Wall clock time and date at job start Wed Apr 1 2020 05:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86800 * 120.00091 * 2 1 4 4 H 1.48505 * 109.46948 * 270.00104 * 3 2 1 5 5 H 1.48496 * 109.47120 * 29.99962 * 3 2 1 6 6 H 1.48496 * 109.47269 * 150.00315 * 3 2 1 7 7 C 1.38803 * 120.00175 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99853 * 359.97438 * 7 2 1 9 9 S 1.76198 * 120.00057 * 179.97438 * 7 2 1 10 10 C 1.81009 * 99.99712 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.46905 * 180.02562 * 10 9 7 12 12 O 1.21292 * 119.99841 * 0.02562 * 11 10 9 13 13 N 1.34771 * 119.99867 * 180.02562 * 11 10 9 14 14 C 1.39927 * 119.99971 * 176.03600 * 13 11 10 15 15 C 1.38895 * 120.06935 * 29.68304 * 14 13 11 16 16 C 1.38094 * 119.92549 * 179.72218 * 15 14 13 17 17 C 1.38296 * 120.07288 * 0.02562 * 16 15 14 18 18 C 1.38258 * 120.14509 * 0.02562 * 17 16 15 19 19 C 1.38142 * 120.06808 * 359.96061 * 18 17 16 20 20 C 1.50696 * 120.03497 * 180.02562 * 19 18 17 21 21 N 1.46496 * 109.47029 * 263.51321 * 20 19 18 22 22 C 1.33881 * 122.76390 * 263.06425 * 21 20 19 23 23 O 1.21228 * 125.39437 * 359.97438 * 22 21 20 24 24 C 1.51310 * 109.20686 * 179.83989 * 22 21 20 25 25 C 1.54219 * 103.55622 * 0.39035 * 24 22 21 26 26 C 1.33879 * 122.76478 * 83.35274 * 21 20 19 27 27 O 1.21223 * 125.39597 * 359.97438 * 26 21 20 28 28 H 0.96996 * 119.99926 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.46607 * 60.00322 * 10 9 7 30 30 H 1.08996 * 109.47023 * 299.99788 * 10 9 7 31 31 H 0.96993 * 120.00034 * 356.03809 * 13 11 10 32 32 H 1.07991 * 120.03635 * 359.75215 * 15 14 13 33 33 H 1.08006 * 119.96154 * 179.97438 * 16 15 14 34 34 H 1.08004 * 119.93053 * 179.97438 * 17 16 15 35 35 H 1.07995 * 119.96922 * 179.97438 * 18 17 16 36 36 H 1.08995 * 109.47496 * 23.51135 * 20 19 18 37 37 H 1.09000 * 109.46938 * 143.51068 * 20 19 18 38 38 H 1.09000 * 110.79859 * 241.77540 * 24 22 21 39 39 H 1.09011 * 110.54368 * 118.87896 * 24 22 21 40 40 H 1.09005 * 110.60322 * 241.25833 * 25 24 22 41 41 H 1.09003 * 110.61164 * 118.29422 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4402 0.6999 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 16 3.7723 -1.2020 -0.0012 10 6 4.0866 -2.9846 -0.0025 11 6 5.5730 -3.2326 -0.0026 12 8 6.3440 -2.2963 -0.0014 13 7 6.0456 -4.4947 -0.0041 14 6 7.4231 -4.7259 -0.0880 15 6 8.3174 -3.7975 0.4293 16 6 9.6760 -4.0314 0.3501 17 6 10.1466 -5.1882 -0.2440 18 6 9.2591 -6.1138 -0.7608 19 6 7.8988 -5.8860 -0.6845 20 6 6.9321 -6.8957 -1.2475 21 7 6.5383 -6.4933 -2.5999 22 6 5.4090 -5.8212 -2.8559 23 8 4.5961 -5.4726 -2.0269 24 6 5.3099 -5.5627 -4.3435 25 6 6.5861 -6.2175 -4.9100 26 6 7.2751 -6.7722 -3.6824 27 8 8.3277 -7.3734 -3.6793 28 1 -0.4850 0.8400 0.0004 29 1 3.6433 -3.4309 -0.8927 30 1 3.6440 -3.4322 0.8873 31 1 5.4309 -5.2428 0.0530 32 1 7.9505 -2.8940 0.8934 33 1 10.3719 -3.3096 0.7517 34 1 11.2097 -5.3686 -0.3051 35 1 9.6297 -7.0160 -1.2245 36 1 7.4098 -7.8747 -1.2845 37 1 6.0483 -6.9464 -0.6116 38 1 5.3033 -4.4926 -4.5507 39 1 4.4195 -6.0376 -4.7558 40 1 7.2144 -5.4731 -5.3991 41 1 6.3308 -7.0199 -5.6021 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000144753365.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:53:36 Heat of formation + Delta-G solvation = -63.761111 kcal Electronic energy + Delta-G solvation = -28307.630476 eV Core-core repulsion = 24279.386827 eV Total energy + Delta-G solvation = -4028.243649 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.23019 -40.41941 -38.81794 -38.41102 -36.10042 -34.86366 -34.06894 -32.43757 -31.24244 -30.64684 -28.44814 -26.62801 -26.47290 -25.60808 -23.26120 -22.50834 -21.88492 -20.38159 -19.79053 -18.18445 -17.63384 -17.52888 -17.29702 -16.70795 -16.49393 -15.82766 -15.44343 -15.03890 -14.99634 -14.62757 -14.53260 -14.44082 -14.17693 -14.08026 -13.68041 -13.50230 -13.28602 -13.21225 -12.87291 -12.80120 -12.70749 -12.11613 -11.72409 -11.66383 -11.54999 -11.26409 -11.01685 -10.95844 -10.62597 -10.41573 -10.28127 -10.06346 -9.86127 -9.47324 -9.00467 -8.94756 -8.51378 -8.10716 -6.92139 -6.28632 -4.00382 1.02401 1.24144 1.31803 2.30104 2.43420 2.69585 2.86051 3.25045 3.32327 3.49354 3.62224 3.73280 3.76202 3.91277 4.09419 4.32554 4.40591 4.50395 4.55704 4.67798 4.84165 4.99498 5.05904 5.10353 5.11339 5.19854 5.21452 5.25908 5.33166 5.34936 5.52088 5.60722 5.80351 5.94093 6.11410 6.22765 6.27267 6.44118 6.52322 6.52581 6.99231 7.02455 7.42373 7.52141 7.94720 8.32400 8.43513 9.17363 10.80704 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.013308 B = 0.003412 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.490643 B = 8205.485417 C = 9600.075304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.236 1.236 7 C -0.519 4.519 8 H 0.089 0.911 9 S -0.143 6.143 10 C -0.120 4.120 11 C 0.537 3.463 12 O -0.503 6.503 13 N -0.671 5.671 14 C 0.180 3.820 15 C -0.136 4.136 16 C -0.088 4.088 17 C -0.149 4.149 18 C -0.073 4.073 19 C -0.160 4.160 20 C 0.146 3.854 21 N -0.570 5.570 22 C 0.525 3.475 23 O -0.470 6.470 24 C -0.158 4.158 25 C -0.157 4.157 26 C 0.529 3.471 27 O -0.482 6.482 28 H 0.271 0.729 29 H 0.109 0.891 30 H 0.097 0.903 31 H 0.413 0.587 32 H 0.152 0.848 33 H 0.125 0.875 34 H 0.122 0.878 35 H 0.127 0.873 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.514 -17.185 -7.227 24.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.112 4.112 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.160 1.160 7 C -0.666 4.666 8 H 0.107 0.893 9 S 0.083 5.917 10 C -0.270 4.270 11 C 0.325 3.675 12 O -0.377 6.377 13 N -0.318 5.318 14 C 0.083 3.917 15 C -0.156 4.156 16 C -0.107 4.107 17 C -0.168 4.168 18 C -0.092 4.092 19 C -0.164 4.164 20 C 0.026 3.974 21 N -0.313 5.313 22 C 0.314 3.686 23 O -0.340 6.340 24 C -0.198 4.198 25 C -0.197 4.197 26 C 0.318 3.682 27 O -0.354 6.354 28 H 0.080 0.920 29 H 0.127 0.873 30 H 0.116 0.884 31 H 0.251 0.749 32 H 0.169 0.831 33 H 0.143 0.857 34 H 0.140 0.860 35 H 0.145 0.855 36 H 0.120 0.880 37 H 0.115 0.885 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 17.617 -15.645 -6.753 24.510 hybrid contribution -1.086 -0.671 0.021 1.277 sum 16.532 -16.316 -6.732 24.183 Atomic orbital electron populations 1.69936 1.05899 1.27723 1.48138 1.24700 0.94429 0.98881 0.93231 0.86746 0.81893 0.83366 0.79895 1.19237 1.19941 1.15977 1.22302 0.88103 0.97575 1.58662 0.89302 1.84704 1.09564 0.99938 1.97488 1.23266 0.92953 1.04249 1.06570 1.20487 0.91114 0.81578 0.74338 1.90648 1.58370 1.42205 1.46495 1.43788 1.05225 1.09700 1.73078 1.17744 0.83695 0.94515 0.95716 1.21589 0.92543 1.00864 1.00590 1.21166 0.95154 0.96739 0.97640 1.21077 0.99585 0.94938 1.01240 1.20861 0.91441 0.99339 0.97606 1.19628 0.94790 0.97399 1.04584 1.20435 0.98487 0.97308 0.81184 1.46858 1.22944 1.51957 1.09525 1.20899 0.79773 0.75593 0.92382 1.90748 1.41959 1.48183 1.53111 1.22486 1.00053 1.05580 0.91673 1.22482 0.97069 1.03248 0.96910 1.20830 0.83803 0.77711 0.85851 1.90753 1.20164 1.38132 1.86343 0.91954 0.87260 0.88440 0.74876 0.83102 0.85696 0.86020 0.85487 0.87975 0.88473 0.85830 0.85973 0.86168 0.86171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.56 13.97 55.49 0.78 -25.79 16 2 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16 3 Si 0.86 21.73 27.74 -169.99 -4.71 17.01 16 4 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.24 -5.97 6.74 56.52 0.38 -5.59 16 7 C -0.52 -14.99 10.04 30.94 0.31 -14.68 16 8 H 0.09 2.69 8.03 -52.48 -0.42 2.27 16 9 S -0.14 -3.63 18.55 -107.50 -1.99 -5.63 16 10 C -0.12 -2.41 6.16 36.01 0.22 -2.19 16 11 C 0.54 9.86 7.65 -10.99 -0.08 9.77 16 12 O -0.50 -10.62 12.99 5.55 0.07 -10.55 16 13 N -0.67 -9.73 3.93 -9.86 -0.04 -9.76 16 14 C 0.18 2.49 6.37 -83.69 -0.53 1.95 16 15 C -0.14 -1.97 8.75 -39.39 -0.34 -2.31 16 16 C -0.09 -1.04 10.04 -39.61 -0.40 -1.44 16 17 C -0.15 -1.58 10.04 -39.55 -0.40 -1.97 16 18 C -0.07 -0.79 9.67 -39.61 -0.38 -1.17 16 19 C -0.16 -1.84 5.45 -104.43 -0.57 -2.40 16 20 C 0.15 1.37 5.33 -5.20 -0.03 1.35 16 21 N -0.57 -5.40 2.55 -116.64 -0.30 -5.70 16 22 C 0.52 5.32 8.06 -11.09 -0.09 5.23 16 23 O -0.47 -6.16 13.80 5.60 0.08 -6.09 16 24 C -0.16 -1.01 7.03 -26.95 -0.19 -1.20 16 25 C -0.16 -0.83 7.03 -26.95 -0.19 -1.02 16 26 C 0.53 4.77 8.05 -11.09 -0.09 4.68 16 27 O -0.48 -5.58 17.58 5.61 0.10 -5.48 16 28 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 29 H 0.11 2.17 7.30 -51.92 -0.38 1.79 16 30 H 0.10 1.84 8.14 -51.92 -0.42 1.42 16 31 H 0.41 5.24 5.73 -40.82 -0.23 5.00 16 32 H 0.15 2.51 5.82 -52.49 -0.31 2.21 16 33 H 0.13 1.23 8.06 -52.48 -0.42 0.80 16 34 H 0.12 1.00 8.06 -52.48 -0.42 0.57 16 35 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 36 H 0.10 0.81 7.89 -51.93 -0.41 0.40 16 37 H 0.10 0.84 6.26 -51.93 -0.33 0.52 16 38 H 0.12 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.12 0.54 8.14 -51.92 -0.42 0.12 16 40 H 0.12 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.12 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 361.45 15.07 5.45 5.45 Total: -1.00 -35.82 361.45 -8.04 -43.87 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -4.61 Total: 5.37 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -2.86 Total: -2.70 kcal Atomic # 7 Polarization: -41.69 SS G_CDS: 0.44 Total: -41.25 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: 0.25 Total: -22.12 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.71 Total: 17.01 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.99 Total: -5.63 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.82 -8.04 -43.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000144753365.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.896 kcal (2) G-P(sol) polarization free energy of solvation -35.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds