Wall clock time and date at job start Wed Apr 1 2020 05:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86802 * 120.00089 * 2 1 4 4 H 1.48496 * 109.47118 * 270.00074 * 3 2 1 5 5 H 1.48501 * 109.46834 * 30.00299 * 3 2 1 6 6 H 1.48502 * 109.47190 * 149.99949 * 3 2 1 7 7 C 1.38661 * 120.00112 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00004 * 179.97438 * 7 2 1 9 9 O 1.34826 * 119.99844 * 0.02562 * 7 2 1 10 10 C 1.35752 * 116.99781 * 185.05464 * 9 7 2 11 11 C 1.38897 * 120.06905 * 354.48231 * 10 9 7 12 12 C 1.38083 * 119.93167 * 179.97438 * 11 10 9 13 13 C 1.38328 * 120.06732 * 359.74748 * 12 11 10 14 14 C 1.38280 * 120.13301 * 0.51403 * 13 12 11 15 15 C 1.50710 * 119.95801 * 179.76695 * 14 13 12 16 16 C 1.50703 * 109.46788 * 269.71637 * 15 14 13 17 17 O 1.21281 * 119.99647 * 0.02562 * 16 15 14 18 18 N 1.34771 * 119.99978 * 180.02562 * 16 15 14 19 19 N 1.40095 * 120.00259 * 180.02562 * 18 16 15 20 20 C 1.39112 * 120.00069 * 180.02562 * 19 18 16 21 21 C 1.39505 * 120.13978 * 180.02562 * 20 19 18 22 22 C 1.38524 * 117.90981 * 179.97438 * 21 20 19 23 23 C 1.38959 * 118.02893 * 0.02562 * 22 21 20 24 24 Cl 1.73597 * 120.01008 * 179.97438 * 23 22 21 25 25 N 1.31869 * 119.98140 * 359.97438 * 23 22 21 26 26 N 1.28350 * 122.27050 * 0.02562 * 25 23 22 27 27 C 1.38119 * 120.07314 * 359.48435 * 14 13 12 28 28 H 0.96998 * 120.00069 * 359.97438 * 1 2 3 29 29 H 1.08006 * 120.03802 * 359.96077 * 11 10 9 30 30 H 1.07998 * 119.96699 * 180.02562 * 12 11 10 31 31 H 1.07998 * 119.92757 * 180.27637 * 13 12 11 32 32 H 1.08999 * 109.46598 * 149.72574 * 15 14 13 33 33 H 1.08991 * 109.47046 * 29.71980 * 15 14 13 34 34 H 0.97007 * 119.99504 * 0.02562 * 18 16 15 35 35 H 0.96998 * 119.99933 * 359.97438 * 19 18 16 36 36 H 1.07996 * 121.04254 * 0.24294 * 21 20 19 37 37 H 1.08003 * 120.98814 * 180.02562 * 22 21 20 38 38 H 1.07996 * 120.03369 * 180.23744 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4000 5 1 1.4470 2.6526 0.7001 6 1 3.5471 1.4402 0.7001 7 6 2.0089 -1.2008 0.0005 8 1 3.0889 -1.2008 0.0001 9 8 1.3347 -2.3684 0.0005 10 6 2.0700 -3.5046 0.1076 11 6 3.4574 -3.4394 0.0955 12 6 4.2025 -4.5967 0.2052 13 6 3.5687 -5.8196 0.3323 14 6 2.1876 -5.8883 0.3392 15 6 1.5011 -7.2233 0.4726 16 6 1.2659 -7.8062 -0.8970 17 8 1.6213 -7.1978 -1.8842 18 7 0.6608 -9.0036 -1.0250 19 7 0.4426 -9.5459 -2.2982 20 6 -0.1825 -10.7816 -2.4302 21 6 -0.4007 -11.3245 -3.6966 22 6 -1.0265 -12.5578 -3.7743 23 6 -1.3984 -13.1773 -2.5873 24 17 -2.1866 -14.7236 -2.6248 25 7 -1.1525 -12.5903 -1.4324 26 7 -0.5730 -11.4477 -1.3541 27 6 1.4367 -4.7342 0.2300 28 1 -0.4850 0.8400 0.0004 29 1 3.9530 -2.4845 0.0002 30 1 5.2813 -4.5467 0.1963 31 1 4.1537 -6.7230 0.4224 32 1 0.5455 -7.0913 0.9802 33 1 2.1301 -7.8990 1.0520 34 1 0.3763 -9.4901 -0.2353 35 1 0.7268 -9.0593 -3.0877 36 1 -0.0875 -10.8016 -4.5882 37 1 -1.2196 -13.0242 -4.7291 38 1 0.3581 -4.7882 0.2393 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089829890.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:20 Heat of formation + Delta-G solvation = 34.927248 kcal Electronic energy + Delta-G solvation = -25607.668536 eV Core-core repulsion = 21478.120286 eV Total energy + Delta-G solvation = -4129.548251 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.078 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.19375 -41.19999 -40.46504 -38.37897 -37.90708 -37.27074 -34.55563 -34.33761 -33.84565 -33.22703 -31.00871 -30.48680 -28.27568 -27.22299 -25.90068 -24.79687 -23.33165 -22.97779 -21.89220 -20.07088 -19.41593 -19.12498 -18.70204 -18.18981 -17.82826 -17.08588 -16.94741 -16.69826 -16.49735 -16.11981 -15.94624 -15.53398 -15.21343 -15.11085 -14.89374 -14.54400 -14.36071 -14.04230 -13.99229 -13.59101 -12.97986 -12.93638 -12.78356 -12.65065 -12.48658 -12.46532 -12.40158 -12.21816 -12.10425 -11.40314 -11.28948 -11.19376 -10.85817 -10.80231 -10.76527 -9.65313 -8.97504 -8.87422 -8.46621 -6.15032 -0.32236 -0.17855 0.36937 0.62847 0.75620 0.90840 1.34448 1.44137 1.48507 1.52252 2.17900 2.36591 2.53255 2.83821 3.14889 3.29245 3.42711 3.49105 3.63637 3.72094 3.83787 4.03303 4.11644 4.32675 4.42167 4.43797 4.58255 4.64108 4.69213 4.75361 4.83338 5.06271 5.13511 5.30649 5.43977 5.65423 5.73222 5.75622 6.00247 6.03461 6.24169 6.43544 6.98088 7.13242 7.52272 7.79768 8.76816 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.025164 B = 0.001625 C = 0.001576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.452656 B =17231.627545 C =17766.202083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.024 4.024 3 Si 1.019 2.981 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.252 1.252 7 C -0.414 4.414 8 H 0.101 0.899 9 O -0.235 6.235 10 C 0.110 3.890 11 C -0.244 4.244 12 C -0.075 4.075 13 C -0.177 4.177 14 C -0.027 4.027 15 C -0.079 4.079 16 C 0.520 3.480 17 O -0.568 6.568 18 N -0.513 5.513 19 N -0.503 5.503 20 C 0.335 3.665 21 C -0.145 4.145 22 C -0.049 4.049 23 C 0.052 3.948 24 Cl -0.008 7.008 25 N -0.218 5.218 26 N -0.319 5.319 27 C -0.189 4.189 28 H 0.272 0.728 29 H 0.117 0.883 30 H 0.145 0.855 31 H 0.150 0.850 32 H 0.129 0.871 33 H 0.152 0.848 34 H 0.442 0.558 35 H 0.448 0.552 36 H 0.196 0.804 37 H 0.201 0.799 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.395 -28.241 -6.271 28.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.221 4.221 3 Si 0.838 3.162 4 H -0.189 1.189 5 H -0.195 1.195 6 H -0.176 1.176 7 C -0.490 4.490 8 H 0.118 0.882 9 O -0.142 6.142 10 C 0.060 3.940 11 C -0.264 4.264 12 C -0.093 4.093 13 C -0.195 4.195 14 C -0.028 4.028 15 C -0.120 4.120 16 C 0.307 3.693 17 O -0.445 6.445 18 N -0.262 5.262 19 N -0.233 5.233 20 C 0.092 3.908 21 C -0.179 4.179 22 C -0.077 4.077 23 C -0.126 4.126 24 Cl 0.020 6.980 25 N -0.061 5.061 26 N -0.173 5.173 27 C -0.209 4.209 28 H 0.081 0.919 29 H 0.135 0.865 30 H 0.163 0.837 31 H 0.167 0.833 32 H 0.147 0.853 33 H 0.170 0.830 34 H 0.286 0.714 35 H 0.295 0.705 36 H 0.213 0.787 37 H 0.218 0.782 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.122 -27.704 -5.164 28.204 hybrid contribution -0.064 1.016 -1.475 1.792 sum 1.058 -26.689 -6.639 27.522 Atomic orbital electron populations 1.70187 1.08019 1.28728 1.49082 1.26600 0.96877 1.02735 0.95931 0.84581 0.77842 0.74539 0.79195 1.18942 1.19488 1.17582 1.21818 0.92491 0.81497 1.53159 0.88212 1.83935 1.35921 1.12579 1.81741 1.19891 0.91674 0.87969 0.94476 1.21313 0.93142 1.00271 1.11625 1.21141 1.00248 0.91498 0.96364 1.20998 0.93453 0.98114 1.06932 1.19081 0.93703 0.92479 0.97528 1.20612 1.05031 0.93730 0.92610 1.21228 0.76465 0.78777 0.92781 1.90782 1.52117 1.60549 1.41032 1.44960 1.61789 1.19892 0.99516 1.43132 1.63504 1.16555 1.00132 1.20207 0.90955 0.86423 0.93203 1.22106 1.01732 0.96747 0.97307 1.22390 0.92524 0.93054 0.99765 1.23435 1.03049 0.93142 0.92940 1.98417 1.77829 1.23407 1.98384 1.72514 1.06892 1.02053 1.24604 1.72903 1.15802 1.03056 1.25500 1.20232 0.99374 0.90425 1.10856 0.91892 0.86535 0.83719 0.83252 0.85314 0.83023 0.71423 0.70531 0.78671 0.78237 0.87401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.55 13.67 21.62 0.30 -57.25 16 2 C -0.02 -1.41 5.49 84.84 0.47 -0.94 16 3 Si 1.02 43.60 29.55 68.60 2.03 45.63 16 4 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 5 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 6 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 7 C -0.41 -24.68 9.49 67.92 0.64 -24.03 16 8 H 0.10 5.48 5.20 -2.91 -0.02 5.46 16 9 O -0.23 -14.55 9.76 -22.72 -0.22 -14.77 16 10 C 0.11 5.65 6.65 22.58 0.15 5.80 16 11 C -0.24 -10.97 9.17 22.39 0.21 -10.77 16 12 C -0.07 -2.60 10.04 22.25 0.22 -2.38 16 13 C -0.18 -5.43 9.70 22.30 0.22 -5.21 16 14 C -0.03 -0.89 4.37 -19.88 -0.09 -0.97 16 15 C -0.08 -1.65 5.83 29.11 0.17 -1.48 16 16 C 0.52 12.49 7.94 87.66 0.70 13.18 16 17 O -0.57 -19.15 15.87 -3.03 -0.05 -19.19 16 18 N -0.51 -9.45 6.29 -173.54 -1.09 -10.54 16 19 N -0.50 -8.58 6.43 -55.11 -0.35 -8.93 16 20 C 0.34 5.30 7.68 133.10 1.02 6.33 16 21 C -0.15 -1.28 10.06 22.64 0.23 -1.05 16 22 C -0.05 -0.40 9.99 22.51 0.22 -0.18 16 23 C 0.05 0.78 7.37 84.86 0.63 1.41 16 24 Cl -0.01 -0.11 29.13 -2.72 -0.08 -0.18 16 25 N -0.22 -4.52 11.48 -49.83 -0.57 -5.09 16 26 N -0.32 -6.46 10.55 -55.07 -0.58 -7.04 16 27 C -0.19 -8.21 9.65 22.39 0.22 -8.00 16 28 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 29 H 0.12 5.32 5.64 -2.91 -0.02 5.31 16 30 H 0.15 3.95 8.06 -2.91 -0.02 3.92 16 31 H 0.15 3.33 8.06 -2.91 -0.02 3.31 16 32 H 0.13 2.20 8.08 -2.39 -0.02 2.18 16 33 H 0.15 1.83 8.08 -2.39 -0.02 1.81 16 34 H 0.44 6.57 7.98 -213.32 -1.70 4.86 16 35 H 0.45 7.15 8.01 -213.33 -1.71 5.44 16 36 H 0.20 0.30 8.06 -2.91 -0.02 0.27 16 37 H 0.20 0.07 8.06 -2.91 -0.02 0.04 16 38 H 0.11 4.67 8.06 -2.91 -0.02 4.64 16 Total: -1.00 -85.52 359.07 2.13 -83.39 By element: Atomic # 1 Polarization: 24.54 SS G_CDS: -2.25 Total: 22.29 kcal Atomic # 6 Polarization: -33.30 SS G_CDS: 5.00 Total: -28.29 kcal Atomic # 7 Polarization: -86.56 SS G_CDS: -2.30 Total: -88.86 kcal Atomic # 8 Polarization: -33.70 SS G_CDS: -0.27 Total: -33.97 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 17 Polarization: -0.11 SS G_CDS: -0.08 Total: -0.18 kcal Total: -85.52 2.13 -83.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089829890.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.316 kcal (2) G-P(sol) polarization free energy of solvation -85.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds