Wall clock time and date at job start Wed Apr 1 2020 05:12:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31554 * 1
3 3 Si 1.86802 * 120.00089 * 2 1
4 4 H 1.48496 * 109.47118 * 270.00074 * 3 2 1
5 5 H 1.48501 * 109.46834 * 30.00299 * 3 2 1
6 6 H 1.48502 * 109.47190 * 149.99949 * 3 2 1
7 7 C 1.38661 * 120.00112 * 179.97438 * 2 1 3
8 8 H 1.07999 * 120.00004 * 179.97438 * 7 2 1
9 9 O 1.34826 * 119.99844 * 0.02562 * 7 2 1
10 10 C 1.35752 * 116.99781 * 185.05464 * 9 7 2
11 11 C 1.38897 * 120.06905 * 354.48231 * 10 9 7
12 12 C 1.38083 * 119.93167 * 179.97438 * 11 10 9
13 13 C 1.38328 * 120.06732 * 359.74748 * 12 11 10
14 14 C 1.38280 * 120.13301 * 0.51403 * 13 12 11
15 15 C 1.50710 * 119.95801 * 179.76695 * 14 13 12
16 16 C 1.50703 * 109.46788 * 269.71637 * 15 14 13
17 17 O 1.21281 * 119.99647 * 0.02562 * 16 15 14
18 18 N 1.34771 * 119.99978 * 180.02562 * 16 15 14
19 19 N 1.40095 * 120.00259 * 180.02562 * 18 16 15
20 20 C 1.39112 * 120.00069 * 180.02562 * 19 18 16
21 21 C 1.39505 * 120.13978 * 180.02562 * 20 19 18
22 22 C 1.38524 * 117.90981 * 179.97438 * 21 20 19
23 23 C 1.38959 * 118.02893 * 0.02562 * 22 21 20
24 24 Cl 1.73597 * 120.01008 * 179.97438 * 23 22 21
25 25 N 1.31869 * 119.98140 * 359.97438 * 23 22 21
26 26 N 1.28350 * 122.27050 * 0.02562 * 25 23 22
27 27 C 1.38119 * 120.07314 * 359.48435 * 14 13 12
28 28 H 0.96998 * 120.00069 * 359.97438 * 1 2 3
29 29 H 1.08006 * 120.03802 * 359.96077 * 11 10 9
30 30 H 1.07998 * 119.96699 * 180.02562 * 12 11 10
31 31 H 1.07998 * 119.92757 * 180.27637 * 13 12 11
32 32 H 1.08999 * 109.46598 * 149.72574 * 15 14 13
33 33 H 1.08991 * 109.47046 * 29.71980 * 15 14 13
34 34 H 0.97007 * 119.99504 * 0.02562 * 18 16 15
35 35 H 0.96998 * 119.99933 * 359.97438 * 19 18 16
36 36 H 1.07996 * 121.04254 * 0.24294 * 21 20 19
37 37 H 1.08003 * 120.98814 * 180.02562 * 22 21 20
38 38 H 1.07996 * 120.03369 * 180.23744 * 27 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3155 0.0000 0.0000
3 14 2.2496 1.6177 0.0000
4 1 2.4971 2.0464 -1.4000
5 1 1.4470 2.6526 0.7001
6 1 3.5471 1.4402 0.7001
7 6 2.0089 -1.2008 0.0005
8 1 3.0889 -1.2008 0.0001
9 8 1.3347 -2.3684 0.0005
10 6 2.0700 -3.5046 0.1076
11 6 3.4574 -3.4394 0.0955
12 6 4.2025 -4.5967 0.2052
13 6 3.5687 -5.8196 0.3323
14 6 2.1876 -5.8883 0.3392
15 6 1.5011 -7.2233 0.4726
16 6 1.2659 -7.8062 -0.8970
17 8 1.6213 -7.1978 -1.8842
18 7 0.6608 -9.0036 -1.0250
19 7 0.4426 -9.5459 -2.2982
20 6 -0.1825 -10.7816 -2.4302
21 6 -0.4007 -11.3245 -3.6966
22 6 -1.0265 -12.5578 -3.7743
23 6 -1.3984 -13.1773 -2.5873
24 17 -2.1866 -14.7236 -2.6248
25 7 -1.1525 -12.5903 -1.4324
26 7 -0.5730 -11.4477 -1.3541
27 6 1.4367 -4.7342 0.2300
28 1 -0.4850 0.8400 0.0004
29 1 3.9530 -2.4845 0.0002
30 1 5.2813 -4.5467 0.1963
31 1 4.1537 -6.7230 0.4224
32 1 0.5455 -7.0913 0.9802
33 1 2.1301 -7.8990 1.0520
34 1 0.3763 -9.4901 -0.2353
35 1 0.7268 -9.0593 -3.0877
36 1 -0.0875 -10.8016 -4.5882
37 1 -1.2196 -13.0242 -4.7291
38 1 0.3581 -4.7882 0.2393
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000089829890.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:12:20
Heat of formation + Delta-G solvation = 34.927248 kcal
Electronic energy + Delta-G solvation = -25607.668536 eV
Core-core repulsion = 21478.120286 eV
Total energy + Delta-G solvation = -4129.548251 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 348.078 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-42.19375 -41.19999 -40.46504 -38.37897 -37.90708 -37.27074 -34.55563 -34.33761
-33.84565 -33.22703 -31.00871 -30.48680 -28.27568 -27.22299 -25.90068 -24.79687
-23.33165 -22.97779 -21.89220 -20.07088 -19.41593 -19.12498 -18.70204 -18.18981
-17.82826 -17.08588 -16.94741 -16.69826 -16.49735 -16.11981 -15.94624 -15.53398
-15.21343 -15.11085 -14.89374 -14.54400 -14.36071 -14.04230 -13.99229 -13.59101
-12.97986 -12.93638 -12.78356 -12.65065 -12.48658 -12.46532 -12.40158 -12.21816
-12.10425 -11.40314 -11.28948 -11.19376 -10.85817 -10.80231 -10.76527 -9.65313
-8.97504 -8.87422 -8.46621 -6.15032 -0.32236 -0.17855 0.36937 0.62847
0.75620 0.90840 1.34448 1.44137 1.48507 1.52252 2.17900 2.36591
2.53255 2.83821 3.14889 3.29245 3.42711 3.49105 3.63637 3.72094
3.83787 4.03303 4.11644 4.32675 4.42167 4.43797 4.58255 4.64108
4.69213 4.75361 4.83338 5.06271 5.13511 5.30649 5.43977 5.65423
5.73222 5.75622 6.00247 6.03461 6.24169 6.43544 6.98088 7.13242
7.52272 7.79768 8.76816
Molecular weight = 348.08amu
Principal moments of inertia in cm(-1)
A = 0.025164 B = 0.001625 C = 0.001576
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1112.452656 B =17231.627545 C =17766.202083
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.922 5.922
2 C -0.024 4.024
3 Si 1.019 2.981
4 H -0.264 1.264
5 H -0.270 1.270
6 H -0.252 1.252
7 C -0.414 4.414
8 H 0.101 0.899
9 O -0.235 6.235
10 C 0.110 3.890
11 C -0.244 4.244
12 C -0.075 4.075
13 C -0.177 4.177
14 C -0.027 4.027
15 C -0.079 4.079
16 C 0.520 3.480
17 O -0.568 6.568
18 N -0.513 5.513
19 N -0.503 5.503
20 C 0.335 3.665
21 C -0.145 4.145
22 C -0.049 4.049
23 C 0.052 3.948
24 Cl -0.008 7.008
25 N -0.218 5.218
26 N -0.319 5.319
27 C -0.189 4.189
28 H 0.272 0.728
29 H 0.117 0.883
30 H 0.145 0.855
31 H 0.150 0.850
32 H 0.129 0.871
33 H 0.152 0.848
34 H 0.442 0.558
35 H 0.448 0.552
36 H 0.196 0.804
37 H 0.201 0.799
38 H 0.108 0.892
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.395 -28.241 -6.271 28.962
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.560 5.560
2 C -0.221 4.221
3 Si 0.838 3.162
4 H -0.189 1.189
5 H -0.195 1.195
6 H -0.176 1.176
7 C -0.490 4.490
8 H 0.118 0.882
9 O -0.142 6.142
10 C 0.060 3.940
11 C -0.264 4.264
12 C -0.093 4.093
13 C -0.195 4.195
14 C -0.028 4.028
15 C -0.120 4.120
16 C 0.307 3.693
17 O -0.445 6.445
18 N -0.262 5.262
19 N -0.233 5.233
20 C 0.092 3.908
21 C -0.179 4.179
22 C -0.077 4.077
23 C -0.126 4.126
24 Cl 0.020 6.980
25 N -0.061 5.061
26 N -0.173 5.173
27 C -0.209 4.209
28 H 0.081 0.919
29 H 0.135 0.865
30 H 0.163 0.837
31 H 0.167 0.833
32 H 0.147 0.853
33 H 0.170 0.830
34 H 0.286 0.714
35 H 0.295 0.705
36 H 0.213 0.787
37 H 0.218 0.782
38 H 0.126 0.874
Dipole moment (debyes) X Y Z Total
from point charges 1.122 -27.704 -5.164 28.204
hybrid contribution -0.064 1.016 -1.475 1.792
sum 1.058 -26.689 -6.639 27.522
Atomic orbital electron populations
1.70187 1.08019 1.28728 1.49082 1.26600 0.96877 1.02735 0.95931
0.84581 0.77842 0.74539 0.79195 1.18942 1.19488 1.17582 1.21818
0.92491 0.81497 1.53159 0.88212 1.83935 1.35921 1.12579 1.81741
1.19891 0.91674 0.87969 0.94476 1.21313 0.93142 1.00271 1.11625
1.21141 1.00248 0.91498 0.96364 1.20998 0.93453 0.98114 1.06932
1.19081 0.93703 0.92479 0.97528 1.20612 1.05031 0.93730 0.92610
1.21228 0.76465 0.78777 0.92781 1.90782 1.52117 1.60549 1.41032
1.44960 1.61789 1.19892 0.99516 1.43132 1.63504 1.16555 1.00132
1.20207 0.90955 0.86423 0.93203 1.22106 1.01732 0.96747 0.97307
1.22390 0.92524 0.93054 0.99765 1.23435 1.03049 0.93142 0.92940
1.98417 1.77829 1.23407 1.98384 1.72514 1.06892 1.02053 1.24604
1.72903 1.15802 1.03056 1.25500 1.20232 0.99374 0.90425 1.10856
0.91892 0.86535 0.83719 0.83252 0.85314 0.83023 0.71423 0.70531
0.78671 0.78237 0.87401
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -57.55 13.67 21.62 0.30 -57.25 16
2 C -0.02 -1.41 5.49 84.84 0.47 -0.94 16
3 Si 1.02 43.60 29.55 68.60 2.03 45.63 16
4 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16
5 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16
6 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16
7 C -0.41 -24.68 9.49 67.92 0.64 -24.03 16
8 H 0.10 5.48 5.20 -2.91 -0.02 5.46 16
9 O -0.23 -14.55 9.76 -22.72 -0.22 -14.77 16
10 C 0.11 5.65 6.65 22.58 0.15 5.80 16
11 C -0.24 -10.97 9.17 22.39 0.21 -10.77 16
12 C -0.07 -2.60 10.04 22.25 0.22 -2.38 16
13 C -0.18 -5.43 9.70 22.30 0.22 -5.21 16
14 C -0.03 -0.89 4.37 -19.88 -0.09 -0.97 16
15 C -0.08 -1.65 5.83 29.11 0.17 -1.48 16
16 C 0.52 12.49 7.94 87.66 0.70 13.18 16
17 O -0.57 -19.15 15.87 -3.03 -0.05 -19.19 16
18 N -0.51 -9.45 6.29 -173.54 -1.09 -10.54 16
19 N -0.50 -8.58 6.43 -55.11 -0.35 -8.93 16
20 C 0.34 5.30 7.68 133.10 1.02 6.33 16
21 C -0.15 -1.28 10.06 22.64 0.23 -1.05 16
22 C -0.05 -0.40 9.99 22.51 0.22 -0.18 16
23 C 0.05 0.78 7.37 84.86 0.63 1.41 16
24 Cl -0.01 -0.11 29.13 -2.72 -0.08 -0.18 16
25 N -0.22 -4.52 11.48 -49.83 -0.57 -5.09 16
26 N -0.32 -6.46 10.55 -55.07 -0.58 -7.04 16
27 C -0.19 -8.21 9.65 22.39 0.22 -8.00 16
28 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16
29 H 0.12 5.32 5.64 -2.91 -0.02 5.31 16
30 H 0.15 3.95 8.06 -2.91 -0.02 3.92 16
31 H 0.15 3.33 8.06 -2.91 -0.02 3.31 16
32 H 0.13 2.20 8.08 -2.39 -0.02 2.18 16
33 H 0.15 1.83 8.08 -2.39 -0.02 1.81 16
34 H 0.44 6.57 7.98 -213.32 -1.70 4.86 16
35 H 0.45 7.15 8.01 -213.33 -1.71 5.44 16
36 H 0.20 0.30 8.06 -2.91 -0.02 0.27 16
37 H 0.20 0.07 8.06 -2.91 -0.02 0.04 16
38 H 0.11 4.67 8.06 -2.91 -0.02 4.64 16
Total: -1.00 -85.52 359.07 2.13 -83.39
By element:
Atomic # 1 Polarization: 24.54 SS G_CDS: -2.25 Total: 22.29 kcal
Atomic # 6 Polarization: -33.30 SS G_CDS: 5.00 Total: -28.29 kcal
Atomic # 7 Polarization: -86.56 SS G_CDS: -2.30 Total: -88.86 kcal
Atomic # 8 Polarization: -33.70 SS G_CDS: -0.27 Total: -33.97 kcal
Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal
Atomic # 17 Polarization: -0.11 SS G_CDS: -0.08 Total: -0.18 kcal
Total: -85.52 2.13 -83.39 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000089829890.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 118.316 kcal
(2) G-P(sol) polarization free energy of solvation -85.516 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.800 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.127 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.389 kcal
(6) G-S(sol) free energy of system = (1) + (5) 34.927 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds