Wall clock time and date at job start Wed Apr 1 2020 05:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34222 * 117.00059 * 2 1 4 4 O 1.20829 * 119.99993 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99968 * 180.02562 * 3 2 1 6 6 N 1.46505 * 109.47122 * 179.97438 * 5 3 2 7 7 C 1.36694 * 119.99961 * 95.16106 * 6 5 3 8 8 H 1.07998 * 120.00318 * 225.88536 * 7 6 5 9 9 C 1.39169 * 119.99775 * 45.61139 * 7 6 5 10 10 N 1.31283 * 120.00542 * 6.46891 * 9 7 6 11 11 Si 1.86804 * 120.00059 * 186.46998 * 9 7 6 12 12 H 1.48507 * 109.47024 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47277 * 119.99745 * 11 9 7 14 14 H 1.48499 * 109.46949 * 240.00194 * 11 9 7 15 15 C 1.34770 * 120.00034 * 275.16441 * 6 5 3 16 16 O 1.21571 * 120.00048 * 355.37784 * 15 6 5 17 17 C 1.48068 * 120.00198 * 175.37972 * 15 6 5 18 18 C 1.40362 * 119.25223 * 185.98408 * 17 15 6 19 19 C 1.36456 * 119.81444 * 179.69954 * 18 17 15 20 20 C 1.40789 * 118.26420 * 0.57789 * 19 18 17 21 21 C 1.40415 * 121.23851 * 179.66285 * 20 19 18 22 22 C 1.36124 * 119.67354 * 180.02562 * 21 20 19 23 23 C 1.39543 * 120.89027 * 0.02626 * 22 21 20 24 24 Cl 1.73606 * 119.46929 * 179.97438 * 23 22 21 25 25 C 1.36129 * 121.05627 * 359.92737 * 23 22 21 26 26 C 1.40777 * 119.72838 * 0.08899 * 25 23 22 27 27 N 1.31997 * 119.24731 * 6.25632 * 17 15 6 28 28 H 1.09001 * 109.47517 * 60.00368 * 1 2 3 29 29 H 1.09000 * 109.47395 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47575 * 300.00119 * 1 2 3 31 31 H 1.08997 * 109.47395 * 59.99907 * 5 3 2 32 32 H 1.08994 * 109.47059 * 299.99467 * 5 3 2 33 33 H 0.96998 * 120.00583 * 180.02562 * 10 9 7 34 34 H 1.08001 * 120.08924 * 0.02562 * 18 17 15 35 35 H 1.08002 * 120.86926 * 180.26927 * 19 18 17 36 36 H 1.08010 * 120.15935 * 0.02562 * 21 20 19 37 37 H 1.07999 * 119.55155 * 179.97438 * 22 21 20 38 38 H 1.07989 * 120.13910 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9817 2.6797 -0.0011 7 6 4.2780 3.3052 1.1777 8 1 3.8855 4.2908 1.3796 9 6 5.0809 2.6695 2.1200 10 7 5.6572 1.5267 1.8277 11 14 5.3387 3.4422 3.8011 12 1 4.5853 4.7196 3.8795 13 1 4.8499 2.5146 4.8526 14 1 6.7853 3.7067 4.0077 15 6 4.0716 3.3554 -1.1637 16 8 3.8900 2.7780 -2.2180 17 6 4.3916 4.8011 -1.1570 18 6 4.3571 5.5168 -2.3639 19 6 4.6440 6.8508 -2.3700 20 6 4.9807 7.4659 -1.1492 21 6 5.2939 8.8332 -1.0847 22 6 5.6155 9.3951 0.1127 23 6 5.6392 8.6304 1.2797 24 17 6.0551 9.3847 2.7869 25 6 5.3404 7.3025 1.2553 26 6 5.0032 6.6851 0.0359 27 7 4.7080 5.3863 -0.0169 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 3.9557 0.7808 -0.8908 32 1 3.9563 0.7806 0.8891 33 1 6.2166 1.0835 2.4846 34 1 4.0991 5.0141 -3.2843 35 1 4.6184 7.4190 -3.2882 36 1 5.2796 9.4360 -1.9808 37 1 5.8565 10.4468 0.1600 38 1 5.3628 6.7248 2.1674 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084112690.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:01 Heat of formation + Delta-G solvation = -60.227672 kcal Electronic energy + Delta-G solvation = -28000.654738 eV Core-core repulsion = 23834.687509 eV Total energy + Delta-G solvation = -4165.967229 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.071 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.03934 -41.48714 -40.21085 -38.35485 -37.53587 -36.99712 -36.78163 -34.50123 -33.56204 -31.81408 -31.03464 -30.21618 -27.99962 -27.03075 -25.58931 -24.56059 -23.20677 -22.57323 -21.41941 -19.99304 -19.02390 -18.75935 -18.51894 -17.91836 -17.42721 -17.08932 -16.82376 -16.57950 -16.12913 -15.92749 -15.69342 -15.40367 -15.09575 -14.93321 -14.42927 -14.33497 -14.31488 -14.14469 -13.65097 -13.40638 -13.31298 -13.07445 -12.93720 -12.83124 -12.64860 -12.56810 -12.09284 -12.05249 -12.01201 -11.80152 -11.60774 -11.43402 -11.18727 -11.01551 -10.14669 -9.73150 -9.41027 -9.29010 -8.34484 -6.09728 -0.76645 -0.42241 0.94664 0.99927 1.21271 1.30500 1.40886 1.42141 1.54052 1.73644 2.23341 2.38218 2.65591 3.02316 3.16243 3.35088 3.59763 3.80329 3.91571 3.99945 4.01886 4.06566 4.20340 4.28244 4.31004 4.37335 4.48731 4.63905 4.70893 4.84079 4.84665 4.86795 5.06103 5.12450 5.26443 5.30675 5.46871 5.60736 5.74092 5.79349 6.46808 6.75803 6.86412 7.08808 7.34044 7.76446 8.70876 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.011522 B = 0.004086 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2429.629387 B = 6851.624884 C = 8383.578693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.364 6.364 3 C 0.453 3.547 4 O -0.536 6.536 5 C 0.118 3.882 6 N -0.409 5.409 7 C -0.303 4.303 8 H 0.111 0.889 9 C 0.003 3.997 10 N -0.900 5.900 11 Si 0.972 3.028 12 H -0.261 1.261 13 H -0.273 1.273 14 H -0.276 1.276 15 C 0.506 3.494 16 O -0.616 6.616 17 C 0.115 3.885 18 C -0.141 4.141 19 C -0.045 4.045 20 C -0.107 4.107 21 C -0.063 4.063 22 C -0.109 4.109 23 C -0.015 4.015 24 Cl -0.062 7.062 25 C -0.102 4.102 26 C 0.098 3.902 27 N -0.426 5.426 28 H 0.056 0.944 29 H 0.140 0.860 30 H 0.058 0.942 31 H 0.100 0.900 32 H 0.144 0.856 33 H 0.276 0.724 34 H 0.149 0.851 35 H 0.196 0.804 36 H 0.188 0.812 37 H 0.173 0.827 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.267 12.458 -3.094 12.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.280 6.280 3 C 0.296 3.704 4 O -0.425 6.425 5 C -0.007 4.007 6 N -0.125 5.125 7 C -0.432 4.432 8 H 0.128 0.872 9 C -0.199 4.199 10 N -0.539 5.539 11 Si 0.796 3.204 12 H -0.185 1.185 13 H -0.198 1.198 14 H -0.201 1.201 15 C 0.296 3.704 16 O -0.504 6.504 17 C -0.037 4.037 18 C -0.162 4.162 19 C -0.070 4.070 20 C -0.109 4.109 21 C -0.081 4.081 22 C -0.127 4.127 23 C -0.044 4.044 24 Cl -0.033 7.033 25 C -0.122 4.122 26 C -0.026 4.026 27 N -0.137 5.137 28 H 0.075 0.925 29 H 0.158 0.842 30 H 0.076 0.924 31 H 0.118 0.882 32 H 0.161 0.839 33 H 0.086 0.914 34 H 0.167 0.833 35 H 0.213 0.787 36 H 0.205 0.795 37 H 0.190 0.810 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.403 11.915 -2.519 12.259 hybrid contribution -0.051 0.001 0.576 0.579 sum -1.454 11.916 -1.942 12.160 Atomic orbital electron populations 1.23540 0.75081 1.05778 1.02110 1.86506 1.24991 1.32468 1.84055 1.24926 0.93162 0.81418 0.70873 1.90561 1.67586 1.37559 1.46777 1.21087 0.85225 0.87285 1.07130 1.43136 1.54240 1.08861 1.06257 1.20215 1.27845 1.02567 0.92565 0.87227 1.26215 0.94247 0.96382 1.03022 1.69726 1.30468 1.17124 1.36583 0.85170 0.78311 0.79094 0.77828 1.18488 1.19848 1.20139 1.18693 0.80878 0.87161 0.83645 1.90576 1.58135 1.69909 1.31746 1.21279 0.97852 0.94068 0.90549 1.21880 1.00302 0.95900 0.98119 1.21826 0.93646 0.93075 0.98469 1.19379 1.01262 0.96502 0.93771 1.21391 0.95539 0.91606 0.99577 1.21157 1.00079 1.01731 0.89730 1.20712 1.02366 0.92419 0.88881 1.98373 1.91751 1.81441 1.31737 1.20693 1.00328 0.93891 0.97253 1.19345 0.99121 0.90134 0.93964 1.68947 1.08377 1.09278 1.27137 0.92486 0.84213 0.92362 0.88205 0.83872 0.91417 0.83344 0.78679 0.79491 0.80973 0.85704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 10.56 113.37 1.20 1.99 16 2 O -0.36 -14.04 10.56 -51.34 -0.54 -14.58 16 3 C 0.45 21.26 7.99 71.24 0.57 21.83 16 4 O -0.54 -27.76 16.06 21.95 0.35 -27.40 16 5 C 0.12 5.86 5.48 85.63 0.47 6.33 16 6 N -0.41 -22.04 2.02 -642.68 -1.30 -23.34 16 7 C -0.30 -16.33 7.55 84.16 0.64 -15.70 16 8 H 0.11 6.07 5.85 -2.91 -0.02 6.05 16 9 C 0.00 0.16 5.19 85.00 0.44 0.60 16 10 N -0.90 -47.60 11.25 21.70 0.24 -47.35 16 11 Si 0.97 41.86 29.56 68.60 2.03 43.89 16 12 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 13 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 14 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 15 C 0.51 26.85 7.43 86.85 0.65 27.49 16 16 O -0.62 -33.73 15.93 -3.94 -0.06 -33.79 16 17 C 0.11 5.28 6.67 42.25 0.28 5.56 16 18 C -0.14 -5.01 9.54 22.37 0.21 -4.79 16 19 C -0.04 -1.14 9.88 22.48 0.22 -0.92 16 20 C -0.11 -2.95 5.75 -21.21 -0.12 -3.07 16 21 C -0.06 -1.13 9.76 22.31 0.22 -0.91 16 22 C -0.11 -2.03 9.73 22.09 0.21 -1.81 16 23 C -0.02 -0.39 6.27 22.09 0.14 -0.25 16 24 Cl -0.06 -1.45 28.91 -2.72 -0.08 -1.53 16 25 C -0.10 -3.44 9.73 22.40 0.22 -3.22 16 26 C 0.10 3.63 6.61 40.46 0.27 3.90 16 27 N -0.43 -19.38 6.25 -177.83 -1.11 -20.49 16 28 H 0.06 1.63 8.13 -2.39 -0.02 1.61 16 29 H 0.14 2.66 8.14 -2.39 -0.02 2.64 16 30 H 0.06 1.66 8.13 -2.39 -0.02 1.64 16 31 H 0.10 4.90 7.52 -2.39 -0.02 4.88 16 32 H 0.14 7.29 5.66 -2.39 -0.01 7.28 16 33 H 0.28 13.66 8.31 -92.71 -0.77 12.89 16 34 H 0.15 5.01 7.61 -2.91 -0.02 4.99 16 35 H 0.20 2.71 8.06 -2.91 -0.02 2.69 16 36 H 0.19 1.53 8.06 -2.91 -0.02 1.51 16 37 H 0.17 1.94 8.06 -2.91 -0.02 1.92 16 38 H 0.12 4.60 8.06 -2.92 -0.02 4.58 16 Total: -1.00 -73.08 351.59 6.27 -66.81 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: 1.13 Total: 20.78 kcal Atomic # 6 Polarization: 31.41 SS G_CDS: 5.61 Total: 37.02 kcal Atomic # 7 Polarization: -89.02 SS G_CDS: -2.16 Total: -91.19 kcal Atomic # 8 Polarization: -75.52 SS G_CDS: -0.25 Total: -75.77 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Atomic # 17 Polarization: -1.45 SS G_CDS: -0.08 Total: -1.53 kcal Total: -73.08 6.27 -66.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084112690.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.579 kcal (2) G-P(sol) polarization free energy of solvation -73.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds