Wall clock time and date at job start Wed Apr 1 2020 05:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.47347 * 2 1 4 4 C 1.38752 * 119.66484 * 270.02036 * 3 2 1 5 5 C 1.36665 * 120.49498 * 179.97438 * 4 3 2 6 6 C 1.39826 * 119.71833 * 359.96132 * 5 4 3 7 7 C 1.46616 * 121.04765 * 180.02562 * 6 5 4 8 8 C 1.50703 * 120.91239 * 0.02562 * 7 6 5 9 9 O 1.45199 * 109.46928 * 179.97438 * 8 7 6 10 10 C 1.34230 * 116.99614 * 179.97438 * 9 8 7 11 11 O 1.20824 * 120.00179 * 0.02562 * 10 9 8 12 12 C 1.50706 * 119.99717 * 179.97438 * 10 9 8 13 13 S 1.81001 * 109.47096 * 180.02562 * 12 10 9 14 14 C 1.76203 * 100.00081 * 180.02562 * 13 12 10 15 15 H 1.07996 * 119.99869 * 0.02562 * 14 13 12 16 16 C 1.38797 * 119.99847 * 179.97438 * 14 13 12 17 17 N 1.31636 * 120.00248 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99731 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46734 * 60.00211 * 18 16 14 20 20 H 1.48499 * 109.46912 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47343 * 300.00296 * 18 16 14 22 22 C 1.35706 * 118.17413 * 180.27618 * 7 6 5 23 23 C 1.41181 * 119.80085 * 359.55126 * 22 7 6 24 24 O 1.21776 * 119.16233 * 180.24394 * 23 22 7 25 25 O 1.34198 * 121.67940 * 0.43746 * 23 22 7 26 26 C 1.35009 * 121.47016 * 359.80402 * 25 23 22 27 27 C 1.37915 * 119.66242 * 89.99502 * 3 2 1 28 28 H 1.08996 * 109.47002 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47404 * 300.00142 * 1 2 3 30 30 H 1.09000 * 109.46559 * 59.99788 * 1 2 3 31 31 H 1.09002 * 109.47404 * 239.99858 * 2 1 3 32 32 H 1.09001 * 109.47186 * 119.99793 * 2 1 3 33 33 H 1.07999 * 119.75052 * 359.97438 * 4 3 2 34 34 H 1.07997 * 120.13718 * 180.02562 * 5 4 3 35 35 H 1.09002 * 109.47152 * 59.99934 * 8 7 6 36 36 H 1.09001 * 109.46980 * 300.00034 * 8 7 6 37 37 H 1.09000 * 109.47303 * 300.00327 * 12 10 9 38 38 H 1.09003 * 109.46535 * 60.00663 * 12 10 9 39 39 H 0.96998 * 119.99512 * 179.97438 * 17 16 14 40 40 H 1.08003 * 120.10233 * 179.72714 * 22 7 6 41 41 H 1.08002 * 120.09211 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2609 2.0684 -1.2057 5 6 2.7160 3.3569 -1.2255 6 6 2.9520 4.0273 -0.0213 7 6 3.4397 5.4099 -0.0085 8 6 3.7008 6.1507 -1.2947 9 8 4.1727 7.4905 -0.9942 10 6 4.4537 8.2860 -2.0383 11 8 4.3095 7.8765 -3.1658 12 6 4.9478 9.6904 -1.8041 13 16 5.2342 10.5025 -3.3961 14 6 5.7898 12.0794 -2.8395 15 1 5.8621 12.2839 -1.7816 16 6 6.1354 13.0582 -3.7609 17 7 6.0477 12.8088 -5.0504 18 14 6.7236 14.7302 -3.1708 19 1 7.9491 14.5620 -2.3492 20 1 7.0270 15.5901 -4.3429 21 1 5.6619 15.3676 -2.3514 22 6 3.6544 6.0025 1.1933 23 6 3.3980 5.2881 2.3837 24 8 3.5905 5.8327 3.4557 25 8 2.9511 4.0228 2.3639 26 6 2.7219 3.3744 1.2022 27 6 2.2598 2.0644 1.1984 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.0778 1.5503 -2.1354 34 1 2.8915 3.8556 -2.1672 35 1 2.7785 6.2117 -1.8725 36 1 4.4571 5.6197 -1.8727 37 1 4.2005 10.2493 -1.2407 38 1 5.8796 9.6581 -1.2394 39 1 6.2889 13.4931 -5.6942 40 1 4.0177 7.0186 1.2390 41 1 2.0788 1.5514 2.1314 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000046255647.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:39 Heat of formation + Delta-G solvation = -123.937230 kcal Electronic energy + Delta-G solvation = -26249.938808 eV Core-core repulsion = 22186.792975 eV Total energy + Delta-G solvation = -4063.145833 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.091 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.26291 -40.29449 -39.58282 -37.69592 -36.99004 -35.51880 -33.58938 -32.52846 -31.26404 -30.17223 -29.51866 -28.07961 -25.60112 -25.07046 -24.29713 -22.52334 -22.36659 -21.28326 -19.25835 -18.57131 -17.93960 -17.71351 -17.11895 -17.09902 -16.58420 -16.11065 -15.69354 -15.46544 -15.20846 -14.88225 -14.36292 -14.30838 -14.22364 -14.19890 -14.03629 -13.78049 -13.55905 -13.05362 -12.75006 -12.60509 -12.51945 -12.30339 -12.08365 -12.02728 -11.70120 -11.47669 -11.15321 -11.11450 -11.08488 -10.87011 -10.57246 -10.36331 -10.23291 -9.96542 -9.30324 -9.14776 -8.74456 -8.44350 -6.66800 -6.31751 -4.05350 -0.20335 0.59321 1.07236 2.04090 2.31849 2.45988 2.47284 3.16878 3.19858 3.21661 3.24524 3.36610 3.72561 3.82565 3.92564 4.10766 4.14389 4.37166 4.52192 4.59677 4.73705 4.78965 4.81807 4.88063 4.90285 4.96435 5.04430 5.07862 5.26382 5.30757 5.35089 5.39642 5.45893 5.54360 5.61249 5.67665 5.68316 5.84665 5.92851 5.99575 6.10366 6.40782 6.85980 7.16840 7.51246 7.94014 8.25909 9.13971 10.75647 Molecular weight = 348.09amu Principal moments of inertia in cm(-1) A = 0.020764 B = 0.001920 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.135784 B =14581.703994 C =15813.531025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.089 4.089 3 C -0.029 4.029 4 C -0.136 4.136 5 C -0.055 4.055 6 C -0.148 4.148 7 C 0.017 3.983 8 C 0.098 3.902 9 O -0.357 6.357 10 C 0.484 3.516 11 O -0.484 6.484 12 C -0.130 4.130 13 S -0.057 6.057 14 C -0.538 4.538 15 H 0.077 0.923 16 C 0.075 3.925 17 N -0.868 5.868 18 Si 0.922 3.078 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.273 1.273 22 C -0.225 4.225 23 C 0.511 3.489 24 O -0.459 6.459 25 O -0.273 6.273 26 C 0.153 3.847 27 C -0.133 4.133 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.136 0.864 34 H 0.141 0.859 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.271 0.729 40 H 0.176 0.824 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.742 -26.437 9.345 29.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.126 4.126 3 C -0.029 4.029 4 C -0.154 4.154 5 C -0.073 4.073 6 C -0.149 4.149 7 C 0.016 3.984 8 C 0.025 3.975 9 O -0.276 6.276 10 C 0.325 3.675 11 O -0.368 6.368 12 C -0.277 4.277 13 S 0.170 5.830 14 C -0.686 4.686 15 H 0.095 0.905 16 C -0.134 4.134 17 N -0.502 5.502 18 Si 0.748 3.252 19 H -0.198 1.198 20 H -0.207 1.207 21 H -0.198 1.198 22 C -0.244 4.244 23 C 0.359 3.641 24 O -0.346 6.346 25 O -0.185 6.185 26 C 0.108 3.892 27 C -0.151 4.151 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.154 0.846 34 H 0.159 0.841 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.124 0.876 38 H 0.124 0.876 39 H 0.080 0.920 40 H 0.193 0.807 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -9.849 -26.732 8.457 29.718 hybrid contribution 0.586 1.641 1.416 2.246 sum -9.263 -25.091 9.873 28.510 Atomic orbital electron populations 1.21768 0.93987 1.02275 1.02626 1.20663 0.96690 0.91510 1.03786 1.19949 0.94700 0.96363 0.91864 1.20827 1.01468 0.94921 0.98162 1.20964 0.95200 0.94463 0.96639 1.18786 1.08523 0.93838 0.93710 1.21196 0.90633 0.91228 0.95328 1.21646 1.01643 0.81129 0.93129 1.86486 1.77709 1.24210 1.39155 1.23388 0.74079 0.87490 0.82504 1.90683 1.47750 1.74555 1.23842 1.23340 1.04774 0.90545 1.09089 1.85401 1.86375 1.11907 0.99344 1.22799 1.52023 0.98135 0.95609 0.90535 1.25002 0.94829 0.99101 0.94505 1.69997 1.44967 1.34722 1.00547 0.86168 0.79282 0.81482 0.78282 1.19796 1.20750 1.19803 1.22546 1.07473 1.04035 0.90372 1.19264 0.75812 0.78027 0.90948 1.90997 1.48190 1.62261 1.33186 1.83551 1.71797 1.29829 1.33328 1.18969 0.96480 0.91951 0.81806 1.20392 1.03756 0.91424 0.99548 0.91906 0.92271 0.92214 0.90121 0.90304 0.84598 0.84093 0.88130 0.88116 0.87629 0.87631 0.91966 0.80654 0.83854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.52 9.89 37.16 0.37 -0.15 16 2 C -0.09 -0.32 6.05 -27.88 -0.17 -0.49 16 3 C -0.03 -0.16 5.14 -104.55 -0.54 -0.70 16 4 C -0.14 -0.77 9.61 -39.96 -0.38 -1.15 16 5 C -0.05 -0.38 9.47 -39.56 -0.37 -0.75 16 6 C -0.15 -1.35 5.87 -105.04 -0.62 -1.97 16 7 C 0.02 0.18 6.08 -102.15 -0.62 -0.44 16 8 C 0.10 1.06 4.70 36.01 0.17 1.23 16 9 O -0.36 -5.00 8.76 -39.26 -0.34 -5.35 16 10 C 0.48 8.44 7.98 36.01 0.29 8.73 16 11 O -0.48 -9.60 15.61 -18.75 -0.29 -9.89 16 12 C -0.13 -2.50 6.27 36.01 0.23 -2.27 16 13 S -0.06 -1.45 20.58 -107.50 -2.21 -3.67 16 14 C -0.54 -14.77 9.50 30.94 0.29 -14.47 16 15 H 0.08 1.99 7.80 -52.49 -0.41 1.58 16 16 C 0.08 2.08 5.49 -17.43 -0.10 1.99 16 17 N -0.87 -25.31 13.22 55.49 0.73 -24.58 16 18 Si 0.92 20.90 29.55 -169.99 -5.02 15.87 16 19 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 22 C -0.23 -2.67 9.31 -39.37 -0.37 -3.04 16 23 C 0.51 6.83 7.89 31.85 0.25 7.08 16 24 O -0.46 -7.53 17.91 -19.58 -0.35 -7.88 16 25 O -0.27 -3.28 9.82 -20.69 -0.20 -3.48 16 26 C 0.15 1.48 6.76 -38.45 -0.26 1.22 16 27 C -0.13 -0.96 9.64 -39.45 -0.38 -1.34 16 28 H 0.06 0.17 8.14 -51.93 -0.42 -0.26 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.08 0.21 8.08 -51.93 -0.42 -0.21 16 32 H 0.08 0.23 8.08 -51.93 -0.42 -0.19 16 33 H 0.14 0.48 8.06 -52.49 -0.42 0.05 16 34 H 0.14 0.76 7.27 -52.49 -0.38 0.37 16 35 H 0.10 0.98 8.13 -51.93 -0.42 0.56 16 36 H 0.10 0.98 8.13 -51.93 -0.42 0.56 16 37 H 0.11 1.88 8.14 -51.92 -0.42 1.46 16 38 H 0.11 1.88 8.14 -51.92 -0.42 1.46 16 39 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 40 H 0.18 2.11 7.03 -52.48 -0.37 1.74 16 41 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 376.08 15.07 5.67 5.67 Total: -1.00 -33.68 376.08 -9.17 -42.85 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: -4.94 Total: -3.03 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: -2.21 Total: -6.53 kcal Atomic # 7 Polarization: -25.31 SS G_CDS: 0.73 Total: -24.58 kcal Atomic # 8 Polarization: -25.40 SS G_CDS: -1.19 Total: -26.59 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: -1.45 SS G_CDS: -2.21 Total: -3.67 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.68 -9.17 -42.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046255647.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.083 kcal (2) G-P(sol) polarization free energy of solvation -33.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds