Wall clock time and date at job start Wed Apr 1 2020 05:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86802 * 120.00089 * 2 1 4 4 H 1.48496 * 109.47118 * 270.00074 * 3 2 1 5 5 H 1.48501 * 109.46834 * 30.00299 * 3 2 1 6 6 H 1.48502 * 109.47190 * 149.99949 * 3 2 1 7 7 C 1.38661 * 120.00112 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00004 * 179.97438 * 7 2 1 9 9 O 1.34826 * 119.99844 * 0.02562 * 7 2 1 10 10 C 1.35752 * 116.99781 * 185.05464 * 9 7 2 11 11 C 1.38897 * 120.06905 * 354.48231 * 10 9 7 12 12 C 1.38083 * 119.93167 * 179.97438 * 11 10 9 13 13 C 1.38328 * 120.06732 * 359.74748 * 12 11 10 14 14 C 1.38280 * 120.13301 * 0.51403 * 13 12 11 15 15 C 1.50710 * 119.95801 * 179.76695 * 14 13 12 16 16 C 1.50703 * 109.46788 * 269.71637 * 15 14 13 17 17 O 1.21281 * 119.99647 * 0.02562 * 16 15 14 18 18 N 1.34771 * 119.99978 * 180.02562 * 16 15 14 19 19 N 1.40095 * 120.00259 * 180.02562 * 18 16 15 20 20 C 1.39112 * 120.00069 * 180.02562 * 19 18 16 21 21 C 1.39505 * 120.13978 * 180.02562 * 20 19 18 22 22 C 1.38524 * 117.90981 * 179.97438 * 21 20 19 23 23 C 1.38959 * 118.02893 * 0.02562 * 22 21 20 24 24 Cl 1.73597 * 120.01008 * 179.97438 * 23 22 21 25 25 N 1.31869 * 119.98140 * 359.97438 * 23 22 21 26 26 N 1.28350 * 122.27050 * 0.02562 * 25 23 22 27 27 C 1.38119 * 120.07314 * 359.48435 * 14 13 12 28 28 H 0.96998 * 120.00069 * 359.97438 * 1 2 3 29 29 H 1.08006 * 120.03802 * 359.96077 * 11 10 9 30 30 H 1.07998 * 119.96699 * 180.02562 * 12 11 10 31 31 H 1.07998 * 119.92757 * 180.27637 * 13 12 11 32 32 H 1.08999 * 109.46598 * 149.72574 * 15 14 13 33 33 H 1.08991 * 109.47046 * 29.71980 * 15 14 13 34 34 H 0.97007 * 119.99504 * 0.02562 * 18 16 15 35 35 H 0.96998 * 119.99933 * 359.97438 * 19 18 16 36 36 H 1.07996 * 121.04254 * 0.24294 * 21 20 19 37 37 H 1.08003 * 120.98814 * 180.02562 * 22 21 20 38 38 H 1.07996 * 120.03369 * 180.23744 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4000 5 1 1.4470 2.6526 0.7001 6 1 3.5471 1.4402 0.7001 7 6 2.0089 -1.2008 0.0005 8 1 3.0889 -1.2008 0.0001 9 8 1.3347 -2.3684 0.0005 10 6 2.0700 -3.5046 0.1076 11 6 3.4574 -3.4394 0.0955 12 6 4.2025 -4.5967 0.2052 13 6 3.5687 -5.8196 0.3323 14 6 2.1876 -5.8883 0.3392 15 6 1.5011 -7.2233 0.4726 16 6 1.2659 -7.8062 -0.8970 17 8 1.6213 -7.1978 -1.8842 18 7 0.6608 -9.0036 -1.0250 19 7 0.4426 -9.5459 -2.2982 20 6 -0.1825 -10.7816 -2.4302 21 6 -0.4007 -11.3245 -3.6966 22 6 -1.0265 -12.5578 -3.7743 23 6 -1.3984 -13.1773 -2.5873 24 17 -2.1866 -14.7236 -2.6248 25 7 -1.1525 -12.5903 -1.4324 26 7 -0.5730 -11.4477 -1.3541 27 6 1.4367 -4.7342 0.2300 28 1 -0.4850 0.8400 0.0004 29 1 3.9530 -2.4845 0.0002 30 1 5.2813 -4.5467 0.1963 31 1 4.1537 -6.7230 0.4224 32 1 0.5455 -7.0913 0.9802 33 1 2.1301 -7.8990 1.0520 34 1 0.3763 -9.4901 -0.2353 35 1 0.7268 -9.0593 -3.0877 36 1 -0.0875 -10.8016 -4.5882 37 1 -1.2196 -13.0242 -4.7291 38 1 0.3581 -4.7882 0.2393 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089829890.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:21 Heat of formation + Delta-G solvation = 59.861255 kcal Electronic energy + Delta-G solvation = -25606.587317 eV Core-core repulsion = 21478.120286 eV Total energy + Delta-G solvation = -4128.467031 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.078 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.55278 -40.06546 -38.88695 -37.37299 -36.82002 -36.23437 -33.89755 -33.01053 -32.37886 -31.99632 -29.86102 -29.12974 -27.01162 -25.36904 -25.18029 -24.12291 -21.93054 -21.54886 -20.59025 -19.21441 -18.35033 -17.68948 -17.59507 -17.11183 -16.86663 -16.24912 -16.06936 -15.51574 -15.01367 -14.62570 -14.48325 -14.39568 -14.14362 -14.07474 -13.58866 -13.49591 -13.25297 -12.67890 -12.46617 -12.12247 -12.11800 -11.88516 -11.82586 -11.56949 -11.29186 -10.85882 -10.85483 -10.82018 -10.64447 -10.44764 -10.23920 -10.12234 -10.09303 -9.34413 -8.83485 -8.11562 -8.10731 -7.23228 -6.43726 -4.02862 0.20457 0.42839 1.18700 1.45494 2.14853 2.38328 2.46765 2.98834 3.13266 3.14080 3.18947 3.26584 3.84404 3.97160 4.07219 4.09444 4.30553 4.50137 4.74297 4.91703 5.02462 5.08594 5.14649 5.15566 5.32996 5.43565 5.60901 5.72306 5.90977 6.13877 6.17163 6.32118 6.63120 6.80905 6.89727 7.06542 7.21183 7.22858 7.35658 7.43286 7.80562 8.00971 8.01792 8.19572 9.01950 9.72212 10.74408 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.025164 B = 0.001625 C = 0.001576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.452656 B =17231.627545 C =17766.202083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.391 4.391 8 H 0.092 0.908 9 O -0.179 6.179 10 C 0.154 3.846 11 C -0.228 4.228 12 C -0.075 4.075 13 C -0.195 4.195 14 C -0.037 4.037 15 C -0.080 4.080 16 C 0.516 3.484 17 O -0.518 6.518 18 N -0.527 5.527 19 N -0.498 5.498 20 C 0.347 3.653 21 C -0.159 4.159 22 C -0.056 4.056 23 C 0.056 3.944 24 Cl -0.014 7.014 25 N -0.180 5.180 26 N -0.293 5.293 27 C -0.173 4.173 28 H 0.269 0.731 29 H 0.127 0.873 30 H 0.108 0.892 31 H 0.104 0.896 32 H 0.108 0.892 33 H 0.106 0.894 34 H 0.433 0.567 35 H 0.446 0.554 36 H 0.161 0.839 37 H 0.163 0.837 38 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.467 -25.539 -5.668 26.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.468 4.468 8 H 0.109 0.891 9 O -0.082 6.082 10 C 0.100 3.900 11 C -0.247 4.247 12 C -0.093 4.093 13 C -0.214 4.214 14 C -0.038 4.038 15 C -0.121 4.121 16 C 0.303 3.697 17 O -0.390 6.390 18 N -0.277 5.277 19 N -0.226 5.226 20 C 0.104 3.896 21 C -0.193 4.193 22 C -0.085 4.085 23 C -0.121 4.121 24 Cl 0.014 6.986 25 N -0.023 5.023 26 N -0.148 5.148 27 C -0.192 4.192 28 H 0.079 0.921 29 H 0.144 0.856 30 H 0.126 0.874 31 H 0.122 0.878 32 H 0.126 0.874 33 H 0.124 0.876 34 H 0.275 0.725 35 H 0.292 0.708 36 H 0.179 0.821 37 H 0.180 0.820 38 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.743 -24.888 -4.597 25.320 hybrid contribution 0.482 0.661 -1.630 1.823 sum -0.261 -24.227 -6.227 25.016 Atomic orbital electron populations 1.70037 1.05944 1.27610 1.46256 1.25282 0.95840 0.98798 0.96607 0.85716 0.78916 0.80123 0.78692 1.19920 1.20270 1.19198 1.21319 0.91787 0.80826 1.52845 0.89095 1.83977 1.34245 1.11391 1.78627 1.19271 0.90253 0.87991 0.92463 1.21199 0.93838 0.99023 1.10661 1.20688 0.98437 0.92296 0.97896 1.20358 0.93216 0.97018 1.10812 1.18570 0.93222 0.91379 1.00589 1.20501 1.03386 0.95966 0.92279 1.21247 0.76784 0.78503 0.93200 1.90789 1.49522 1.59083 1.39565 1.45213 1.63299 1.20706 0.98449 1.43080 1.62662 1.16171 1.00684 1.19969 0.90738 0.86660 0.92233 1.21674 1.03389 0.96966 0.97306 1.21967 0.93851 0.93472 0.99225 1.23111 1.03642 0.92977 0.92408 1.98414 1.77978 1.23798 1.98412 1.72611 1.05260 1.01436 1.23018 1.73035 1.14885 1.02640 1.24227 1.19950 0.99114 0.89974 1.10157 0.92064 0.85563 0.87401 0.87816 0.87419 0.87561 0.72489 0.70821 0.82109 0.81959 0.86712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.44 13.67 55.48 0.76 -24.69 16 2 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 20.61 29.55 -169.99 -5.02 15.59 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 6 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 7 C -0.39 -11.02 9.49 30.89 0.29 -10.73 16 8 H 0.09 2.37 5.20 -52.49 -0.27 2.09 16 9 O -0.18 -5.15 9.76 0.05 0.00 -5.15 16 10 C 0.15 3.76 6.65 -39.11 -0.26 3.50 16 11 C -0.23 -5.02 9.17 -39.39 -0.36 -5.38 16 12 C -0.07 -1.39 10.04 -39.60 -0.40 -1.79 16 13 C -0.19 -3.35 9.70 -39.53 -0.38 -3.74 16 14 C -0.04 -0.64 4.37 -104.65 -0.46 -1.09 16 15 C -0.08 -0.96 5.83 -29.03 -0.17 -1.13 16 16 C 0.52 6.73 7.94 -10.99 -0.09 6.65 16 17 O -0.52 -8.99 15.87 5.56 0.09 -8.90 16 18 N -0.53 -5.38 6.29 31.22 0.20 -5.18 16 19 N -0.50 -4.68 6.43 31.23 0.20 -4.48 16 20 C 0.35 3.07 7.68 -154.74 -1.19 1.88 16 21 C -0.16 -0.94 10.06 -39.00 -0.39 -1.33 16 22 C -0.06 -0.32 9.99 -39.21 -0.39 -0.71 16 23 C 0.06 0.46 7.37 -17.27 -0.13 0.34 16 24 Cl -0.01 -0.10 29.13 -51.86 -1.51 -1.61 16 25 N -0.18 -1.94 11.48 32.90 0.38 -1.57 16 26 N -0.29 -3.14 10.55 31.24 0.33 -2.81 16 27 C -0.17 -3.64 9.65 -39.40 -0.38 -4.02 16 28 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 29 H 0.13 2.77 5.64 -52.48 -0.30 2.48 16 30 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 31 H 0.10 1.48 8.06 -52.49 -0.42 1.06 16 32 H 0.11 1.08 8.08 -51.93 -0.42 0.66 16 33 H 0.11 0.93 8.08 -51.93 -0.42 0.52 16 34 H 0.43 3.68 7.98 -182.60 -1.46 2.23 16 35 H 0.45 3.90 8.01 -182.60 -1.46 2.43 16 36 H 0.16 0.45 8.06 -52.49 -0.42 0.03 16 37 H 0.16 0.38 8.06 -52.48 -0.42 -0.04 16 38 H 0.11 2.34 8.06 -52.49 -0.42 1.92 16 LS Contribution 359.07 15.07 5.41 5.41 Total: -1.00 -35.46 359.07 -9.15 -44.61 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -5.58 Total: 5.35 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: -4.40 Total: -16.58 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: 1.86 Total: -38.72 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: 0.09 Total: -14.05 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 17 Polarization: -0.10 SS G_CDS: -1.51 Total: -1.61 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.46 -9.15 -44.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089829890.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.468 kcal (2) G-P(sol) polarization free energy of solvation -35.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds