Wall clock time and date at job start Wed Apr 1 2020 05:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86801 * 120.00121 * 2 1 4 4 H 1.48499 * 109.47237 * 240.00131 * 3 2 1 5 5 H 1.48500 * 109.47131 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47376 * 119.99503 * 3 2 1 7 7 C 1.38657 * 120.00291 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00230 * 180.02562 * 7 2 1 9 9 O 1.34828 * 119.99521 * 0.02562 * 7 2 1 10 10 C 1.35756 * 117.00036 * 185.05606 * 9 7 2 11 11 C 1.38887 * 120.06484 * 354.46284 * 10 9 7 12 12 C 1.38093 * 119.92635 * 180.02562 * 11 10 9 13 13 C 1.38298 * 120.07218 * 0.02562 * 12 11 10 14 14 C 1.50705 * 119.93144 * 179.97438 * 13 12 11 15 15 C 1.50707 * 109.46793 * 90.00140 * 14 13 12 16 16 O 1.21283 * 119.99807 * 0.02562 * 15 14 13 17 17 N 1.34772 * 119.99763 * 179.97438 * 15 14 13 18 18 N 1.40105 * 119.99793 * 179.97438 * 17 15 14 19 19 C 1.39048 * 119.99887 * 179.97438 * 18 17 15 20 20 N 1.32620 * 120.10305 * 0.02562 * 19 18 17 21 21 C 1.32271 * 119.92923 * 179.97438 * 20 19 18 22 22 C 1.38134 * 120.13388 * 0.02562 * 21 20 19 23 23 N 1.32294 * 120.20736 * 359.97438 * 22 21 20 24 24 C 1.32017 * 120.06907 * 0.02562 * 23 22 21 25 25 Cl 1.73598 * 120.06956 * 179.97438 * 24 23 22 26 26 C 1.38304 * 120.13837 * 0.25342 * 13 12 11 27 27 C 1.38102 * 120.06817 * 359.45060 * 26 13 12 28 28 H 0.97002 * 120.00347 * 0.02562 * 1 2 3 29 29 H 1.07997 * 120.03269 * 359.97438 * 11 10 9 30 30 H 1.08002 * 119.96162 * 180.02562 * 12 11 10 31 31 H 1.08997 * 109.47432 * 330.00783 * 14 13 12 32 32 H 1.08992 * 109.47608 * 210.00006 * 14 13 12 33 33 H 0.96997 * 120.00362 * 0.02562 * 17 15 14 34 34 H 0.96997 * 119.99845 * 0.02562 * 18 17 15 35 35 H 1.07996 * 119.93074 * 179.97438 * 21 20 19 36 36 H 1.08001 * 119.89619 * 179.72368 * 22 21 20 37 37 H 1.08002 * 119.96285 * 179.70204 * 26 13 12 38 38 H 1.08002 * 120.03615 * 180.27070 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2846 2.7465 -0.0006 6 1 3.1032 1.6965 1.2125 7 6 2.0089 -1.2008 0.0005 8 1 3.0889 -1.2008 0.0010 9 8 1.3347 -2.3684 0.0005 10 6 2.0699 -3.5046 0.1077 11 6 3.4572 -3.4394 0.0952 12 6 4.2023 -4.5970 0.2038 13 6 3.5685 -5.8203 0.3244 14 6 4.3847 -7.0817 0.4422 15 6 4.6631 -7.3660 1.8958 16 8 4.2399 -6.6182 2.7518 17 7 5.3814 -8.4517 2.2445 18 7 5.6406 -8.7157 3.5959 19 6 6.3812 -9.8361 3.9557 20 7 6.8436 -10.6560 3.0215 21 6 7.5482 -11.7205 3.3676 22 6 7.8029 -11.9803 4.7002 23 7 7.3442 -11.1660 5.6366 24 6 6.6401 -10.1012 5.3002 25 17 6.0376 -9.0331 6.5289 26 6 2.1872 -5.8891 0.3314 27 6 1.4364 -4.7344 0.2293 28 1 -0.4851 0.8400 -0.0004 29 1 3.9526 -2.4846 -0.0002 30 1 5.2811 -4.5470 0.1946 31 1 5.3274 -6.9556 -0.0902 32 1 3.8312 -7.9145 0.0087 33 1 5.7195 -9.0499 1.5600 34 1 5.3028 -8.1172 4.2804 35 1 7.9244 -12.3884 2.6069 36 1 8.3748 -12.8531 4.9788 37 1 1.6952 -6.8463 0.4209 38 1 0.3578 -4.7883 0.2392 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000114894513.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:39 Heat of formation + Delta-G solvation = 24.496616 kcal Electronic energy + Delta-G solvation = -25804.999321 eV Core-core repulsion = 21674.998764 eV Total energy + Delta-G solvation = -4130.000557 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.078 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.22362 -41.15985 -40.46846 -38.37931 -37.91088 -37.42252 -35.05259 -34.41809 -33.71897 -32.62859 -31.77108 -30.19576 -28.09885 -26.98558 -25.73165 -24.71330 -23.63418 -22.87100 -21.76453 -19.88571 -19.71820 -19.39534 -18.80967 -18.20410 -17.87465 -17.08705 -16.88215 -16.48614 -16.41227 -16.01914 -15.90602 -15.63583 -15.51019 -15.19759 -14.86884 -14.41720 -14.33998 -14.18169 -13.75775 -13.57955 -13.20389 -12.96950 -12.81635 -12.80218 -12.52640 -12.48269 -12.32552 -12.26325 -12.14761 -11.97799 -11.25137 -11.17728 -10.78334 -10.60303 -10.36983 -9.75519 -8.91606 -8.75184 -8.47579 -6.15760 -0.33810 0.01614 0.46437 0.62704 0.64037 0.86536 1.33403 1.44708 1.49983 1.54398 2.17246 2.48250 2.55433 2.82715 3.11608 3.13882 3.36484 3.52403 3.67532 3.85158 4.04636 4.06126 4.14537 4.21353 4.43330 4.48309 4.60160 4.70633 4.81065 5.06833 5.13347 5.14715 5.29627 5.32668 5.56889 5.72297 5.76874 5.87180 6.02663 6.13249 6.24424 6.44765 6.63275 6.96843 7.22245 7.78258 8.75514 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.020487 B = 0.001850 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.411479 B =15135.269654 C =15777.020307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.025 4.025 3 Si 1.019 2.981 4 H -0.254 1.254 5 H -0.271 1.271 6 H -0.260 1.260 7 C -0.414 4.414 8 H 0.101 0.899 9 O -0.234 6.234 10 C 0.113 3.887 11 C -0.246 4.246 12 C -0.057 4.057 13 C -0.148 4.148 14 C -0.061 4.061 15 C 0.511 3.489 16 O -0.573 6.573 17 N -0.507 5.507 18 N -0.514 5.514 19 C 0.368 3.632 20 N -0.499 5.499 21 C 0.130 3.870 22 C 0.004 3.996 23 N -0.412 5.412 24 C 0.040 3.960 25 Cl -0.030 7.030 26 C -0.054 4.054 27 C -0.208 4.208 28 H 0.273 0.727 29 H 0.117 0.883 30 H 0.141 0.859 31 H 0.140 0.860 32 H 0.142 0.858 33 H 0.444 0.556 34 H 0.440 0.560 35 H 0.229 0.771 36 H 0.216 0.784 37 H 0.149 0.851 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.753 -28.222 3.931 34.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.222 4.222 3 Si 0.838 3.162 4 H -0.179 1.179 5 H -0.195 1.195 6 H -0.185 1.185 7 C -0.490 4.490 8 H 0.118 0.882 9 O -0.140 6.140 10 C 0.063 3.937 11 C -0.265 4.265 12 C -0.075 4.075 13 C -0.149 4.149 14 C -0.102 4.102 15 C 0.299 3.701 16 O -0.450 6.450 17 N -0.257 5.257 18 N -0.241 5.241 19 C 0.128 3.872 20 N -0.224 5.224 21 C -0.032 4.032 22 C -0.159 4.159 23 N -0.128 5.128 24 C -0.135 4.135 25 Cl -0.002 7.002 26 C -0.072 4.072 27 C -0.227 4.227 28 H 0.082 0.918 29 H 0.135 0.865 30 H 0.159 0.841 31 H 0.158 0.842 32 H 0.160 0.840 33 H 0.289 0.711 34 H 0.286 0.714 35 H 0.245 0.755 36 H 0.232 0.768 37 H 0.167 0.833 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 18.901 -27.310 4.439 33.509 hybrid contribution -0.280 1.343 0.520 1.467 sum 18.621 -25.967 4.959 32.336 Atomic orbital electron populations 1.70179 1.08005 1.28840 1.48881 1.26613 0.96898 1.02782 0.95904 0.84648 0.77402 0.74251 0.79907 1.17857 1.19519 1.18488 1.21778 0.92483 0.81501 1.53259 0.88212 1.83938 1.36009 1.12622 1.81460 1.19978 0.91722 0.87975 0.94056 1.21236 0.93091 1.00107 1.12082 1.20962 0.99824 0.91057 0.95626 1.19161 0.93236 0.94290 1.08247 1.20456 1.03465 0.96946 0.89313 1.21752 0.76555 0.78585 0.93171 1.90799 1.52380 1.48613 1.53179 1.44995 1.56080 1.28418 0.96186 1.43458 1.56572 1.25458 0.98644 1.18668 0.91485 0.88320 0.88733 1.68097 1.14565 1.06223 1.33518 1.24469 0.89262 0.91406 0.98062 1.24169 1.01817 1.00631 0.89235 1.67662 1.05116 1.00921 1.39078 1.21685 1.07142 0.97782 0.86891 1.98422 1.85528 1.61308 1.54919 1.20908 0.93513 0.96976 0.95803 1.20450 0.99921 0.90731 1.11644 0.91846 0.86533 0.84132 0.84229 0.83992 0.71086 0.71413 0.75466 0.76757 0.83297 0.87082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.86 13.67 21.61 0.30 -57.57 16 2 C -0.02 -1.44 5.49 84.83 0.47 -0.97 16 3 Si 1.02 43.99 29.55 68.60 2.03 46.02 16 4 H -0.25 -10.20 7.11 99.48 0.71 -9.49 16 5 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 6 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 7 C -0.41 -24.87 9.49 67.92 0.64 -24.23 16 8 H 0.10 5.51 5.20 -2.91 -0.02 5.49 16 9 O -0.23 -14.55 9.76 -22.79 -0.22 -14.77 16 10 C 0.11 5.84 6.65 22.58 0.15 5.99 16 11 C -0.25 -11.07 9.17 22.39 0.21 -10.86 16 12 C -0.06 -1.96 9.69 22.25 0.22 -1.74 16 13 C -0.15 -4.39 4.38 -19.83 -0.09 -4.48 16 14 C -0.06 -1.04 5.83 29.11 0.17 -0.87 16 15 C 0.51 11.44 7.94 87.66 0.70 12.14 16 16 O -0.57 -19.40 15.87 -3.04 -0.05 -19.45 16 17 N -0.51 -8.62 6.29 -173.53 -1.09 -9.71 16 18 N -0.51 -10.28 6.38 -55.08 -0.35 -10.63 16 19 C 0.37 6.49 7.60 133.06 1.01 7.50 16 20 N -0.50 -6.33 9.54 -192.54 -1.84 -8.17 16 21 C 0.13 0.74 11.21 84.60 0.95 1.69 16 22 C 0.00 0.03 11.21 84.60 0.95 0.98 16 23 N -0.41 -6.75 10.48 -185.58 -1.94 -8.69 16 24 C 0.04 0.75 7.31 84.96 0.62 1.37 16 25 Cl -0.03 -0.60 27.78 -2.72 -0.08 -0.67 16 26 C -0.05 -1.81 9.69 22.25 0.22 -1.60 16 27 C -0.21 -9.18 9.99 22.39 0.22 -8.96 16 28 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 29 H 0.12 5.34 5.64 -2.91 -0.02 5.33 16 30 H 0.14 3.82 8.06 -2.91 -0.02 3.79 16 31 H 0.14 1.40 8.08 -2.39 -0.02 1.38 16 32 H 0.14 1.37 8.08 -2.39 -0.02 1.35 16 33 H 0.44 4.79 7.97 -213.32 -1.70 3.09 16 34 H 0.44 10.14 6.68 -213.32 -1.42 8.72 16 35 H 0.23 -0.97 8.06 -2.91 -0.02 -1.00 16 36 H 0.22 -0.16 8.06 -2.91 -0.02 -0.19 16 37 H 0.15 3.79 8.06 -2.91 -0.02 3.76 16 38 H 0.11 4.87 8.06 -2.91 -0.02 4.85 16 Total: -1.00 -87.35 356.56 1.22 -86.13 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: -1.96 Total: 21.54 kcal Atomic # 6 Polarization: -30.47 SS G_CDS: 6.43 Total: -24.04 kcal Atomic # 7 Polarization: -89.84 SS G_CDS: -4.93 Total: -94.76 kcal Atomic # 8 Polarization: -33.95 SS G_CDS: -0.27 Total: -34.22 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -0.08 Total: -0.67 kcal Total: -87.35 1.22 -86.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114894513.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.629 kcal (2) G-P(sol) polarization free energy of solvation -87.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds