Wall clock time and date at job start Wed Apr 1 2020 05:12:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31554 * 1
3 3 Si 1.86802 * 120.00089 * 2 1
4 4 H 1.48496 * 109.47118 * 270.00074 * 3 2 1
5 5 H 1.48501 * 109.46834 * 30.00299 * 3 2 1
6 6 H 1.48502 * 109.47190 * 149.99949 * 3 2 1
7 7 C 1.38661 * 120.00112 * 179.97438 * 2 1 3
8 8 H 1.07999 * 120.00004 * 179.97438 * 7 2 1
9 9 O 1.34826 * 119.99844 * 0.02562 * 7 2 1
10 10 C 1.35752 * 116.99781 * 185.05464 * 9 7 2
11 11 C 1.38897 * 120.06905 * 354.48231 * 10 9 7
12 12 C 1.38083 * 119.93167 * 179.97438 * 11 10 9
13 13 C 1.38328 * 120.06732 * 359.74748 * 12 11 10
14 14 C 1.38280 * 120.13301 * 0.51403 * 13 12 11
15 15 C 1.50710 * 119.95801 * 179.76695 * 14 13 12
16 16 C 1.50703 * 109.46788 * 269.71637 * 15 14 13
17 17 O 1.21281 * 119.99647 * 0.02562 * 16 15 14
18 18 N 1.34771 * 119.99978 * 180.02562 * 16 15 14
19 19 N 1.40095 * 120.00259 * 180.02562 * 18 16 15
20 20 C 1.39112 * 120.00069 * 180.02562 * 19 18 16
21 21 C 1.39505 * 120.13978 * 180.02562 * 20 19 18
22 22 C 1.38524 * 117.90981 * 179.97438 * 21 20 19
23 23 C 1.38959 * 118.02893 * 0.02562 * 22 21 20
24 24 Cl 1.73597 * 120.01008 * 179.97438 * 23 22 21
25 25 N 1.31869 * 119.98140 * 359.97438 * 23 22 21
26 26 N 1.28350 * 122.27050 * 0.02562 * 25 23 22
27 27 C 1.38119 * 120.07314 * 359.48435 * 14 13 12
28 28 H 0.96998 * 120.00069 * 359.97438 * 1 2 3
29 29 H 1.08006 * 120.03802 * 359.96077 * 11 10 9
30 30 H 1.07998 * 119.96699 * 180.02562 * 12 11 10
31 31 H 1.07998 * 119.92757 * 180.27637 * 13 12 11
32 32 H 1.08999 * 109.46598 * 149.72574 * 15 14 13
33 33 H 1.08991 * 109.47046 * 29.71980 * 15 14 13
34 34 H 0.97007 * 119.99504 * 0.02562 * 18 16 15
35 35 H 0.96998 * 119.99933 * 359.97438 * 19 18 16
36 36 H 1.07996 * 121.04254 * 0.24294 * 21 20 19
37 37 H 1.08003 * 120.98814 * 180.02562 * 22 21 20
38 38 H 1.07996 * 120.03369 * 180.23744 * 27 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3155 0.0000 0.0000
3 14 2.2496 1.6177 0.0000
4 1 2.4971 2.0464 -1.4000
5 1 1.4470 2.6526 0.7001
6 1 3.5471 1.4402 0.7001
7 6 2.0089 -1.2008 0.0005
8 1 3.0889 -1.2008 0.0001
9 8 1.3347 -2.3684 0.0005
10 6 2.0700 -3.5046 0.1076
11 6 3.4574 -3.4394 0.0955
12 6 4.2025 -4.5967 0.2052
13 6 3.5687 -5.8196 0.3323
14 6 2.1876 -5.8883 0.3392
15 6 1.5011 -7.2233 0.4726
16 6 1.2659 -7.8062 -0.8970
17 8 1.6213 -7.1978 -1.8842
18 7 0.6608 -9.0036 -1.0250
19 7 0.4426 -9.5459 -2.2982
20 6 -0.1825 -10.7816 -2.4302
21 6 -0.4007 -11.3245 -3.6966
22 6 -1.0265 -12.5578 -3.7743
23 6 -1.3984 -13.1773 -2.5873
24 17 -2.1866 -14.7236 -2.6248
25 7 -1.1525 -12.5903 -1.4324
26 7 -0.5730 -11.4477 -1.3541
27 6 1.4367 -4.7342 0.2300
28 1 -0.4850 0.8400 0.0004
29 1 3.9530 -2.4845 0.0002
30 1 5.2813 -4.5467 0.1963
31 1 4.1537 -6.7230 0.4224
32 1 0.5455 -7.0913 0.9802
33 1 2.1301 -7.8990 1.0520
34 1 0.3763 -9.4901 -0.2353
35 1 0.7268 -9.0593 -3.0877
36 1 -0.0875 -10.8016 -4.5882
37 1 -1.2196 -13.0242 -4.7291
38 1 0.3581 -4.7882 0.2393
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000089829890.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:12:21
Heat of formation + Delta-G solvation = 59.861255 kcal
Electronic energy + Delta-G solvation = -25606.587317 eV
Core-core repulsion = 21478.120286 eV
Total energy + Delta-G solvation = -4128.467031 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 348.078 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-41.55278 -40.06546 -38.88695 -37.37299 -36.82002 -36.23437 -33.89755 -33.01053
-32.37886 -31.99632 -29.86102 -29.12974 -27.01162 -25.36904 -25.18029 -24.12291
-21.93054 -21.54886 -20.59025 -19.21441 -18.35033 -17.68948 -17.59507 -17.11183
-16.86663 -16.24912 -16.06936 -15.51574 -15.01367 -14.62570 -14.48325 -14.39568
-14.14362 -14.07474 -13.58866 -13.49591 -13.25297 -12.67890 -12.46617 -12.12247
-12.11800 -11.88516 -11.82586 -11.56949 -11.29186 -10.85882 -10.85483 -10.82018
-10.64447 -10.44764 -10.23920 -10.12234 -10.09303 -9.34413 -8.83485 -8.11562
-8.10731 -7.23228 -6.43726 -4.02862 0.20457 0.42839 1.18700 1.45494
2.14853 2.38328 2.46765 2.98834 3.13266 3.14080 3.18947 3.26584
3.84404 3.97160 4.07219 4.09444 4.30553 4.50137 4.74297 4.91703
5.02462 5.08594 5.14649 5.15566 5.32996 5.43565 5.60901 5.72306
5.90977 6.13877 6.17163 6.32118 6.63120 6.80905 6.89727 7.06542
7.21183 7.22858 7.35658 7.43286 7.80562 8.00971 8.01792 8.19572
9.01950 9.72212 10.74408
Molecular weight = 348.08amu
Principal moments of inertia in cm(-1)
A = 0.025164 B = 0.001625 C = 0.001576
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1112.452656 B =17231.627545 C =17766.202083
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.863 5.863
2 C 0.039 3.961
3 Si 0.941 3.059
4 H -0.274 1.274
5 H -0.278 1.278
6 H -0.267 1.267
7 C -0.391 4.391
8 H 0.092 0.908
9 O -0.179 6.179
10 C 0.154 3.846
11 C -0.228 4.228
12 C -0.075 4.075
13 C -0.195 4.195
14 C -0.037 4.037
15 C -0.080 4.080
16 C 0.516 3.484
17 O -0.518 6.518
18 N -0.527 5.527
19 N -0.498 5.498
20 C 0.347 3.653
21 C -0.159 4.159
22 C -0.056 4.056
23 C 0.056 3.944
24 Cl -0.014 7.014
25 N -0.180 5.180
26 N -0.293 5.293
27 C -0.173 4.173
28 H 0.269 0.731
29 H 0.127 0.873
30 H 0.108 0.892
31 H 0.104 0.896
32 H 0.108 0.892
33 H 0.106 0.894
34 H 0.433 0.567
35 H 0.446 0.554
36 H 0.161 0.839
37 H 0.163 0.837
38 H 0.115 0.885
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.467 -25.539 -5.668 26.164
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.498 5.498
2 C -0.165 4.165
3 Si 0.766 3.234
4 H -0.199 1.199
5 H -0.203 1.203
6 H -0.192 1.192
7 C -0.468 4.468
8 H 0.109 0.891
9 O -0.082 6.082
10 C 0.100 3.900
11 C -0.247 4.247
12 C -0.093 4.093
13 C -0.214 4.214
14 C -0.038 4.038
15 C -0.121 4.121
16 C 0.303 3.697
17 O -0.390 6.390
18 N -0.277 5.277
19 N -0.226 5.226
20 C 0.104 3.896
21 C -0.193 4.193
22 C -0.085 4.085
23 C -0.121 4.121
24 Cl 0.014 6.986
25 N -0.023 5.023
26 N -0.148 5.148
27 C -0.192 4.192
28 H 0.079 0.921
29 H 0.144 0.856
30 H 0.126 0.874
31 H 0.122 0.878
32 H 0.126 0.874
33 H 0.124 0.876
34 H 0.275 0.725
35 H 0.292 0.708
36 H 0.179 0.821
37 H 0.180 0.820
38 H 0.133 0.867
Dipole moment (debyes) X Y Z Total
from point charges -0.743 -24.888 -4.597 25.320
hybrid contribution 0.482 0.661 -1.630 1.823
sum -0.261 -24.227 -6.227 25.016
Atomic orbital electron populations
1.70037 1.05944 1.27610 1.46256 1.25282 0.95840 0.98798 0.96607
0.85716 0.78916 0.80123 0.78692 1.19920 1.20270 1.19198 1.21319
0.91787 0.80826 1.52845 0.89095 1.83977 1.34245 1.11391 1.78627
1.19271 0.90253 0.87991 0.92463 1.21199 0.93838 0.99023 1.10661
1.20688 0.98437 0.92296 0.97896 1.20358 0.93216 0.97018 1.10812
1.18570 0.93222 0.91379 1.00589 1.20501 1.03386 0.95966 0.92279
1.21247 0.76784 0.78503 0.93200 1.90789 1.49522 1.59083 1.39565
1.45213 1.63299 1.20706 0.98449 1.43080 1.62662 1.16171 1.00684
1.19969 0.90738 0.86660 0.92233 1.21674 1.03389 0.96966 0.97306
1.21967 0.93851 0.93472 0.99225 1.23111 1.03642 0.92977 0.92408
1.98414 1.77978 1.23798 1.98412 1.72611 1.05260 1.01436 1.23018
1.73035 1.14885 1.02640 1.24227 1.19950 0.99114 0.89974 1.10157
0.92064 0.85563 0.87401 0.87816 0.87419 0.87561 0.72489 0.70821
0.82109 0.81959 0.86712
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.86 -25.44 13.67 55.48 0.76 -24.69 16
2 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16
3 Si 0.94 20.61 29.55 -169.99 -5.02 15.59 16
4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16
5 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16
6 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16
7 C -0.39 -11.02 9.49 30.89 0.29 -10.73 16
8 H 0.09 2.37 5.20 -52.49 -0.27 2.09 16
9 O -0.18 -5.15 9.76 0.05 0.00 -5.15 16
10 C 0.15 3.76 6.65 -39.11 -0.26 3.50 16
11 C -0.23 -5.02 9.17 -39.39 -0.36 -5.38 16
12 C -0.07 -1.39 10.04 -39.60 -0.40 -1.79 16
13 C -0.19 -3.35 9.70 -39.53 -0.38 -3.74 16
14 C -0.04 -0.64 4.37 -104.65 -0.46 -1.09 16
15 C -0.08 -0.96 5.83 -29.03 -0.17 -1.13 16
16 C 0.52 6.73 7.94 -10.99 -0.09 6.65 16
17 O -0.52 -8.99 15.87 5.56 0.09 -8.90 16
18 N -0.53 -5.38 6.29 31.22 0.20 -5.18 16
19 N -0.50 -4.68 6.43 31.23 0.20 -4.48 16
20 C 0.35 3.07 7.68 -154.74 -1.19 1.88 16
21 C -0.16 -0.94 10.06 -39.00 -0.39 -1.33 16
22 C -0.06 -0.32 9.99 -39.21 -0.39 -0.71 16
23 C 0.06 0.46 7.37 -17.27 -0.13 0.34 16
24 Cl -0.01 -0.10 29.13 -51.86 -1.51 -1.61 16
25 N -0.18 -1.94 11.48 32.90 0.38 -1.57 16
26 N -0.29 -3.14 10.55 31.24 0.33 -2.81 16
27 C -0.17 -3.64 9.65 -39.40 -0.38 -4.02 16
28 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16
29 H 0.13 2.77 5.64 -52.48 -0.30 2.48 16
30 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16
31 H 0.10 1.48 8.06 -52.49 -0.42 1.06 16
32 H 0.11 1.08 8.08 -51.93 -0.42 0.66 16
33 H 0.11 0.93 8.08 -51.93 -0.42 0.52 16
34 H 0.43 3.68 7.98 -182.60 -1.46 2.23 16
35 H 0.45 3.90 8.01 -182.60 -1.46 2.43 16
36 H 0.16 0.45 8.06 -52.49 -0.42 0.03 16
37 H 0.16 0.38 8.06 -52.48 -0.42 -0.04 16
38 H 0.11 2.34 8.06 -52.49 -0.42 1.92 16
LS Contribution 359.07 15.07 5.41 5.41
Total: -1.00 -35.46 359.07 -9.15 -44.61
By element:
Atomic # 1 Polarization: 10.93 SS G_CDS: -5.58 Total: 5.35 kcal
Atomic # 6 Polarization: -12.18 SS G_CDS: -4.40 Total: -16.58 kcal
Atomic # 7 Polarization: -40.58 SS G_CDS: 1.86 Total: -38.72 kcal
Atomic # 8 Polarization: -14.14 SS G_CDS: 0.09 Total: -14.05 kcal
Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal
Atomic # 17 Polarization: -0.10 SS G_CDS: -1.51 Total: -1.61 kcal
Total LS contribution 5.41 Total: 5.41 kcal
Total: -35.46 -9.15 -44.61 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000089829890.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 104.468 kcal
(2) G-P(sol) polarization free energy of solvation -35.459 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.009 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.148 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.607 kcal
(6) G-S(sol) free energy of system = (1) + (5) 59.861 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.60 seconds