Wall clock time and date at job start Wed Apr 1 2020 04:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34229 * 116.99646 * 2 1 4 4 O 1.20825 * 120.00495 * 359.97438 * 3 2 1 5 5 C 1.50707 * 119.99793 * 180.02562 * 3 2 1 6 6 C 1.52997 * 109.46981 * 180.02562 * 5 3 2 7 7 N 1.46500 * 109.47180 * 180.02562 * 6 5 3 8 8 C 1.36937 * 119.99346 * 274.99679 * 7 6 5 9 9 H 1.08005 * 120.00083 * 142.16794 * 8 7 6 10 10 C 1.38813 * 120.00435 * 322.15922 * 8 7 6 11 11 N 1.31615 * 120.00304 * 157.71605 * 10 8 7 12 12 Si 1.86798 * 119.99823 * 337.72491 * 10 8 7 13 13 H 1.48498 * 109.47366 * 95.31376 * 12 10 8 14 14 H 1.48497 * 109.47182 * 215.31197 * 12 10 8 15 15 H 1.48503 * 109.47286 * 335.31314 * 12 10 8 16 16 S 1.65596 * 120.00657 * 94.99626 * 7 6 5 17 17 O 1.42102 * 106.40044 * 341.36681 * 16 7 6 18 18 O 1.42099 * 106.40552 * 208.45067 * 16 7 6 19 19 C 1.76196 * 107.21922 * 94.90563 * 16 7 6 20 20 C 1.38712 * 120.40274 * 85.10738 * 19 16 7 21 21 C 1.38563 * 118.44170 * 180.02562 * 20 19 16 22 22 C 1.38399 * 119.14281 * 359.97438 * 21 20 19 23 23 Cl 1.73599 * 119.63066 * 179.97438 * 22 21 20 24 24 N 1.31945 * 120.73255 * 359.97438 * 22 21 20 25 25 C 1.31903 * 121.71012 * 0.04640 * 24 22 21 26 26 H 1.09003 * 109.46790 * 60.00358 * 1 2 3 27 27 H 1.08996 * 109.47065 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47416 * 300.00208 * 1 2 3 29 29 H 1.08997 * 109.47162 * 60.00342 * 5 3 2 30 30 H 1.09003 * 109.46762 * 299.99825 * 5 3 2 31 31 H 1.08999 * 109.47609 * 59.99425 * 6 5 3 32 32 H 1.09003 * 109.46977 * 299.99385 * 6 5 3 33 33 H 0.96997 * 120.00759 * 180.02562 * 11 10 8 34 34 H 1.08004 * 120.77901 * 359.97438 * 20 19 16 35 35 H 1.07993 * 120.42721 * 179.72378 * 21 20 19 36 36 H 1.08002 * 119.61151 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0000 2.7421 0.0002 7 7 5.4630 2.8189 -0.0010 8 6 6.1530 2.7507 1.1798 9 1 7.0920 2.2190 1.2267 10 6 5.6459 3.3650 2.3167 11 7 6.0308 2.9629 3.5093 12 14 4.4169 4.7622 2.1538 13 1 3.0376 4.2242 2.2685 14 1 4.6517 5.7562 3.2317 15 1 4.5843 5.4172 0.8315 16 16 6.2823 2.9881 -1.4301 17 8 5.3829 2.5939 -2.4573 18 8 7.5544 2.3849 -1.2374 19 6 6.5778 4.7097 -1.6613 20 6 7.6835 5.3159 -1.0835 21 6 7.8763 6.6723 -1.2912 22 6 6.9656 7.3720 -2.0636 23 17 7.1945 9.0718 -2.3315 24 7 5.9254 6.7614 -2.5984 25 6 5.7114 5.4720 -2.4207 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 3.9557 0.7811 -0.8908 30 1 3.9564 0.7807 0.8892 31 1 3.6106 3.2358 0.8906 32 1 3.6100 3.2368 -0.8894 33 1 5.6762 3.3918 4.3037 34 1 8.3775 4.7443 -0.4850 35 1 8.7240 7.1777 -0.8528 36 1 4.8486 5.0068 -2.8740 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671024966.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:43 Heat of formation + Delta-G solvation = -134.119525 kcal Electronic energy + Delta-G solvation = -26724.402171 eV Core-core repulsion = 22554.841608 eV Total energy + Delta-G solvation = -4169.560563 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.042 amu Computer time = 2.68 seconds Orbital eigenvalues (eV) -41.52172 -41.29852 -38.39186 -37.98572 -37.89568 -37.37660 -36.59279 -34.33308 -33.88208 -32.40311 -32.17692 -28.69296 -26.68055 -25.16250 -25.03679 -24.92667 -21.89510 -20.43109 -19.51263 -19.01159 -18.72945 -18.30828 -18.03218 -17.92127 -17.69052 -17.47051 -16.91356 -16.02674 -15.73354 -15.67676 -15.32898 -14.96486 -14.73065 -14.51110 -14.46192 -14.14825 -14.13618 -13.74495 -13.20620 -13.10028 -12.95902 -12.89392 -12.87513 -12.75657 -12.60260 -12.57078 -12.18373 -12.12516 -11.86141 -11.75521 -11.57847 -11.31093 -10.96413 -10.90274 -10.44723 -10.15895 -8.65844 -6.19308 -0.73730 -0.33278 -0.07679 0.49525 1.13852 1.22032 1.34251 1.36587 1.69617 2.08778 2.12119 2.38412 2.74790 2.94605 3.20765 3.37148 3.68958 3.72633 3.79820 3.87258 4.03933 4.07513 4.33940 4.35526 4.38859 4.43121 4.50763 4.61807 4.71259 4.72874 4.84643 5.10658 5.20513 5.33996 5.48140 6.18224 6.30906 6.68630 6.87302 6.92899 8.43730 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.012315 B = 0.004112 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.135081 B = 6808.328068 C = 7153.248560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.361 6.361 3 C 0.474 3.526 4 O -0.539 6.539 5 C -0.126 4.126 6 C 0.121 3.879 7 N -0.832 5.832 8 C -0.274 4.274 9 H 0.107 0.893 10 C 0.056 3.944 11 N -0.852 5.852 12 Si 0.898 3.102 13 H -0.262 1.262 14 H -0.283 1.283 15 H -0.258 1.258 16 S 2.588 3.412 17 O -0.996 6.996 18 O -0.983 6.983 19 C -0.729 4.729 20 C 0.029 3.971 21 C -0.169 4.169 22 C 0.195 3.805 23 Cl -0.011 7.011 24 N -0.511 5.511 25 C 0.194 3.806 26 H 0.064 0.936 27 H 0.135 0.865 28 H 0.060 0.940 29 H 0.125 0.875 30 H 0.128 0.872 31 H 0.063 0.937 32 H 0.091 0.909 33 H 0.288 0.712 34 H 0.171 0.829 35 H 0.187 0.813 36 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.416 2.197 -4.951 6.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.277 6.277 3 C 0.318 3.682 4 O -0.429 6.429 5 C -0.165 4.165 6 C -0.005 4.005 7 N -0.658 5.658 8 C -0.418 4.418 9 H 0.124 0.876 10 C -0.158 4.158 11 N -0.488 5.488 12 Si 0.724 3.276 13 H -0.188 1.188 14 H -0.209 1.209 15 H -0.182 1.182 16 S 2.688 3.312 17 O -0.986 6.986 18 O -0.973 6.973 19 C -0.812 4.812 20 C 0.002 3.998 21 C -0.190 4.190 22 C 0.031 3.969 23 Cl 0.018 6.982 24 N -0.223 5.223 25 C 0.036 3.964 26 H 0.083 0.917 27 H 0.153 0.847 28 H 0.079 0.921 29 H 0.143 0.857 30 H 0.146 0.854 31 H 0.081 0.919 32 H 0.109 0.891 33 H 0.099 0.901 34 H 0.188 0.812 35 H 0.204 0.796 36 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -3.913 2.557 -6.122 7.703 hybrid contribution -0.174 1.346 0.807 1.578 sum -4.087 3.903 -5.315 7.758 Atomic orbital electron populations 1.23594 0.74689 1.05862 1.02582 1.86512 1.25168 1.32332 1.83655 1.23774 0.92046 0.81384 0.70992 1.90635 1.67910 1.37260 1.47074 1.21759 0.86991 0.99618 1.08175 1.21263 0.80198 0.95850 1.03177 1.53605 1.12014 1.78819 1.21343 1.19031 1.08751 1.30308 0.83738 0.87569 1.25950 0.97922 0.97074 0.94825 1.69838 1.41883 1.38424 0.98642 0.86575 0.80522 0.81272 0.79273 1.18776 1.20909 1.18187 1.08339 0.73500 0.75215 0.74142 1.93388 1.64565 1.82399 1.58248 1.93414 1.42637 1.75207 1.86027 1.32952 1.05429 1.32275 1.10566 1.21678 0.93115 0.94357 0.90625 1.22297 1.01762 0.94586 1.00359 1.22238 0.92065 0.88661 0.93958 1.98403 1.95548 1.09132 1.95167 1.67101 1.20419 1.11637 1.23165 1.22619 0.96454 0.87313 0.90048 0.91749 0.84697 0.92092 0.85689 0.85398 0.91879 0.89094 0.90139 0.81202 0.79609 0.79694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.56 113.37 1.20 1.70 16 2 O -0.36 -9.89 10.57 -51.41 -0.54 -10.43 16 3 C 0.47 15.48 7.96 71.24 0.57 16.04 16 4 O -0.54 -20.06 15.73 21.97 0.35 -19.72 16 5 C -0.13 -4.19 6.11 29.85 0.18 -4.01 16 6 C 0.12 4.64 3.60 86.38 0.31 4.95 16 7 N -0.83 -34.07 2.46 -343.45 -0.85 -34.92 16 8 C -0.27 -12.42 9.56 84.03 0.80 -11.62 16 9 H 0.11 5.25 7.65 -2.91 -0.02 5.23 16 10 C 0.06 2.60 5.32 84.86 0.45 3.05 16 11 N -0.85 -41.30 13.97 21.65 0.30 -41.00 16 12 Si 0.90 37.60 25.05 68.60 1.72 39.32 16 13 H -0.26 -10.93 6.68 99.48 0.66 -10.26 16 14 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 15 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 16 S 2.59 103.24 5.62 -56.49 -0.32 102.92 16 17 O -1.00 -40.25 16.00 -128.00 -2.05 -42.30 16 18 O -0.98 -43.66 16.53 -128.00 -2.12 -45.78 16 19 C -0.73 -26.49 5.99 22.36 0.13 -26.36 16 20 C 0.03 0.94 9.65 22.46 0.22 1.15 16 21 C -0.17 -4.71 9.88 22.39 0.22 -4.49 16 22 C 0.19 5.91 7.27 84.71 0.62 6.52 16 23 Cl -0.01 -0.28 29.11 -2.72 -0.08 -0.36 16 24 N -0.51 -17.52 10.34 -186.70 -1.93 -19.45 16 25 C 0.19 6.77 10.69 84.66 0.90 7.67 16 26 H 0.06 1.24 8.13 -2.39 -0.02 1.22 16 27 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.06 1.22 8.13 -2.39 -0.02 1.20 16 29 H 0.13 3.80 8.14 -2.39 -0.02 3.78 16 30 H 0.13 4.14 8.14 -2.39 -0.02 4.12 16 31 H 0.06 2.56 3.04 -2.39 -0.01 2.55 16 32 H 0.09 3.27 7.43 -2.39 -0.02 3.25 16 33 H 0.29 13.02 8.31 -92.71 -0.77 12.24 16 34 H 0.17 5.15 7.82 -2.91 -0.02 5.13 16 35 H 0.19 3.68 8.06 -2.91 -0.02 3.66 16 36 H 0.19 5.85 7.53 -2.91 -0.02 5.83 16 Total: -1.00 -59.74 343.39 1.19 -58.55 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: 1.09 Total: 18.53 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: 5.61 Total: -5.38 kcal Atomic # 7 Polarization: -92.89 SS G_CDS: -2.47 Total: -95.36 kcal Atomic # 8 Polarization: -113.87 SS G_CDS: -4.36 Total: -118.23 kcal Atomic # 14 Polarization: 37.60 SS G_CDS: 1.72 Total: 39.32 kcal Atomic # 16 Polarization: 103.24 SS G_CDS: -0.32 Total: 102.92 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -0.08 Total: -0.36 kcal Total: -59.74 1.19 -58.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671024966.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.568 kcal (2) G-P(sol) polarization free energy of solvation -59.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.68 seconds