Wall clock time and date at job start Wed Apr 1 2020 05:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34222 * 117.00059 * 2 1 4 4 O 1.20829 * 119.99993 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99968 * 180.02562 * 3 2 1 6 6 N 1.46505 * 109.47122 * 179.97438 * 5 3 2 7 7 C 1.36694 * 119.99961 * 95.16106 * 6 5 3 8 8 H 1.07998 * 120.00318 * 225.88536 * 7 6 5 9 9 C 1.39169 * 119.99775 * 45.61139 * 7 6 5 10 10 N 1.31283 * 120.00542 * 6.46891 * 9 7 6 11 11 Si 1.86804 * 120.00059 * 186.46998 * 9 7 6 12 12 H 1.48507 * 109.47024 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47277 * 119.99745 * 11 9 7 14 14 H 1.48499 * 109.46949 * 240.00194 * 11 9 7 15 15 C 1.34770 * 120.00034 * 275.16441 * 6 5 3 16 16 O 1.21571 * 120.00048 * 355.37784 * 15 6 5 17 17 C 1.48068 * 120.00198 * 175.37972 * 15 6 5 18 18 C 1.40362 * 119.25223 * 185.98408 * 17 15 6 19 19 C 1.36456 * 119.81444 * 179.69954 * 18 17 15 20 20 C 1.40789 * 118.26420 * 0.57789 * 19 18 17 21 21 C 1.40415 * 121.23851 * 179.66285 * 20 19 18 22 22 C 1.36124 * 119.67354 * 180.02562 * 21 20 19 23 23 C 1.39543 * 120.89027 * 0.02626 * 22 21 20 24 24 Cl 1.73606 * 119.46929 * 179.97438 * 23 22 21 25 25 C 1.36129 * 121.05627 * 359.92737 * 23 22 21 26 26 C 1.40777 * 119.72838 * 0.08899 * 25 23 22 27 27 N 1.31997 * 119.24731 * 6.25632 * 17 15 6 28 28 H 1.09001 * 109.47517 * 60.00368 * 1 2 3 29 29 H 1.09000 * 109.47395 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47575 * 300.00119 * 1 2 3 31 31 H 1.08997 * 109.47395 * 59.99907 * 5 3 2 32 32 H 1.08994 * 109.47059 * 299.99467 * 5 3 2 33 33 H 0.96998 * 120.00583 * 180.02562 * 10 9 7 34 34 H 1.08001 * 120.08924 * 0.02562 * 18 17 15 35 35 H 1.08002 * 120.86926 * 180.26927 * 19 18 17 36 36 H 1.08010 * 120.15935 * 0.02562 * 21 20 19 37 37 H 1.07999 * 119.55155 * 179.97438 * 22 21 20 38 38 H 1.07989 * 120.13910 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9817 2.6797 -0.0011 7 6 4.2780 3.3052 1.1777 8 1 3.8855 4.2908 1.3796 9 6 5.0809 2.6695 2.1200 10 7 5.6572 1.5267 1.8277 11 14 5.3387 3.4422 3.8011 12 1 4.5853 4.7196 3.8795 13 1 4.8499 2.5146 4.8526 14 1 6.7853 3.7067 4.0077 15 6 4.0716 3.3554 -1.1637 16 8 3.8900 2.7780 -2.2180 17 6 4.3916 4.8011 -1.1570 18 6 4.3571 5.5168 -2.3639 19 6 4.6440 6.8508 -2.3700 20 6 4.9807 7.4659 -1.1492 21 6 5.2939 8.8332 -1.0847 22 6 5.6155 9.3951 0.1127 23 6 5.6392 8.6304 1.2797 24 17 6.0551 9.3847 2.7869 25 6 5.3404 7.3025 1.2553 26 6 5.0032 6.6851 0.0359 27 7 4.7080 5.3863 -0.0169 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 3.9557 0.7808 -0.8908 32 1 3.9563 0.7806 0.8891 33 1 6.2166 1.0835 2.4846 34 1 4.0991 5.0141 -3.2843 35 1 4.6184 7.4190 -3.2882 36 1 5.2796 9.4360 -1.9808 37 1 5.8565 10.4468 0.1600 38 1 5.3628 6.7248 2.1674 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084112690.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:02 Heat of formation + Delta-G solvation = -43.542867 kcal Electronic energy + Delta-G solvation = -27999.931231 eV Core-core repulsion = 23834.687509 eV Total energy + Delta-G solvation = -4165.243721 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.071 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.64739 -39.81621 -38.54272 -37.10359 -35.96287 -35.67284 -34.93353 -33.21366 -31.69703 -30.45361 -29.81137 -28.63665 -26.56544 -25.28183 -24.10719 -23.27286 -22.02328 -20.94194 -19.66556 -18.38836 -17.64954 -17.17345 -17.00212 -16.40713 -15.82723 -15.49518 -15.25151 -15.00823 -14.58935 -14.37516 -14.24938 -14.13599 -13.59620 -13.44393 -13.22981 -12.85939 -12.82195 -12.72888 -12.30637 -11.93843 -11.75455 -11.56349 -11.41310 -11.31707 -11.07796 -10.95486 -10.88450 -10.82344 -10.35852 -10.27996 -10.18853 -9.80621 -9.36872 -9.21158 -8.51563 -8.43724 -8.10900 -7.59542 -6.49450 -4.16570 0.47354 0.83557 2.11085 2.17590 2.71026 3.00938 3.10047 3.18750 3.23430 3.27764 3.84585 4.06355 4.30981 4.56684 4.59046 4.75314 4.94971 4.96126 5.06920 5.19242 5.27831 5.42482 5.46123 5.48951 5.59294 5.75792 5.87223 5.87917 6.01245 6.07357 6.19074 6.23267 6.32763 6.49729 6.59858 6.73003 6.95060 6.97133 7.50723 7.64354 8.25380 8.39733 8.53378 8.93779 9.19063 9.63438 10.54639 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.011522 B = 0.004086 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2429.629387 B = 6851.624884 C = 8383.578693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.366 6.366 3 C 0.447 3.553 4 O -0.507 6.507 5 C 0.119 3.881 6 N -0.394 5.394 7 C -0.290 4.290 8 H 0.122 0.878 9 C 0.038 3.962 10 N -0.871 5.871 11 Si 0.921 3.079 12 H -0.262 1.262 13 H -0.280 1.280 14 H -0.277 1.277 15 C 0.518 3.482 16 O -0.594 6.594 17 C 0.148 3.852 18 C -0.118 4.118 19 C -0.080 4.080 20 C -0.101 4.101 21 C -0.084 4.084 22 C -0.117 4.117 23 C -0.028 4.028 24 Cl -0.074 7.074 25 C -0.069 4.069 26 C 0.126 3.874 27 N -0.392 5.392 28 H 0.056 0.944 29 H 0.093 0.907 30 H 0.057 0.943 31 H 0.104 0.896 32 H 0.152 0.848 33 H 0.274 0.726 34 H 0.145 0.855 35 H 0.139 0.861 36 H 0.135 0.865 37 H 0.132 0.868 38 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.367 8.842 -2.160 9.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.283 6.283 3 C 0.289 3.711 4 O -0.393 6.393 5 C -0.006 4.006 6 N -0.109 5.109 7 C -0.419 4.419 8 H 0.139 0.861 9 C -0.167 4.167 10 N -0.509 5.509 11 Si 0.747 3.253 12 H -0.186 1.186 13 H -0.206 1.206 14 H -0.203 1.203 15 C 0.308 3.692 16 O -0.479 6.479 17 C -0.005 4.005 18 C -0.139 4.139 19 C -0.106 4.106 20 C -0.104 4.104 21 C -0.103 4.103 22 C -0.136 4.136 23 C -0.057 4.057 24 Cl -0.046 7.046 25 C -0.088 4.088 26 C 0.002 3.998 27 N -0.104 5.104 28 H 0.075 0.925 29 H 0.112 0.888 30 H 0.075 0.925 31 H 0.121 0.879 32 H 0.169 0.831 33 H 0.084 0.916 34 H 0.163 0.837 35 H 0.157 0.843 36 H 0.152 0.848 37 H 0.150 0.850 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.495 8.322 -1.603 8.606 hybrid contribution -0.005 0.888 0.338 0.951 sum -1.500 9.210 -1.265 9.417 Atomic orbital electron populations 1.23099 0.78009 1.02675 1.02010 1.86542 1.22253 1.34644 1.84882 1.25232 0.93504 0.80909 0.71489 1.90589 1.67088 1.36415 1.45214 1.21178 0.84122 0.87591 1.07749 1.42984 1.53506 1.08385 1.06054 1.20283 1.26835 1.02693 0.92102 0.86106 1.25606 0.94613 0.95980 1.00510 1.69651 1.29484 1.16157 1.35640 0.85937 0.78558 0.79739 0.81096 1.18579 1.20583 1.20291 1.18005 0.81746 0.85425 0.84017 1.90643 1.57282 1.68819 1.31199 1.21462 0.95216 0.95260 0.88597 1.21836 0.98177 0.94256 0.99639 1.21263 0.97857 0.94607 0.96858 1.19032 1.01744 0.94895 0.94712 1.20863 0.98483 0.93345 0.97637 1.20663 1.01873 1.00124 0.90950 1.20469 1.04555 0.93270 0.87383 1.98362 1.92054 1.82036 1.32116 1.20786 0.97354 0.92507 0.98184 1.19068 0.97938 0.90832 0.91935 1.69242 1.07626 1.06952 1.26550 0.92507 0.88845 0.92452 0.87862 0.83146 0.91569 0.83683 0.84316 0.84752 0.84989 0.83606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.56 101.05 1.07 1.60 16 2 O -0.37 -6.95 10.56 -39.24 -0.41 -7.37 16 3 C 0.45 10.00 7.99 36.01 0.29 10.29 16 4 O -0.51 -12.53 16.06 -18.75 -0.30 -12.84 16 5 C 0.12 2.77 5.48 -5.19 -0.03 2.74 16 6 N -0.39 -9.93 2.02 -117.11 -0.24 -10.17 16 7 C -0.29 -7.33 7.55 -15.04 -0.11 -7.44 16 8 H 0.12 3.11 5.85 -52.49 -0.31 2.80 16 9 C 0.04 0.93 5.19 -17.44 -0.09 0.84 16 10 N -0.87 -21.89 11.25 55.51 0.62 -21.27 16 11 Si 0.92 19.56 29.56 -169.99 -5.02 14.54 16 12 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 13 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 14 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 15 C 0.52 12.93 7.43 -12.23 -0.09 12.83 16 16 O -0.59 -15.35 15.93 5.30 0.08 -15.26 16 17 C 0.15 3.24 6.67 -82.96 -0.55 2.69 16 18 C -0.12 -2.11 9.54 -39.43 -0.38 -2.49 16 19 C -0.08 -1.16 9.88 -39.26 -0.39 -1.55 16 20 C -0.10 -1.56 5.75 -106.70 -0.61 -2.17 16 21 C -0.08 -1.01 9.76 -39.52 -0.39 -1.40 16 22 C -0.12 -1.40 9.73 -39.85 -0.39 -1.79 16 23 C -0.03 -0.40 6.27 -39.85 -0.25 -0.65 16 24 Cl -0.07 -0.96 28.91 -51.86 -1.50 -2.46 16 25 C -0.07 -1.16 9.73 -39.38 -0.38 -1.54 16 26 C 0.13 2.33 6.61 -84.85 -0.56 1.77 16 27 N -0.39 -8.52 6.25 -7.56 -0.05 -8.57 16 28 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 29 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.06 0.83 8.13 -51.93 -0.42 0.40 16 31 H 0.10 2.35 7.52 -51.93 -0.39 1.96 16 32 H 0.15 3.58 5.66 -51.93 -0.29 3.28 16 33 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 34 H 0.15 2.43 7.61 -52.49 -0.40 2.03 16 35 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 36 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 37 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 38 H 0.15 2.54 8.06 -52.49 -0.42 2.12 16 LS Contribution 351.59 15.07 5.30 5.30 Total: -1.00 -30.27 351.59 -7.87 -38.14 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -3.48 Total: 6.23 kcal Atomic # 6 Polarization: 16.59 SS G_CDS: -2.87 Total: 13.72 kcal Atomic # 7 Polarization: -40.35 SS G_CDS: 0.34 Total: -40.01 kcal Atomic # 8 Polarization: -34.83 SS G_CDS: -0.63 Total: -35.46 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.54 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -1.50 Total: -2.46 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.27 -7.87 -38.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084112690.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.405 kcal (2) G-P(sol) polarization free energy of solvation -30.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds