Wall clock time and date at job start Wed Apr 1 2020 05:06:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31552 * 1
3 3 Si 1.86801 * 120.00121 * 2 1
4 4 H 1.48499 * 109.47237 * 240.00131 * 3 2 1
5 5 H 1.48500 * 109.47131 * 359.97438 * 3 2 1
6 6 H 1.48496 * 109.47376 * 119.99503 * 3 2 1
7 7 C 1.38657 * 120.00291 * 179.97438 * 2 1 3
8 8 H 1.07999 * 120.00230 * 180.02562 * 7 2 1
9 9 O 1.34828 * 119.99521 * 0.02562 * 7 2 1
10 10 C 1.35756 * 117.00036 * 185.05606 * 9 7 2
11 11 C 1.38887 * 120.06484 * 354.46284 * 10 9 7
12 12 C 1.38093 * 119.92635 * 180.02562 * 11 10 9
13 13 C 1.38298 * 120.07218 * 0.02562 * 12 11 10
14 14 C 1.50705 * 119.93144 * 179.97438 * 13 12 11
15 15 C 1.50707 * 109.46793 * 90.00140 * 14 13 12
16 16 O 1.21283 * 119.99807 * 0.02562 * 15 14 13
17 17 N 1.34772 * 119.99763 * 179.97438 * 15 14 13
18 18 N 1.40105 * 119.99793 * 179.97438 * 17 15 14
19 19 C 1.39048 * 119.99887 * 179.97438 * 18 17 15
20 20 N 1.32620 * 120.10305 * 0.02562 * 19 18 17
21 21 C 1.32271 * 119.92923 * 179.97438 * 20 19 18
22 22 C 1.38134 * 120.13388 * 0.02562 * 21 20 19
23 23 N 1.32294 * 120.20736 * 359.97438 * 22 21 20
24 24 C 1.32017 * 120.06907 * 0.02562 * 23 22 21
25 25 Cl 1.73598 * 120.06956 * 179.97438 * 24 23 22
26 26 C 1.38304 * 120.13837 * 0.25342 * 13 12 11
27 27 C 1.38102 * 120.06817 * 359.45060 * 26 13 12
28 28 H 0.97002 * 120.00347 * 0.02562 * 1 2 3
29 29 H 1.07997 * 120.03269 * 359.97438 * 11 10 9
30 30 H 1.08002 * 119.96162 * 180.02562 * 12 11 10
31 31 H 1.08997 * 109.47432 * 330.00783 * 14 13 12
32 32 H 1.08992 * 109.47608 * 210.00006 * 14 13 12
33 33 H 0.96997 * 120.00362 * 0.02562 * 17 15 14
34 34 H 0.96997 * 119.99845 * 0.02562 * 18 17 15
35 35 H 1.07996 * 119.93074 * 179.97438 * 21 20 19
36 36 H 1.08001 * 119.89619 * 179.72368 * 22 21 20
37 37 H 1.08002 * 119.96285 * 179.70204 * 26 13 12
38 38 H 1.08002 * 120.03615 * 180.27070 * 27 26 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3155 0.0000 0.0000
3 14 2.2496 1.6177 0.0000
4 1 3.1033 1.6964 -1.2125
5 1 1.2846 2.7465 -0.0006
6 1 3.1032 1.6965 1.2125
7 6 2.0089 -1.2008 0.0005
8 1 3.0889 -1.2008 0.0010
9 8 1.3347 -2.3684 0.0005
10 6 2.0699 -3.5046 0.1077
11 6 3.4572 -3.4394 0.0952
12 6 4.2023 -4.5970 0.2038
13 6 3.5685 -5.8203 0.3244
14 6 4.3847 -7.0817 0.4422
15 6 4.6631 -7.3660 1.8958
16 8 4.2399 -6.6182 2.7518
17 7 5.3814 -8.4517 2.2445
18 7 5.6406 -8.7157 3.5959
19 6 6.3812 -9.8361 3.9557
20 7 6.8436 -10.6560 3.0215
21 6 7.5482 -11.7205 3.3676
22 6 7.8029 -11.9803 4.7002
23 7 7.3442 -11.1660 5.6366
24 6 6.6401 -10.1012 5.3002
25 17 6.0376 -9.0331 6.5289
26 6 2.1872 -5.8891 0.3314
27 6 1.4364 -4.7344 0.2293
28 1 -0.4851 0.8400 -0.0004
29 1 3.9526 -2.4846 -0.0002
30 1 5.2811 -4.5470 0.1946
31 1 5.3274 -6.9556 -0.0902
32 1 3.8312 -7.9145 0.0087
33 1 5.7195 -9.0499 1.5600
34 1 5.3028 -8.1172 4.2804
35 1 7.9244 -12.3884 2.6069
36 1 8.3748 -12.8531 4.9788
37 1 1.6952 -6.8463 0.4209
38 1 0.3578 -4.7883 0.2392
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000114894513.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:06:39
Heat of formation + Delta-G solvation = 50.366924 kcal
Electronic energy + Delta-G solvation = -25803.877500 eV
Core-core repulsion = 21674.998764 eV
Total energy + Delta-G solvation = -4128.878736 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 348.078 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-41.62529 -40.03650 -38.88902 -37.26193 -36.98249 -36.29218 -34.40683 -32.93747
-32.41345 -31.38406 -30.17605 -29.40173 -26.67488 -25.31937 -24.97999 -24.04331
-21.99983 -21.71284 -20.47741 -18.98154 -18.64540 -17.99443 -17.64393 -17.09973
-16.92816 -16.31671 -16.08156 -15.40854 -15.18319 -14.73468 -14.51927 -14.36840
-13.99120 -13.84915 -13.62008 -13.42871 -13.06229 -12.72461 -12.64794 -12.42731
-12.20020 -11.91357 -11.83974 -11.57056 -11.28048 -11.26417 -10.90206 -10.79623
-10.65858 -10.44435 -10.16791 -9.89423 -9.77505 -9.34116 -8.82658 -8.17180
-8.02263 -7.19697 -6.45015 -4.03656 0.21531 0.59778 1.25287 1.39122
2.23655 2.29786 2.49199 3.10043 3.12756 3.13800 3.16694 3.17587
3.68455 3.92908 3.96972 4.28630 4.51137 4.55670 4.70910 4.84363
5.06607 5.16045 5.18998 5.29401 5.54865 5.60205 5.69497 5.81869
6.01885 6.20297 6.39734 6.54311 6.67892 6.80871 6.89635 7.03555
7.12422 7.22129 7.31927 7.33896 7.43814 7.81555 7.99874 8.09583
9.00392 9.70123 10.72791
Molecular weight = 348.08amu
Principal moments of inertia in cm(-1)
A = 0.020487 B = 0.001850 C = 0.001774
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1366.411479 B =15135.269654 C =15777.020307
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.862 5.862
2 C 0.039 3.961
3 Si 0.941 3.059
4 H -0.270 1.270
5 H -0.278 1.278
6 H -0.270 1.270
7 C -0.392 4.392
8 H 0.092 0.908
9 O -0.176 6.176
10 C 0.158 3.842
11 C -0.233 4.233
12 C -0.053 4.053
13 C -0.177 4.177
14 C -0.064 4.064
15 C 0.508 3.492
16 O -0.515 6.515
17 N -0.527 5.527
18 N -0.498 5.498
19 C 0.381 3.619
20 N -0.495 5.495
21 C 0.119 3.881
22 C -0.008 4.008
23 N -0.386 5.386
24 C 0.063 3.937
25 Cl -0.013 7.013
26 C -0.057 4.057
27 C -0.192 4.192
28 H 0.271 0.729
29 H 0.127 0.873
30 H 0.105 0.895
31 H 0.099 0.901
32 H 0.100 0.900
33 H 0.430 0.570
34 H 0.447 0.553
35 H 0.181 0.819
36 H 0.178 0.822
37 H 0.109 0.891
38 H 0.117 0.883
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 16.023 -24.250 4.842 29.466
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.497 5.497
2 C -0.165 4.165
3 Si 0.766 3.234
4 H -0.195 1.195
5 H -0.203 1.203
6 H -0.195 1.195
7 C -0.468 4.468
8 H 0.109 0.891
9 O -0.079 6.079
10 C 0.104 3.896
11 C -0.252 4.252
12 C -0.072 4.072
13 C -0.178 4.178
14 C -0.105 4.105
15 C 0.295 3.705
16 O -0.387 6.387
17 N -0.277 5.277
18 N -0.225 5.225
19 C 0.138 3.862
20 N -0.220 5.220
21 C -0.043 4.043
22 C -0.170 4.170
23 N -0.101 5.101
24 C -0.115 4.115
25 Cl 0.015 6.985
26 C -0.075 4.075
27 C -0.211 4.211
28 H 0.081 0.919
29 H 0.145 0.855
30 H 0.123 0.877
31 H 0.117 0.883
32 H 0.118 0.882
33 H 0.272 0.728
34 H 0.294 0.706
35 H 0.198 0.802
36 H 0.195 0.805
37 H 0.127 0.873
38 H 0.135 0.865
Dipole moment (debyes) X Y Z Total
from point charges 15.117 -23.245 5.358 28.241
hybrid contribution 0.600 0.741 0.209 0.976
sum 15.717 -22.504 5.568 28.008
Atomic orbital electron populations
1.70027 1.05960 1.27808 1.45862 1.25296 0.95853 0.98853 0.96517
0.85779 0.78708 0.79746 0.79194 1.19492 1.20267 1.19483 1.21288
0.91792 0.80813 1.52916 0.89079 1.83977 1.34407 1.11488 1.78044
1.19402 0.90309 0.88040 0.91812 1.21104 0.93799 0.98789 1.11556
1.20513 0.98091 0.91722 0.96844 1.18536 0.93146 0.92441 1.13680
1.20320 1.01835 0.98643 0.89736 1.21660 0.76964 0.78706 0.93152
1.90791 1.49759 1.46520 1.51642 1.45299 1.57432 1.29176 0.95810
1.43427 1.55453 1.24781 0.98856 1.18657 0.90892 0.88084 0.88529
1.68016 1.14391 1.05706 1.33875 1.23623 0.91332 0.92300 0.97033
1.23373 1.03481 1.00784 0.89318 1.67648 1.04433 1.00482 1.37567
1.21712 1.05669 0.97067 0.87030 1.98437 1.85180 1.60618 1.54301
1.20408 0.92683 0.96788 0.97628 1.20158 0.99548 0.90253 1.11160
0.91947 0.85525 0.87717 0.88258 0.88214 0.72756 0.70568 0.80181
0.80534 0.87270 0.86472
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.86 -25.43 13.67 55.48 0.76 -24.67 16
2 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16
3 Si 0.94 20.67 29.55 -169.99 -5.02 15.65 16
4 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16
5 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16
6 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16
7 C -0.39 -11.04 9.49 30.89 0.29 -10.75 16
8 H 0.09 2.37 5.20 -52.49 -0.27 2.10 16
9 O -0.18 -5.08 9.76 0.03 0.00 -5.08 16
10 C 0.16 3.88 6.65 -39.11 -0.26 3.62 16
11 C -0.23 -5.12 9.17 -39.39 -0.36 -5.48 16
12 C -0.05 -0.97 9.69 -39.61 -0.38 -1.36 16
13 C -0.18 -2.91 4.38 -104.57 -0.46 -3.37 16
14 C -0.06 -0.72 5.83 -29.03 -0.17 -0.89 16
15 C 0.51 6.54 7.94 -10.98 -0.09 6.45 16
16 O -0.52 -9.08 15.87 5.55 0.09 -8.99 16
17 N -0.53 -5.33 6.29 31.22 0.20 -5.14 16
18 N -0.50 -5.36 6.38 31.24 0.20 -5.16 16
19 C 0.38 3.74 7.60 -154.67 -1.18 2.56 16
20 N -0.49 -4.06 9.54 -12.21 -0.12 -4.17 16
21 C 0.12 0.63 11.21 -17.40 -0.20 0.43 16
22 C -0.01 -0.05 11.21 -17.39 -0.19 -0.24 16
23 N -0.39 -3.56 10.48 -10.01 -0.10 -3.67 16
24 C 0.06 0.63 7.31 -17.02 -0.12 0.50 16
25 Cl -0.01 -0.13 27.78 -51.86 -1.44 -1.57 16
26 C -0.06 -1.01 9.69 -39.61 -0.38 -1.39 16
27 C -0.19 -4.10 9.99 -39.40 -0.39 -4.50 16
28 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16
29 H 0.13 2.78 5.64 -52.49 -0.30 2.48 16
30 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16
31 H 0.10 0.85 8.08 -51.93 -0.42 0.43 16
32 H 0.10 0.84 8.08 -51.93 -0.42 0.42 16
33 H 0.43 3.28 7.97 -182.60 -1.46 1.82 16
34 H 0.45 5.18 6.68 -182.60 -1.22 3.96 16
35 H 0.18 0.22 8.06 -52.49 -0.42 -0.20 16
36 H 0.18 0.41 8.06 -52.49 -0.42 -0.02 16
37 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16
38 H 0.12 2.42 8.06 -52.49 -0.42 2.00 16
LS Contribution 356.56 15.07 5.37 5.37
Total: -1.00 -35.34 356.56 -9.39 -44.73
By element:
Atomic # 1 Polarization: 11.45 SS G_CDS: -5.33 Total: 6.11 kcal
Atomic # 6 Polarization: -9.43 SS G_CDS: -3.99 Total: -13.42 kcal
Atomic # 7 Polarization: -43.74 SS G_CDS: 0.93 Total: -42.81 kcal
Atomic # 8 Polarization: -14.16 SS G_CDS: 0.09 Total: -14.07 kcal
Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal
Atomic # 17 Polarization: -0.13 SS G_CDS: -1.44 Total: -1.57 kcal
Total LS contribution 5.37 Total: 5.37 kcal
Total: -35.34 -9.39 -44.73 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000114894513.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 95.097 kcal
(2) G-P(sol) polarization free energy of solvation -35.338 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.759 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.392 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.730 kcal
(6) G-S(sol) free energy of system = (1) + (5) 50.367 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds