -0.91 -21.84 16 18 O -0.96 -21.74 16.53 -57.17 -0.94 -22.68 16 19 C -0.71 -13.45 5.99 -39.44 -0.24 -13.68 16 20 C 0.04 0.62 9.65 -39.29 -0.38 0.24 16 21 C -0.18 -2.78 9.88 -39.40 -0.39 -3.16 16 22 C 0.20 3.34 7.27 -17.44 -0.13 3.21 16 23 Cl -0.04 -0.55 29.11 -51.86 -1.51 -2.06 16 24 N -0.50 -9.11 10.34 -10.36 -0.11 -9.21 16 25 C 0.20 3.66 10.69 -17.56 -0.19 3.47 16 26 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 27 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 29 H 0.11 1.77 8.14 -51.93 -0.42 1.35 16 30 H 0.12 1.99 8.14 -51.93 -0.42 1.57 16 31 H 0.07 1.46 3.04 -51.93 -0.16 1.30 16 32 H 0.08 1.53 7.43 -51.93 -0.39 1.14 16 33 H 0.29 6.23 8.31 -40.82 -0.34 5.89 16 34 H 0.16 2.56 7.82 -52.48 -0.41 2.15 16 35 H 0.15 1.78 8.06 -52.49 -0.42 1.36 16 36 H 0.18 2.91 7.53 -52.49 -0.39 2.51 16 LS Contribution 343.39 15.07 5.17 5.17 Total: -1.00 -28.24 343.39 -7.08 -35.32 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -3.45 Total: 5.23 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -0.39 Total: -4.39 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: 0.52 Total: -44.33 kcal Atomic # 8 Polarization: -57.50 SS G_CDS: -2.57 Total: -60.07 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -4.26 Total: 13.91 kcal Atomic # 16 Polarization: 51.82 SS G_CDS: -0.60 Total: 51.21 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.51 Total: -2.06 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.24 -7.08 -35.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671024966.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.928 kcal (2) G-P(sol) polarization free energy of solvation -28.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds