Wall clock time and date at job start Wed Apr 1 2020 05:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86800 * 120.00091 * 2 1 4 4 H 1.48505 * 109.46948 * 270.00104 * 3 2 1 5 5 H 1.48496 * 109.47120 * 29.99962 * 3 2 1 6 6 H 1.48496 * 109.47269 * 150.00315 * 3 2 1 7 7 C 1.38803 * 120.00175 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99853 * 359.97438 * 7 2 1 9 9 S 1.76198 * 120.00057 * 179.97438 * 7 2 1 10 10 C 1.81009 * 99.99712 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.46905 * 180.02562 * 10 9 7 12 12 O 1.21292 * 119.99841 * 0.02562 * 11 10 9 13 13 N 1.34771 * 119.99867 * 180.02562 * 11 10 9 14 14 C 1.39927 * 119.99971 * 176.03600 * 13 11 10 15 15 C 1.38895 * 120.06935 * 29.68304 * 14 13 11 16 16 C 1.38094 * 119.92549 * 179.72218 * 15 14 13 17 17 C 1.38296 * 120.07288 * 0.02562 * 16 15 14 18 18 C 1.38258 * 120.14509 * 0.02562 * 17 16 15 19 19 C 1.38142 * 120.06808 * 359.96061 * 18 17 16 20 20 C 1.50696 * 120.03497 * 180.02562 * 19 18 17 21 21 N 1.46496 * 109.47029 * 263.51321 * 20 19 18 22 22 C 1.33881 * 122.76390 * 263.06425 * 21 20 19 23 23 O 1.21228 * 125.39437 * 359.97438 * 22 21 20 24 24 C 1.51310 * 109.20686 * 179.83989 * 22 21 20 25 25 C 1.54219 * 103.55622 * 0.39035 * 24 22 21 26 26 C 1.33879 * 122.76478 * 83.35274 * 21 20 19 27 27 O 1.21223 * 125.39597 * 359.97438 * 26 21 20 28 28 H 0.96996 * 119.99926 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.46607 * 60.00322 * 10 9 7 30 30 H 1.08996 * 109.47023 * 299.99788 * 10 9 7 31 31 H 0.96993 * 120.00034 * 356.03809 * 13 11 10 32 32 H 1.07991 * 120.03635 * 359.75215 * 15 14 13 33 33 H 1.08006 * 119.96154 * 179.97438 * 16 15 14 34 34 H 1.08004 * 119.93053 * 179.97438 * 17 16 15 35 35 H 1.07995 * 119.96922 * 179.97438 * 18 17 16 36 36 H 1.08995 * 109.47496 * 23.51135 * 20 19 18 37 37 H 1.09000 * 109.46938 * 143.51068 * 20 19 18 38 38 H 1.09000 * 110.79859 * 241.77540 * 24 22 21 39 39 H 1.09011 * 110.54368 * 118.87896 * 24 22 21 40 40 H 1.09005 * 110.60322 * 241.25833 * 25 24 22 41 41 H 1.09003 * 110.61164 * 118.29422 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4402 0.6999 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 16 3.7723 -1.2020 -0.0012 10 6 4.0866 -2.9846 -0.0025 11 6 5.5730 -3.2326 -0.0026 12 8 6.3440 -2.2963 -0.0014 13 7 6.0456 -4.4947 -0.0041 14 6 7.4231 -4.7259 -0.0880 15 6 8.3174 -3.7975 0.4293 16 6 9.6760 -4.0314 0.3501 17 6 10.1466 -5.1882 -0.2440 18 6 9.2591 -6.1138 -0.7608 19 6 7.8988 -5.8860 -0.6845 20 6 6.9321 -6.8957 -1.2475 21 7 6.5383 -6.4933 -2.5999 22 6 5.4090 -5.8212 -2.8559 23 8 4.5961 -5.4726 -2.0269 24 6 5.3099 -5.5627 -4.3435 25 6 6.5861 -6.2175 -4.9100 26 6 7.2751 -6.7722 -3.6824 27 8 8.3277 -7.3734 -3.6793 28 1 -0.4850 0.8400 0.0004 29 1 3.6433 -3.4309 -0.8927 30 1 3.6440 -3.4322 0.8873 31 1 5.4309 -5.2428 0.0530 32 1 7.9505 -2.8940 0.8934 33 1 10.3719 -3.3096 0.7517 34 1 11.2097 -5.3686 -0.3051 35 1 9.6297 -7.0160 -1.2245 36 1 7.4098 -7.8747 -1.2845 37 1 6.0483 -6.9464 -0.6116 38 1 5.3033 -4.4926 -4.5507 39 1 4.4195 -6.0376 -4.7558 40 1 7.2144 -5.4731 -5.3991 41 1 6.3308 -7.0199 -5.6021 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000144753365.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:53:35 Heat of formation + Delta-G solvation = -86.948266 kcal Electronic energy + Delta-G solvation = -28308.635947 eV Core-core repulsion = 24279.386827 eV Total energy + Delta-G solvation = -4029.249120 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.97102 -41.60212 -39.65545 -39.54405 -36.89683 -35.99748 -34.86669 -34.68402 -32.06922 -31.96613 -29.71793 -27.87977 -27.42758 -27.08903 -24.30936 -23.20036 -22.81580 -21.69230 -20.54264 -19.95088 -18.82679 -18.35761 -18.18400 -18.00267 -17.34387 -17.12338 -16.84474 -16.63960 -16.00187 -15.86523 -15.69024 -15.27245 -15.19722 -14.96962 -14.87503 -14.83208 -14.66922 -14.28079 -14.04991 -13.67503 -13.49293 -13.43890 -13.35881 -13.02439 -12.72562 -12.54988 -12.50343 -12.14052 -11.88504 -11.71438 -11.54588 -11.18112 -11.05670 -10.94479 -10.82774 -10.59087 -9.89739 -9.19335 -9.00871 -8.52358 -6.24138 0.07917 0.32571 0.51641 0.92432 1.30406 1.41149 1.45772 1.52851 1.58961 1.73967 2.06781 2.24044 2.66251 2.78824 2.85681 3.19325 3.29087 3.57198 3.60727 3.63978 3.73767 4.02706 4.13482 4.15239 4.20181 4.27972 4.41544 4.43546 4.49166 4.55621 4.63851 4.75303 4.86352 4.90885 4.99352 5.23324 5.32183 5.44900 5.54487 5.70005 5.80204 5.98849 6.10745 6.21624 6.32623 6.74912 6.91964 6.95995 8.60420 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.013308 B = 0.003412 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.490643 B = 8205.485417 C = 9600.075304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.048 3.952 3 Si 0.915 3.085 4 H -0.260 1.260 5 H -0.258 1.258 6 H -0.237 1.237 7 C -0.531 4.531 8 H 0.059 0.941 9 S -0.163 6.163 10 C -0.105 4.105 11 C 0.542 3.458 12 O -0.535 6.535 13 N -0.651 5.651 14 C 0.154 3.846 15 C -0.157 4.157 16 C -0.093 4.093 17 C -0.138 4.138 18 C -0.074 4.074 19 C -0.151 4.151 20 C 0.141 3.859 21 N -0.571 5.571 22 C 0.515 3.485 23 O -0.508 6.508 24 C -0.153 4.153 25 C -0.144 4.144 26 C 0.524 3.476 27 O -0.509 6.509 28 H 0.278 0.722 29 H 0.113 0.887 30 H 0.108 0.892 31 H 0.421 0.579 32 H 0.123 0.877 33 H 0.143 0.857 34 H 0.153 0.847 35 H 0.145 0.855 36 H 0.120 0.880 37 H 0.100 0.900 38 H 0.124 0.876 39 H 0.146 0.854 40 H 0.135 0.865 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.611 -18.277 -8.682 27.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.158 4.158 3 Si 0.736 3.264 4 H -0.185 1.185 5 H -0.182 1.182 6 H -0.161 1.161 7 C -0.678 4.678 8 H 0.077 0.923 9 S 0.064 5.936 10 C -0.256 4.256 11 C 0.330 3.670 12 O -0.412 6.412 13 N -0.298 5.298 14 C 0.058 3.942 15 C -0.178 4.178 16 C -0.111 4.111 17 C -0.157 4.157 18 C -0.093 4.093 19 C -0.155 4.155 20 C 0.020 3.980 21 N -0.314 5.314 22 C 0.306 3.694 23 O -0.381 6.381 24 C -0.192 4.192 25 C -0.183 4.183 26 C 0.316 3.684 27 O -0.383 6.383 28 H 0.087 0.913 29 H 0.131 0.869 30 H 0.126 0.874 31 H 0.261 0.739 32 H 0.141 0.859 33 H 0.161 0.839 34 H 0.170 0.830 35 H 0.163 0.837 36 H 0.138 0.862 37 H 0.118 0.882 38 H 0.142 0.858 39 H 0.163 0.837 40 H 0.153 0.847 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 19.726 -16.785 -8.222 27.175 hybrid contribution -1.644 -0.541 0.472 1.794 sum 18.082 -17.326 -7.750 26.215 Atomic orbital electron populations 1.70014 1.07334 1.29083 1.48992 1.25550 0.95260 1.02189 0.92752 0.85869 0.80645 0.79510 0.80348 1.18453 1.18206 1.16106 1.22432 0.90162 0.96682 1.58537 0.92271 1.84536 1.06581 1.04932 1.97590 1.23181 0.94882 1.00217 1.07309 1.20051 0.89876 0.82559 0.74529 1.90647 1.58637 1.43413 1.48494 1.43435 1.06101 1.08414 1.71871 1.17883 0.82771 0.95814 0.97719 1.21505 0.94081 1.00380 1.01806 1.21378 0.94237 0.97816 0.97703 1.21443 1.01188 0.93770 0.99286 1.21148 0.91034 0.99957 0.97139 1.19809 0.95695 0.96563 1.03385 1.20541 0.98409 0.97470 0.81594 1.46964 1.22963 1.51744 1.09702 1.21605 0.79234 0.74730 0.93823 1.90722 1.43197 1.49740 1.54487 1.22577 1.01750 1.05997 0.88858 1.22570 0.95956 1.04192 0.95554 1.21466 0.83370 0.76963 0.86638 1.90738 1.21340 1.39435 1.86768 0.91287 0.86917 0.87398 0.73896 0.85898 0.83939 0.82975 0.83728 0.86235 0.88196 0.85756 0.83658 0.84713 0.83144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.10 13.97 21.65 0.30 -55.79 16 2 C 0.05 2.84 5.50 84.86 0.47 3.30 16 3 Si 0.91 44.99 27.74 68.60 1.90 46.89 16 4 H -0.26 -12.39 7.11 99.48 0.71 -11.69 16 5 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 6 H -0.24 -11.65 6.74 99.48 0.67 -10.98 16 7 C -0.53 -31.43 10.04 67.96 0.68 -30.74 16 8 H 0.06 3.74 8.03 -2.91 -0.02 3.71 16 9 S -0.16 -8.38 18.55 -56.49 -1.05 -9.43 16 10 C -0.11 -4.31 6.16 71.24 0.44 -3.87 16 11 C 0.54 20.30 7.65 87.66 0.67 20.97 16 12 O -0.54 -23.18 12.99 -3.07 -0.04 -23.22 16 13 N -0.65 -19.06 3.93 -303.50 -1.19 -20.25 16 14 C 0.15 4.21 6.37 38.15 0.24 4.45 16 15 C -0.16 -4.59 8.75 22.39 0.20 -4.40 16 16 C -0.09 -2.08 10.04 22.25 0.22 -1.85 16 17 C -0.14 -2.54 10.04 22.29 0.22 -2.31 16 18 C -0.07 -1.40 9.67 22.25 0.22 -1.18 16 19 C -0.15 -3.25 5.45 -19.74 -0.11 -3.36 16 20 C 0.14 2.44 5.33 85.63 0.46 2.90 16 21 N -0.57 -9.92 2.55 -760.75 -1.94 -11.86 16 22 C 0.51 9.85 8.06 87.99 0.71 10.56 16 23 O -0.51 -13.26 13.80 -2.87 -0.04 -13.30 16 24 C -0.15 -1.59 7.03 30.45 0.21 -1.37 16 25 C -0.14 -1.05 7.03 30.46 0.21 -0.84 16 26 C 0.52 8.23 8.05 87.99 0.71 8.93 16 27 O -0.51 -10.60 17.58 -2.85 -0.05 -10.65 16 28 H 0.28 15.65 8.31 -92.71 -0.77 14.88 16 29 H 0.11 4.56 7.30 -2.40 -0.02 4.55 16 30 H 0.11 4.16 8.14 -2.40 -0.02 4.14 16 31 H 0.42 10.75 5.73 -92.71 -0.53 10.22 16 32 H 0.12 4.29 5.82 -2.92 -0.02 4.27 16 33 H 0.14 2.58 8.06 -2.91 -0.02 2.56 16 34 H 0.15 1.88 8.06 -2.91 -0.02 1.85 16 35 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 36 H 0.12 1.64 7.89 -2.39 -0.02 1.63 16 37 H 0.10 1.66 6.26 -2.39 -0.01 1.64 16 38 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.15 0.86 8.14 -2.38 -0.02 0.84 16 40 H 0.13 0.69 8.14 -2.38 -0.02 0.67 16 41 H 0.15 0.26 8.14 -2.39 -0.02 0.24 16 Total: -1.00 -79.40 361.45 3.97 -75.43 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: 0.52 Total: 20.99 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: 5.55 Total: 1.19 kcal Atomic # 7 Polarization: -85.08 SS G_CDS: -2.83 Total: -87.91 kcal Atomic # 8 Polarization: -47.04 SS G_CDS: -0.13 Total: -47.17 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.90 Total: 46.89 kcal Atomic # 16 Polarization: -8.38 SS G_CDS: -1.05 Total: -9.43 kcal Total: -79.40 3.97 -75.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000144753365.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.520 kcal (2) G-P(sol) polarization free energy of solvation -79.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds