Wall clock time and date at job start Wed Apr 1 2020 05:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86801 * 120.00121 * 2 1 4 4 H 1.48499 * 109.47237 * 240.00131 * 3 2 1 5 5 H 1.48500 * 109.47131 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47376 * 119.99503 * 3 2 1 7 7 C 1.38657 * 120.00291 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00230 * 180.02562 * 7 2 1 9 9 O 1.34828 * 119.99521 * 0.02562 * 7 2 1 10 10 C 1.35756 * 117.00036 * 185.05606 * 9 7 2 11 11 C 1.38887 * 120.06484 * 354.46284 * 10 9 7 12 12 C 1.38093 * 119.92635 * 180.02562 * 11 10 9 13 13 C 1.38298 * 120.07218 * 0.02562 * 12 11 10 14 14 C 1.50705 * 119.93144 * 179.97438 * 13 12 11 15 15 C 1.50707 * 109.46793 * 90.00140 * 14 13 12 16 16 O 1.21283 * 119.99807 * 0.02562 * 15 14 13 17 17 N 1.34772 * 119.99763 * 179.97438 * 15 14 13 18 18 N 1.40105 * 119.99793 * 179.97438 * 17 15 14 19 19 C 1.39048 * 119.99887 * 179.97438 * 18 17 15 20 20 N 1.32620 * 120.10305 * 0.02562 * 19 18 17 21 21 C 1.32271 * 119.92923 * 179.97438 * 20 19 18 22 22 C 1.38134 * 120.13388 * 0.02562 * 21 20 19 23 23 N 1.32294 * 120.20736 * 359.97438 * 22 21 20 24 24 C 1.32017 * 120.06907 * 0.02562 * 23 22 21 25 25 Cl 1.73598 * 120.06956 * 179.97438 * 24 23 22 26 26 C 1.38304 * 120.13837 * 0.25342 * 13 12 11 27 27 C 1.38102 * 120.06817 * 359.45060 * 26 13 12 28 28 H 0.97002 * 120.00347 * 0.02562 * 1 2 3 29 29 H 1.07997 * 120.03269 * 359.97438 * 11 10 9 30 30 H 1.08002 * 119.96162 * 180.02562 * 12 11 10 31 31 H 1.08997 * 109.47432 * 330.00783 * 14 13 12 32 32 H 1.08992 * 109.47608 * 210.00006 * 14 13 12 33 33 H 0.96997 * 120.00362 * 0.02562 * 17 15 14 34 34 H 0.96997 * 119.99845 * 0.02562 * 18 17 15 35 35 H 1.07996 * 119.93074 * 179.97438 * 21 20 19 36 36 H 1.08001 * 119.89619 * 179.72368 * 22 21 20 37 37 H 1.08002 * 119.96285 * 179.70204 * 26 13 12 38 38 H 1.08002 * 120.03615 * 180.27070 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2846 2.7465 -0.0006 6 1 3.1032 1.6965 1.2125 7 6 2.0089 -1.2008 0.0005 8 1 3.0889 -1.2008 0.0010 9 8 1.3347 -2.3684 0.0005 10 6 2.0699 -3.5046 0.1077 11 6 3.4572 -3.4394 0.0952 12 6 4.2023 -4.5970 0.2038 13 6 3.5685 -5.8203 0.3244 14 6 4.3847 -7.0817 0.4422 15 6 4.6631 -7.3660 1.8958 16 8 4.2399 -6.6182 2.7518 17 7 5.3814 -8.4517 2.2445 18 7 5.6406 -8.7157 3.5959 19 6 6.3812 -9.8361 3.9557 20 7 6.8436 -10.6560 3.0215 21 6 7.5482 -11.7205 3.3676 22 6 7.8029 -11.9803 4.7002 23 7 7.3442 -11.1660 5.6366 24 6 6.6401 -10.1012 5.3002 25 17 6.0376 -9.0331 6.5289 26 6 2.1872 -5.8891 0.3314 27 6 1.4364 -4.7344 0.2293 28 1 -0.4851 0.8400 -0.0004 29 1 3.9526 -2.4846 -0.0002 30 1 5.2811 -4.5470 0.1946 31 1 5.3274 -6.9556 -0.0902 32 1 3.8312 -7.9145 0.0087 33 1 5.7195 -9.0499 1.5600 34 1 5.3028 -8.1172 4.2804 35 1 7.9244 -12.3884 2.6069 36 1 8.3748 -12.8531 4.9788 37 1 1.6952 -6.8463 0.4209 38 1 0.3578 -4.7883 0.2392 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000114894513.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:39 Heat of formation + Delta-G solvation = 50.366924 kcal Electronic energy + Delta-G solvation = -25803.877500 eV Core-core repulsion = 21674.998764 eV Total energy + Delta-G solvation = -4128.878736 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.078 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.62529 -40.03650 -38.88902 -37.26193 -36.98249 -36.29218 -34.40683 -32.93747 -32.41345 -31.38406 -30.17605 -29.40173 -26.67488 -25.31937 -24.97999 -24.04331 -21.99983 -21.71284 -20.47741 -18.98154 -18.64540 -17.99443 -17.64393 -17.09973 -16.92816 -16.31671 -16.08156 -15.40854 -15.18319 -14.73468 -14.51927 -14.36840 -13.99120 -13.84915 -13.62008 -13.42871 -13.06229 -12.72461 -12.64794 -12.42731 -12.20020 -11.91357 -11.83974 -11.57056 -11.28048 -11.26417 -10.90206 -10.79623 -10.65858 -10.44435 -10.16791 -9.89423 -9.77505 -9.34116 -8.82658 -8.17180 -8.02263 -7.19697 -6.45015 -4.03656 0.21531 0.59778 1.25287 1.39122 2.23655 2.29786 2.49199 3.10043 3.12756 3.13800 3.16694 3.17587 3.68455 3.92908 3.96972 4.28630 4.51137 4.55670 4.70910 4.84363 5.06607 5.16045 5.18998 5.29401 5.54865 5.60205 5.69497 5.81869 6.01885 6.20297 6.39734 6.54311 6.67892 6.80871 6.89635 7.03555 7.12422 7.22129 7.31927 7.33896 7.43814 7.81555 7.99874 8.09583 9.00392 9.70123 10.72791 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.020487 B = 0.001850 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.411479 B =15135.269654 C =15777.020307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.392 4.392 8 H 0.092 0.908 9 O -0.176 6.176 10 C 0.158 3.842 11 C -0.233 4.233 12 C -0.053 4.053 13 C -0.177 4.177 14 C -0.064 4.064 15 C 0.508 3.492 16 O -0.515 6.515 17 N -0.527 5.527 18 N -0.498 5.498 19 C 0.381 3.619 20 N -0.495 5.495 21 C 0.119 3.881 22 C -0.008 4.008 23 N -0.386 5.386 24 C 0.063 3.937 25 Cl -0.013 7.013 26 C -0.057 4.057 27 C -0.192 4.192 28 H 0.271 0.729 29 H 0.127 0.873 30 H 0.105 0.895 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.430 0.570 34 H 0.447 0.553 35 H 0.181 0.819 36 H 0.178 0.822 37 H 0.109 0.891 38 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.023 -24.250 4.842 29.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.468 4.468 8 H 0.109 0.891 9 O -0.079 6.079 10 C 0.104 3.896 11 C -0.252 4.252 12 C -0.072 4.072 13 C -0.178 4.178 14 C -0.105 4.105 15 C 0.295 3.705 16 O -0.387 6.387 17 N -0.277 5.277 18 N -0.225 5.225 19 C 0.138 3.862 20 N -0.220 5.220 21 C -0.043 4.043 22 C -0.170 4.170 23 N -0.101 5.101 24 C -0.115 4.115 25 Cl 0.015 6.985 26 C -0.075 4.075 27 C -0.211 4.211 28 H 0.081 0.919 29 H 0.145 0.855 30 H 0.123 0.877 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.272 0.728 34 H 0.294 0.706 35 H 0.198 0.802 36 H 0.195 0.805 37 H 0.127 0.873 38 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 15.117 -23.245 5.358 28.241 hybrid contribution 0.600 0.741 0.209 0.976 sum 15.717 -22.504 5.568 28.008 Atomic orbital electron populations 1.70027 1.05960 1.27808 1.45862 1.25296 0.95853 0.98853 0.96517 0.85779 0.78708 0.79746 0.79194 1.19492 1.20267 1.19483 1.21288 0.91792 0.80813 1.52916 0.89079 1.83977 1.34407 1.11488 1.78044 1.19402 0.90309 0.88040 0.91812 1.21104 0.93799 0.98789 1.11556 1.20513 0.98091 0.91722 0.96844 1.18536 0.93146 0.92441 1.13680 1.20320 1.01835 0.98643 0.89736 1.21660 0.76964 0.78706 0.93152 1.90791 1.49759 1.46520 1.51642 1.45299 1.57432 1.29176 0.95810 1.43427 1.55453 1.24781 0.98856 1.18657 0.90892 0.88084 0.88529 1.68016 1.14391 1.05706 1.33875 1.23623 0.91332 0.92300 0.97033 1.23373 1.03481 1.00784 0.89318 1.67648 1.04433 1.00482 1.37567 1.21712 1.05669 0.97067 0.87030 1.98437 1.85180 1.60618 1.54301 1.20408 0.92683 0.96788 0.97628 1.20158 0.99548 0.90253 1.11160 0.91947 0.85525 0.87717 0.88258 0.88214 0.72756 0.70568 0.80181 0.80534 0.87270 0.86472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.43 13.67 55.48 0.76 -24.67 16 2 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 20.67 29.55 -169.99 -5.02 15.65 16 4 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 5 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 6 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 7 C -0.39 -11.04 9.49 30.89 0.29 -10.75 16 8 H 0.09 2.37 5.20 -52.49 -0.27 2.10 16 9 O -0.18 -5.08 9.76 0.03 0.00 -5.08 16 10 C 0.16 3.88 6.65 -39.11 -0.26 3.62 16 11 C -0.23 -5.12 9.17 -39.39 -0.36 -5.48 16 12 C -0.05 -0.97 9.69 -39.61 -0.38 -1.36 16 13 C -0.18 -2.91 4.38 -104.57 -0.46 -3.37 16 14 C -0.06 -0.72 5.83 -29.03 -0.17 -0.89 16 15 C 0.51 6.54 7.94 -10.98 -0.09 6.45 16 16 O -0.52 -9.08 15.87 5.55 0.09 -8.99 16 17 N -0.53 -5.33 6.29 31.22 0.20 -5.14 16 18 N -0.50 -5.36 6.38 31.24 0.20 -5.16 16 19 C 0.38 3.74 7.60 -154.67 -1.18 2.56 16 20 N -0.49 -4.06 9.54 -12.21 -0.12 -4.17 16 21 C 0.12 0.63 11.21 -17.40 -0.20 0.43 16 22 C -0.01 -0.05 11.21 -17.39 -0.19 -0.24 16 23 N -0.39 -3.56 10.48 -10.01 -0.10 -3.67 16 24 C 0.06 0.63 7.31 -17.02 -0.12 0.50 16 25 Cl -0.01 -0.13 27.78 -51.86 -1.44 -1.57 16 26 C -0.06 -1.01 9.69 -39.61 -0.38 -1.39 16 27 C -0.19 -4.10 9.99 -39.40 -0.39 -4.50 16 28 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.13 2.78 5.64 -52.49 -0.30 2.48 16 30 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 31 H 0.10 0.85 8.08 -51.93 -0.42 0.43 16 32 H 0.10 0.84 8.08 -51.93 -0.42 0.42 16 33 H 0.43 3.28 7.97 -182.60 -1.46 1.82 16 34 H 0.45 5.18 6.68 -182.60 -1.22 3.96 16 35 H 0.18 0.22 8.06 -52.49 -0.42 -0.20 16 36 H 0.18 0.41 8.06 -52.49 -0.42 -0.02 16 37 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 38 H 0.12 2.42 8.06 -52.49 -0.42 2.00 16 LS Contribution 356.56 15.07 5.37 5.37 Total: -1.00 -35.34 356.56 -9.39 -44.73 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -5.33 Total: 6.11 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: -3.99 Total: -13.42 kcal Atomic # 7 Polarization: -43.74 SS G_CDS: 0.93 Total: -42.81 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: 0.09 Total: -14.07 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 17 Polarization: -0.13 SS G_CDS: -1.44 Total: -1.57 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.34 -9.39 -44.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114894513.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.097 kcal (2) G-P(sol) polarization free energy of solvation -35.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds